View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_33 (Length: 483)

Name: NF0856_high_33
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_33
NF0856_high_33
[»] chr5 (7 HSPs)
chr5 (30-473)||(14502695-14503133)
chr5 (39-95)||(35621139-35621195)
chr5 (72-109)||(11404691-11404728)
chr5 (41-112)||(2684854-2684925)
chr5 (39-109)||(38844067-38844137)
chr5 (70-112)||(3954416-3954458)
chr5 (52-109)||(10243172-10243229)
[»] chr8 (4 HSPs)
chr8 (36-112)||(3053336-3053412)
chr8 (32-112)||(32943504-32943584)
chr8 (30-112)||(26457075-26457155)
chr8 (51-100)||(5501407-5501456)
[»] chr7 (6 HSPs)
chr7 (39-112)||(44397446-44397519)
chr7 (71-112)||(5968381-5968422)
chr7 (72-112)||(12296457-12296497)
chr7 (63-103)||(30785494-30785534)
chr7 (64-103)||(45630195-45630234)
chr7 (60-109)||(5254975-5255025)
[»] chr4 (14 HSPs)
chr4 (32-107)||(22226976-22227049)
chr4 (30-112)||(9088137-9088219)
chr4 (32-109)||(31012559-31012636)
chr4 (72-109)||(5579780-5579817)
chr4 (70-112)||(50116311-50116353)
chr4 (63-112)||(17056022-17056071)
chr4 (31-112)||(53718271-53718352)
chr4 (60-104)||(9290164-9290208)
chr4 (69-100)||(53963384-53963415)
chr4 (70-100)||(45652127-45652157)
chr4 (30-87)||(23775261-23775318)
chr4 (69-97)||(13843188-13843216)
chr4 (61-109)||(28184379-28184427)
chr4 (60-96)||(35298245-35298281)
[»] chr2 (8 HSPs)
chr2 (33-112)||(32886571-32886648)
chr2 (34-110)||(13601270-13601344)
chr2 (69-100)||(38611346-38611377)
chr2 (77-107)||(22358908-22358938)
chr2 (30-98)||(15372094-15372160)
chr2 (41-105)||(26911233-26911295)
chr2 (69-110)||(43449623-43449664)
chr2 (76-109)||(44985587-44985620)
[»] chr1 (4 HSPs)
chr1 (30-103)||(44058235-44058306)
chr1 (62-103)||(48217318-48217359)
chr1 (33-105)||(23615426-23615497)
chr1 (69-100)||(49208255-49208286)
[»] chr3 (4 HSPs)
chr3 (61-112)||(51818414-51818465)
chr3 (69-109)||(48923489-48923529)
chr3 (69-107)||(19279661-19279699)
chr3 (71-100)||(47896465-47896494)
[»] chr6 (4 HSPs)
chr6 (71-112)||(24619364-24619405)
chr6 (71-112)||(8438948-8438989)
chr6 (41-112)||(1350497-1350566)
chr6 (33-105)||(24980167-24980238)
[»] scaffold0504 (1 HSPs)
scaffold0504 (52-109)||(6846-6903)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 473
Target Start/End: Original strand, 14502695 - 14503133
Alignment:
Q  30 ggcacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcacttnnnnnnnngataggatt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  14502695 ggcacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcacttaaaaaaaagataggatt 14502794  T
Q  130 attatgttcttaataaattacaaatccagttattataat---ctaaatgagaataattagaattaaacatatcagagatgcaatacaaaaaccataagaa 226  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14502795 attatgttcttaataaattacaaatccagttattataataatctaaatgagaataattagaattaaacatatcagagatgcaatacaaaaaccataagaa 14502894  T
Q  227 ggcatgcatgcagtacacttgaatgcaattnnnnnnntattttcatttgagtnnnnnnnncttaacttacttagacctcactatttttacatgtatatta 326  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  14502895 ggcatgcatgcagtacacttgaatgcaattaaaaaaatattttcatttgagtaaaa----cttaacttacttagacctcactatttttacatgtatatta 14502990  T
Q  327 cctaaatctacaatcaaaatgattagtaccagcaaatcagcaatacattgtggatttgaataaagatacatatagtacatagttttaaactctatgagaa 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14502991 cctaaatctacaatcaaaatgattagtaccagcaaatcagcaatatattgtggatttgaataaagatacatatagtacatagttttaaactctatgagaa 14503090  T
Q  427 ggcttaattatgagagcaccaaagataattaaattaagttgcctttg 473  Q
    ||||||||||||||||||||||||     ||||||||||||||||||    
T  14503091 ggcttaattatgagagcaccaaag----ctaaattaagttgcctttg 14503133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 35621195 - 35621139
Alignment:
Q  39 tcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaata 95  Q
    ||||||||||||||||||| |||| | || |||||||||||||||||||||||||||    
T  35621195 tcaaatcaaaagtatttagacgcaaatacataaatgataaaatttaaaagagaaata 35621139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 11404728 - 11404691
Alignment:
Q  72 atgataaaatttaaaagagaaataatttagtcacatca 109  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11404728 atgataaaatttaaaagagaaataatttagtcacatca 11404691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 2684854 - 2684925
Alignment:
Q  41 aaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    |||||||||||||||||    |||||| | |||||||| ||||||||||||||||||| ||||| |||||||    
T  2684854 aaatcaaaagtatttagataaacacacatgaatgataatatttaaaagagaaataattaagtcaaatcactt 2684925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 38844137 - 38844067
Alignment:
