View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_30 (Length: 497)
Name: NF0856_high_30
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 47418720 - 47419187
Alignment:
| Q |
1 |
tgttcaatttcaccagagttaacaataggcatcccatgcaatttagataaatgttcagttgacacagatcaacctcgcattcacttagaatcgttgaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47418720 |
tgttcaatttcaccagagttaacaataggcatcccatgcaatttagataaatgttcagttgacacagatcaacctcgcattcacttagaatcgttgaatg |
47418819 |
T |
|
| Q |
101 |
tactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattctccttatgtgtaaatcatgatgatgaagttgtggtctgagagatga |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47418820 |
tactctgccgtattacacccaagtgatttagaccaatgttcagatctggaattctccttatgtgtaaatcatgatgatgaagttgtggtctgagagatga |
47418919 |
T |
|
| Q |
201 |
taatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47418920 |
taatgaaccagttattgtcccggaaaaatggctgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaagg |
47419019 |
T |
|
| Q |
301 |
ccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcct |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47419020 |
ccttgcatgtgaatggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcct |
47419119 |
T |
|
| Q |
401 |
gaggttttttagcactgatgtccatagttgaataggttggctcactctttacttggatagctgaagaa |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47419120 |
gaggttttttagcactgatgtccatagttgaataggttggctcactctttacttggatagctgaagaa |
47419187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 56 - 468
Target Start/End: Original strand, 47390415 - 47390827
Alignment:
| Q |
56 |
cagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattct |
155 |
Q |
| |
|
|||| |||||||||| |||| |||||| ||||| ||| ||||| | |||||| |||||| |||| |||||||||||||||||| || ||| ||||||| |
|
|
| T |
47390415 |
cagtcgacacagatccacctggcattctcttaggatcattgaaagaactctgacgttctgcacctaagtgatttagaccaatgctcggatgtggaatttg |
47390514 |
T |
|
| Q |
156 |
ccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttcca |
255 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
47390515 |
ccttatgtgtgaatcatgaggatgaggttgtggtctgaaagatgatgatgaactagtggttgtcccggaaaaatggctgtagttaccaccactgcctcca |
47390614 |
T |
|
| Q |
256 |
tatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactgg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47390615 |
tatgtcgatgggaaatgtatatgctgttgttgctgcttatttaggccttgcatgtgaacggcagatctttcagtttcttgactaacagcaatagaactgg |
47390714 |
T |
|
| Q |
356 |
atgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccatagttgaataggttggctcactctttacttg |
455 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47390715 |
atgttggtaattgatttgattgcactactcgaacatcatgttcctgaggttttttagcactgatgtccatagttgaataggttggctcactcttcacttg |
47390814 |
T |
|
| Q |
456 |
gatagctgaagaa |
468 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47390815 |
gatagctgaagaa |
47390827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 184 - 468
Target Start/End: Original strand, 47421362 - 47421646
Alignment:
| Q |
184 |
tgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgtt |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||| |||| |||| | ||||||| || |||||| | |||||||||| ||||| |||| |
|
|
| T |
47421362 |
tgtggtctgagagatgataatgaaccagtgattgtccccaaaaaagggttaaagttgcaaccactgatttcatatggcaatgggaaatgaatatgttgtt |
47421461 |
T |
|
| Q |
284 |
gttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgac |
383 |
Q |
| |
|
||||||| |||| || |||||| || ||| | || ||||||||||||||||||| | |||||||||||| | |||||||| ||| || ||| || |
|
|
| T |
47421462 |
gttgctgattataaaagccttgtgtgcaaactggggtgttttcagtttcttgactaatggtgttagaactggatggtagtaattgagttggttccactac |
47421561 |
T |
|
| Q |
384 |
tcgaacatcatgttcctgaggttttttagcactgatgtccatagttgaataggttggctcactctttacttggatagctgaagaa |
468 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
47421562 |
tcgaacatcatgttcctgagattttttagcactgatgtccatagttgaatagcttggctcactcttcacttggatagctgaagaa |
47421646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 67 - 469
Target Start/End: Original strand, 47407540 - 47407942
Alignment:
| Q |
67 |
gatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattctccttatgtgta |
166 |
Q |
| |
|
|||| ||||||||||| ||||| ||| |||||| ||||||| ||||||||||||||||||| ||||||||| || ||| ||||||||||||| ||||| |
|
|
| T |
47407540 |
gatccacctcgcattctcttaggatcattgaataaactctgctgttctacacccaagtgattgagaccaatgctctgatgtggaattctccttttgtgtg |
47407639 |
T |
|
| Q |
167 |
aatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgg |
266 |
Q |
| |
|
||| || | ||| |||||||||| |||||||||||||||||||| ||| |||| ||||| | || |||| ||||||||| || |||||| |||||| |
|
|
| T |
47407640 |
aattgagaggttgaggttgtggtcttagagatgataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactgatttcatatggcgatgg |
47407739 |
T |
|
| Q |
267 |
gaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaat |
366 |
Q |
| |
|
||||||||||| ||||||||||| |||| || |||||| ||||||| | || ||||||||||||||| ||| | ||||||| |||| ||||| |
|
|
| T |
47407740 |
aaaatgtatatgttgttgttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttcttgacaaatggtgttagaactagatggcagtaat |
47407839 |
T |
|
| Q |
367 |
tgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccatagttgaataggttggctcactctttacttggatagctgaag |
466 |
Q |
| |
|
||| ||| || ||| || |||||||||||||||||| |||||||| ||| ||||||||||||||||| || ||| || |||| |||||||| |||||| |
|
|
| T |
47407840 |
tgagttggttccactgcttgaacatcatgttcctgagattttttagtactaatgtccatagttgaataagtcggcccagtcttcacttggattactgaag |
47407939 |
T |
|
| Q |
467 |
aat |
469 |
Q |
| |
|
||| |
|
|
| T |
47407940 |
aat |
47407942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 47407384 - 47407436
Alignment:
| Q |
1 |
tgttcaatttcaccagagttaacaataggcatcccatgcaatttagataaatg |
53 |
Q |
| |
|
|||||| ||| |||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
47407384 |
tgttcattttgaccagaattaacagaaggcaacccatgcaatttagataaatg |
47407436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 46796380 - 46796330
Alignment:
| Q |
418 |
atgtccatagttgaataggttggctcactctttacttggatagctgaagaa |
468 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||| | |||||||||| |
|
|
| T |
46796380 |
atgtccataattgaataggtcggctcactcttcacttgaagagctgaagaa |
46796330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3727 times since January 2019
Visitors: 6175