View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_34 (Length: 483)
Name: NF0856_high_34
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_34 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 30 - 479
Target Start/End: Original strand, 5390930 - 5391382
Alignment:
| Q |
30 |
ctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgc |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5390930 |
ctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgc |
5391029 |
T |
|
| Q |
130 |
agttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391030 |
agttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgc |
5391129 |
T |
|
| Q |
230 |
agcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaa |
329 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391130 |
accttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaa |
5391229 |
T |
|
| Q |
330 |
aatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataa---tagtg |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5391230 |
aatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataatagtagtg |
5391329 |
T |
|
| Q |
427 |
tatgttgtgacgtattttattgacaataatttgtttgtttagtataatctacc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
5391330 |
tatgttgtgacgtattttattgacaataatttgtttgtttagtttaatttacc |
5391382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 30 - 398
Target Start/End: Original strand, 5399649 - 5400017
Alignment:
| Q |
30 |
ctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5399649 |
ctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgc |
5399748 |
T |
|
| Q |
130 |
agttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5399749 |
agttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgc |
5399848 |
T |
|
| Q |
230 |
agcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaa |
329 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5399849 |
accttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaa |
5399948 |
T |
|
| Q |
330 |
aatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaa |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
5399949 |
aatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaataaaa |
5400017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 30 - 431
Target Start/End: Original strand, 5394468 - 5394869
Alignment:
| Q |
30 |
ctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| |
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|
| T |
5394468 |
ctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgc |
5394567 |
T |
|
| Q |
130 |
agttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgc |
229 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||| |
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|
| T |
5394568 |
aattgaatgcttcattctttgcgttaggatccgctgcaccccaaatatgttgttcggctattaaattagcatctgaagcagtagaataacactcccatgc |
5394667 |
T |
|
| Q |
230 |
agcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaa |
329 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
5394668 |
accttttgagccaggaaaccttaaaggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgtgccaatgacgttcatcatgctataaggtgaa |
5394767 |
T |
|
| Q |
330 |
aatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataatagtgtat |
429 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| ||||| |
|
|
| T |
5394768 |
aatccaaagatggggtgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaacaaatatattgttcatttaattatataataatgtat |
5394867 |
T |
|
| Q |
430 |
gt |
431 |
Q |
| |
|
|| |
|
|
| T |
5394868 |
gt |
5394869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 87 - 340
Target Start/End: Original strand, 3818850 - 3819103
Alignment:
| Q |
87 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcgg |
186 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||| || || ||||||||||||||||| |||| ||||||||||||| |||||||||||||||| | |
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|
| T |
3818850 |
accttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagcccaaatatgttgttcag |
3818949 |
T |
|
| Q |
187 |
atattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgta |
286 |
Q |
| |
|
|| |||| ||||| ||||| | | ||| ||||| || || | || ||||| || || |||| |||||||||||| |||||||||||||| |
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|
| T |
3818950 |
caatcaaatctgcatcagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgta |
3819049 |
T |
|
| Q |
287 |
aacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
340 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
3819050 |
aacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
3819103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 87 - 340
Target Start/End: Complemental strand, 47339027 - 47338774
Alignment:
| Q |
87 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcgg |
186 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||| || || ||||||||||||||||| |||| ||||||||||||| ||||||||||||| || | |
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|
| T |
47339027 |
accttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagcccaaatatgttgctcag |
47338928 |
T |
|
| Q |
187 |
atattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgta |
286 |
Q |
| |
|
|| |||| |||||| ||||| | | ||| ||||| || || | || ||||| || || |||| |||||||||||| |||||||||||||| |
|
|
| T |
47338927 |
caatcaaatcagcatcagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgta |
47338828 |
T |
|
| Q |
287 |
aacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
340 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
47338827 |
aacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
47338774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 43 - 351
Target Start/End: Complemental strand, 47347541 - 47347233
Alignment:
| Q |
43 |
cctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttc |
142 |
Q |
| |
|
|||| ||||| ||||| || || ||| ||||| |||| || || |||||||| | |||||||| || |||||||| |||||||| ||||| || ||||| |
|
|
| T |
47347541 |
cctcgtcaaacccatactcctcaatcccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacagttaaaagcttc |
47347442 |
T |
|
| Q |
143 |
attctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagcca |
242 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||||||| || | || |||| ||||| ||||| |||||| | ||||| || | |||| || |
|
|
| T |
47347441 |
gttcttagcataaggatccactgcggcccaaatatgttgctctgcaatcaaatccgcatcagaagccacagaataagactcccaagctccctttgtaccg |
47347342 |
T |
|
| Q |
243 |
ggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataa |
342 |
Q |
| |
|
||||| | || |||| ||| || ||||||||||||||||| ||||||||||| || |||| ||| ||||||| || ||||||||||||||||| |||| |
|
|
| T |
47347341 |
ggaaatttcaacggaacaccttcgtgcttgcaaattgcagcataaacacaaagtgtaccaacgagattcatcaaactataaggtgaaaatccaaatataa |
47347242 |
T |
|
| Q |
343 |
cttgtggtc |
351 |
Q |
| |
|
|||| |||| |
|
|
| T |
47347241 |
cttgaggtc |
47347233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 47350036 - 47349942
Alignment:
| Q |
87 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttg |
181 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||| || |||||||||| ||||||| ||||| |
|
|
| T |
47350036 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagcccaaatgtgttg |
47349942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 47349859 - 47349783
Alignment:
| Q |
264 |
tcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
340 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||| ||||||||||| |
|
|
| T |
47349859 |
tcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaacaacattcatcaaactgtaaggtgagaatccaaagat |
47349783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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