Q  39 tcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatca 109  Q
    |||||||||||||||||||    |  ||| ||| ||||||||||||||||| |||||||||||||||||||    
T  38844137 tcaaatcaaaagtatttagatatattcacataagtgataaaatttaaaagataaataatttagtcacatca 38844067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 3954416 - 3954458
Alignment:
Q  70 aaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    |||||||||||||||||||| || ||||||||||| |||||||    
T  3954416 aaatgataaaatttaaaagaaaagtaatttagtcatatcactt 3954458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 10243229 - 10243172
Alignment:
Q  52 atttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatca 109  Q
    |||||||||||||||| ||||| | |||| |||||||| ||||||  |||||||||||    
T  10243229 atttaggcgcacacacataaatcaaaaaaattaaaagataaataaaatagtcacatca 10243172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 3053336 - 3053412
Alignment:
Q  36 acctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    |||||||||||| |||||||| ||  |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3053336 acctcaaatcaagagtatttaagcatacacacataaatgataaaatttaaaagagaaataatttagtcacatcactt 3053412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 32943504 - 32943584
Alignment:
Q  32 cacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||||| |||||||||||||||| | ||||||||| ||||| |||||||||||| || |||||||| ||||| |||||||    
T  32943504 cacaaccacaaatcaaaagtatttggacgcacacacataaataataaaatttaaatgaaaaataattaagtcatatcactt 32943584  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 26457075 - 26457155
Alignment:
Q  30 ggcacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||||||| ||||||||||| |||| | | || |||  ||||| |||||||||||||||||||||||||||| |||||||||    
T  26457075 ggcacaaccccaaatcaaaagcatttggacacataca--taaataataaaatttaaaagagaaataatttagttacatcactt 26457155  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 5501456 - 5501407
Alignment:
Q  51 tatttaggcgcacacacgtaaatgataaaatttaaaagagaaataattta 100  Q
    |||||||||||| ||||   ||||||||||||||||||||||||||||||    
T  5501456 tatttaggcgcatacacaagaatgataaaatttaaaagagaaataattta 5501407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 44397519 - 44397446
Alignment:
Q  39 tcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||||||||||||||||| |  || ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  44397519 tcaaatcaaaagtatttagacatactcacttgaatgataaaatttaaaagagaaataatttagtcacatcactt 44397446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 5968381 - 5968422
Alignment:
Q  71 aatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    |||||||||||||||||||||||||||||| |||||| ||||    
T  5968381 aatgataaaatttaaaagagaaataatttaatcacattactt 5968422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 12296457 - 12296497
Alignment:
Q  72 atgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  12296457 atgataaaatttaaacgaaaaataatttagtcacatcactt 12296497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 30785494 - 30785534
Alignment:
Q  63 cacacgtaaatgataaaatttaaaagagaaataatttagtc 103  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  30785494 cacacataaatgataaaatttaaaagaaaaataatttagtc 30785534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 45630195 - 45630234
Alignment:
Q  64 acacgtaaatgataaaatttaaaagagaaataatttagtc 103  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  45630195 acacataaatgataaaatttataagagaaataatttagtc 45630234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 5255025 - 5254975
Alignment:
Q  60 gcacacacgtaaatgataaaatttaaaagagaaataattt-agtcacatca 109  Q
    |||||||| ||||||  ||||||||||||||||||||||| ||||||||||    
T  5255025 gcacacacataaatgtaaaaatttaaaagagaaataatttaagtcacatca 5254975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 22226976 - 22227049
Alignment:
Q  32 cacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacat 107  Q
    |||||||  ||||||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||||||||    
T  22226976 cacaaccctaaatcaaaagtatttaggcacacata--taaatgataaaatttaaaagagaaataatttagtcacat 22227049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 9088219 - 9088137
Alignment:
Q  30 ggcacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||||||| |||||||||||||||||| | |||  || | ||||||||||||||||||||||||| ||||||||||| ||||    
T  9088219 ggcacaaccccaaatcaaaagtatttagacacacttacttgaatgataaaatttaaaagagaaatagtttagtcacattactt 9088137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 31012559 - 31012636
Alignment:
Q  32 cacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatca 109  Q
    ||||||| |||||||||||||||| |||  |||||| || ||| ||||| ||||||||||||||||||||||||||||    
T  31012559 cacaaccccaaatcaaaagtatttgggcaaacacacatatatggtaaaacttaaaagagaaataatttagtcacatca 31012636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 5579780 - 5579817
Alignment:
Q  72 atgataaaatttaaaagagaaataatttagtcacatca 109  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5579780 atgataaaatttaaaagagaaataatttagtcacatca 5579817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 50116353 - 50116311
Alignment:
Q  70 aaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  50116353 aaatgataaaatttaaaagagaaataatttaatcacaacactt 50116311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 17056071 - 17056022
Alignment:
Q  63 cacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||| ||||||||||||||||||||| ||||||||||||| || |||||    
T  17056071 cacacataaatgataaaatttaaaagaaaaataatttagtctcaacactt 17056022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 53718352 - 53718271
Alignment:
Q  31 gcacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||||| ||||||||||||||||| |     || || |||| | ||||||||||||||||||||||||| |||||||||||    
T  53718352 gcacaacttcaaatcaaaagtatttggatatgcatacataaacggtaaaatttaaaagagaaataatttaatcacatcactt 53718271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 9290164 - 9290208
Alignment:
Q  60 gcacacacgtaaatgataaaatttaaaagagaaataatttagtca 104  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||    
T  9290164 gcacacacataaatgataaaacttaaaagagaaataatgtagtca 9290208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 100
Target Start/End: Complemental strand, 53963415 - 53963384
Alignment:
Q  69 taaatgataaaatttaaaagagaaataattta 100  Q
    ||||||||||||||||||||||||||||||||    
T  53963415 taaatgataaaatttaaaagagaaataattta 53963384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 45652157 - 45652127
Alignment:
Q  70 aaatgataaaatttaaaagagaaataattta 100  Q
    |||||||||||||||||||||||||||||||    
T  45652157 aaatgataaaatttaaaagagaaataattta 45652127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 23775318 - 23775261
Alignment:
Q  30 ggcacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaa 87  Q
    ||||||||| ||||||||| ||||||||   |||  ||||||||||||||||||||||    
T  23775318 ggcacaaccccaaatcaaatgtatttagatacactaacgtaaatgataaaatttaaaa 23775261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 13843216 - 13843188
Alignment:
Q  69 taaatgataaaatttaaaagagaaataat 97  Q
    |||||||||||||||||||||||||||||    
T  13843216 taaatgataaaatttaaaagagaaataat 13843188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 28184427 - 28184379
Alignment:
Q  61 cacacacgtaaatgataaaatttaaaagagaaataatttagtcacatca 109  Q
    |||||||  |||||||||||||||||||| ||||||| || ||||||||    
T  28184427 cacacacaaaaatgataaaatttaaaagaaaaataatataatcacatca 28184379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 35298281 - 35298245
Alignment:
Q  60 gcacacacgtaaatgataaaatttaaaagagaaataa 96  Q
    |||||||||| | ||||||||||||||||||||||||    
T  35298281 gcacacacgttattgataaaatttaaaagagaaataa 35298245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 32886648 - 32886571
Alignment:
Q  33 acaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||||||||||||||||||||| | | |||||||  ||||||||||||||||| |||||||| || |||||||||||||    
T  32886648 acaacctcaaatcaaaagtatttggacacacacac--aaatgataaaatttaaatgagaaatagttaagtcacatcactt 32886571  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 13601270 - 13601344
Alignment:
Q  34 caacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcac 110  Q
    |||| |||||| ||||||||||| |  |||||| |  ||||||||||||||||| |||||||||||| |||||||||    
T  13601270 caacatcaaataaaaagtatttaagtacacacatg--aatgataaaatttaaaaaagaaataatttactcacatcac 13601344  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 100
Target Start/End: Complemental strand, 38611377 - 38611346
Alignment:
Q  69 taaatgataaaatttaaaagagaaataattta 100  Q
    ||||||||||||||||||||||||||||||||    
T  38611377 taaatgataaaatttaaaagagaaataattta 38611346  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 22358908 - 22358938
Alignment:
Q  77 aaaatttaaaagagaaataatttagtcacat 107  Q
    |||||||||||||||||||||||||||||||    
T  22358908 aaaatttaaaagagaaataatttagtcacat 22358938  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 15372094 - 15372160
Alignment:
Q  30 ggcacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatt 98  Q
    ||||||| |||||| |||||||||||  |  ||||||| |||||||||||||||||| || ||||||||    
T  15372094 ggcacaagctcaaaacaaaagtattt--gaacacacacataaatgataaaatttaaaggaaaaataatt 15372160  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 26911295 - 26911233
Alignment:
Q  41 aaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcac 105  Q
    ||||||||||||||| | | ||||||  ||||| ||||||||||||||| |||||||| ||||||    
T  26911295 aaatcaaaagtattttgacacacaca--taaataataaaatttaaaagataaataattaagtcac 26911233  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 43449664 - 43449623
Alignment:
Q  69 taaatgataaaatttaaaagagaaataatttagtcacatcac 110  Q
    ||||| ||||||||||||| |||||||||||||||| |||||    
T  43449664 taaataataaaatttaaaatagaaataatttagtcaaatcac 43449623  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 44985620 - 44985587
Alignment:
Q  76 taaaatttaaaagagaaataatttagtcacatca 109  Q
    |||||||||||||| |||||||||||||||||||    
T  44985620 taaaatttaaaagaaaaataatttagtcacatca 44985587  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 44058306 - 44058235
Alignment:
Q  30 ggcacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtc 103  Q
    ||||||||  |||||||||||||||||||||||||||  | ||| |||||||||||||| ||||||||||||||    
T  44058306 ggcacaactccaaatcaaaagtatttaggcgcacaca--ttaataataaaatttaaaagggaaataatttagtc 44058235  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 48217359 - 48217318
Alignment:
Q  62 acacacgtaaatgataaaatttaaaagagaaataatttagtc 103  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  48217359 acacacataaatgataaaatttataagagaaataatttagtc 48217318  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 23615426 - 23615497
Alignment:
Q  33 acaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcac 105  Q
    |||||||||||| |||| |||||||   ||  ||||| ||||||||||||||||||| |||||||||||||||    
T  23615426 acaacctcaaataaaaaatatttagatacattcacgtgaatgataaaatttaaaaga-aaataatttagtcac 23615497  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 100
Target Start/End: Original strand, 49208255 - 49208286
Alignment:
Q  69 taaatgataaaatttaaaagagaaataattta 100  Q
    ||||||||||||||||||||||||||||||||    
T  49208255 taaatgataaaatttaaaagagaaataattta 49208286  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 51818414 - 51818465
Alignment:
Q  61 cacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  51818414 cacacacataaatgataaaatttaaaagaaaaataatttaatcacatcactt 51818465  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 48923529 - 48923489
Alignment:
Q  69 taaatgataaaatttaaaagagaaataatttagtcacatca 109  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  48923529 taaatgataaaatataaaagagaaataatttactcacatca 48923489  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 19279661 - 19279699
Alignment:
Q  69 taaatgataaaatttaaaagagaaataatttagtcacat 107  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  19279661 taaatgattaaatttaaaagagaaataatttaatcacat 19279699  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 100
Target Start/End: Complemental strand, 47896494 - 47896465
Alignment:
Q  71 aatgataaaatttaaaagagaaataattta 100  Q
    ||||||||||||||||||||||||||||||    
T  47896494 aatgataaaatttaaaagagaaataattta 47896465  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 24619364 - 24619405
Alignment:
Q  71 aatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  24619364 aatgataaaatttaaaagagaaataatttagttacatcactt 24619405  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 8438989 - 8438948
Alignment:
Q  71 aatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  8438989 aatgataaaaattaaaagagaaataatttaatcacatcactt 8438948  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 1350497 - 1350566
Alignment:
Q  41 aaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatcactt 112  Q
    ||||||||||||||||| | || |||  |||||||||||||||||| |||| |||||| | ||| |||||||    
T  1350497 aaatcaaaagtatttagacacataca--taaatgataaaatttaaatgagatataattaaatcatatcactt 1350566  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 24980167 - 24980238
Alignment:
Q  33 acaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcac 105  Q
    |||||| || ||||||||||||||| | ||| ||  | ||||||||||||| |||||||| ||||||||||||    
T  24980167 acaaccccatatcaaaagtatttagacacactcatatgaatgataaaattt-aaagagaagtaatttagtcac 24980238  T

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Target: scaffold0504 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 6846 - 6903
Alignment:
Q  52 atttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacatca 109  Q
    |||||||||||||||| ||||| | |||| || ||||| |||||| ||||||||||||    
T  6846 atttaggcgcacacacataaattaaaaaaatttaaagataaataaattagtcacatca 6903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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