View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_44 (Length: 452)

Name: NF0856_high_44
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_44
NF0856_high_44
[»] chr2 (12 HSPs)
chr2 (10-409)||(14007560-14007962)
chr2 (121-231)||(45035155-45035265)
chr2 (244-345)||(20957437-20957538)
chr2 (121-230)||(45033361-45033470)
chr2 (244-342)||(20957612-20957710)
chr2 (121-229)||(17308689-17308797)
chr2 (121-196)||(1015756-1015831)
chr2 (127-233)||(3372458-3372564)
chr2 (234-342)||(17149055-17149163)
chr2 (136-239)||(33187188-33187291)
chr2 (121-191)||(30191620-30191690)
chr2 (300-340)||(8760002-8760042)
[»] chr3 (12 HSPs)
chr3 (127-345)||(26667004-26667223)
chr3 (217-345)||(25836367-25836495)
chr3 (121-225)||(27682197-27682301)
chr3 (121-196)||(41874545-41874620)
chr3 (121-225)||(28133726-28133830)
chr3 (235-342)||(9032830-9032937)
chr3 (248-345)||(548092-548187)
chr3 (121-231)||(4602293-4602403)
chr3 (243-311)||(43819944-43820012)
chr3 (121-231)||(4609105-4609215)
chr3 (128-225)||(26317951-26318048)
chr3 (190-231)||(27972591-27972632)
[»] chr5 (12 HSPs)
chr5 (120-345)||(6742425-6742653)
chr5 (121-231)||(10410798-10410908)
chr5 (234-345)||(4897423-4897532)
chr5 (248-355)||(21637272-21637381)
chr5 (132-231)||(10412371-10412470)
chr5 (217-338)||(33689869-33689990)
chr5 (121-225)||(8081508-8081612)
chr5 (121-196)||(25725808-25725883)
chr5 (236-345)||(33688153-33688262)
chr5 (121-196)||(25502025-25502100)
chr5 (121-228)||(25506938-25507045)
chr5 (127-194)||(40382763-40382830)
[»] chr8 (7 HSPs)
chr8 (121-343)||(35674837-35675058)
chr8 (121-239)||(30634229-30634347)
chr8 (134-226)||(35673345-35673437)
chr8 (245-342)||(29456284-29456381)
chr8 (121-196)||(1175148-1175223)
chr8 (129-226)||(1173513-1173610)
chr8 (310-345)||(35673477-35673512)
[»] chr7 (10 HSPs)
chr7 (234-345)||(29598097-29598208)
chr7 (234-355)||(21633313-21633436)
chr7 (128-196)||(29924665-29924733)
chr7 (234-355)||(21631352-21631467)
chr7 (234-345)||(21631122-21631225)
chr7 (128-213)||(21464528-21464615)
chr7 (216-297)||(3232944-3233025)
chr7 (244-338)||(21633093-21633179)
chr7 (270-355)||(9878298-9878384)
chr7 (248-297)||(29856101-29856150)
[»] chr6 (6 HSPs)
chr6 (236-345)||(30488432-30488541)
chr6 (120-239)||(15689026-15689145)
chr6 (272-345)||(25050859-25050932)
chr6 (149-281)||(9373599-9373730)
chr6 (128-239)||(34350341-34350452)
chr6 (265-345)||(26857816-26857895)
[»] chr4 (11 HSPs)
chr4 (217-342)||(42664932-42665057)
chr4 (127-231)||(28395559-28395667)
chr4 (234-341)||(10032679-10032785)
chr4 (273-345)||(42665175-42665247)
chr4 (234-345)||(18812662-18812774)
chr4 (120-188)||(4847687-4847755)
chr4 (272-355)||(18807515-18807599)
chr4 (244-295)||(5653307-5653358)
chr4 (234-345)||(8818744-8818853)
chr4 (305-344)||(19223142-19223181)
chr4 (231-309)||(8678562-8678640)
[»] scaffold0060 (1 HSPs)
scaffold0060 (245-355)||(9093-9205)
[»] chr1 (6 HSPs)
chr1 (234-341)||(1284831-1284937)
chr1 (120-239)||(44782182-44782301)
chr1 (121-225)||(46679708-46679812)
chr1 (234-320)||(33072760-33072845)
chr1 (234-344)||(10653488-10653594)
chr1 (250-345)||(41892084-41892178)
[»] scaffold0245 (2 HSPs)
scaffold0245 (234-341)||(9476-9582)
scaffold0245 (234-341)||(11098-11204)
[»] scaffold0229 (1 HSPs)
scaffold0229 (234-341)||(9804-9910)
[»] scaffold0160 (1 HSPs)
scaffold0160 (262-342)||(28412-28492)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Complemental strand, 14007962 - 14007560
Alignment:
Q  10 attattctaaacatcta--gagaaactagaacacgttatttctctcaacatggtcatttttgtttgatatatcattcaagttgtagtttaactaattgat 107  Q
    |||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14007962 attattctaaacatctaaagagaaactagaacatgttatttctctcaacatggtcatttttgtttgatatatcattcaagttgtagtttaaccaattgat 14007863  T
Q  108 agaagattgcatgtgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaaga 207  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||   ||||| |||    
T  14007862 agaagattgcatgtgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatggattgtctaattctctctaggag---tgacataga 14007766  T
Q  208 tagaaatgaataaaagatatgaaaatagtacaatgatgagagttatttataggggtg----agttagtctaactaactcttaactacctaaccagccaac 303  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||    ||||||||||||||||||||||||||||||||| |||||    
T  14007765 tagaaatgaataaaagatataaaaatagtacaatggtgagagttatttatatgggtgagtaagttagtctaactaactcttaactacctaaccaaccaac 14007666  T
Q  304 taaccatagtttacatattaactaactatggtttattcactactctaatagtatgcttaatttgttccatgcttatctaattatactttgtctactctct 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007665 taaccatagtttacatattaactaactatggtttattcactactctaatagtatgcttaatttgttccatgcttatctaattatactttgtctactctct 14007566  T
Q  404 acattt 409  Q
    ||||||    
T  14007565 acattt 14007560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 45035265 - 45035155
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| || |||||||||||||| || ||||||||  ||||||||||    
T  45035265 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtatagttctctctaggagtcatcacaaagatgcaaatgaataa 45035166  T
Q  221 aagatatgaaa 231  Q
    ||||| |||||    
T  45035165 aagatttgaaa 45035155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 20957538 - 20957437
Alignment:
Q  244 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 343  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||||||||| | | ||||||||||| ||||||||| | |||||||||||||||||||    
T  20957538 tgagacttatttataggggtgagttagtctaactaactcacaactacctaactaactaactaaccataatttacatataacctaactatggtttattcac 20957439  T
Q  344 ta 345  Q
    ||    
T  20957438 ta 20957437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 45033470 - 45033361
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| |||||||| |||||||||||| ||| ||||||||||||||||||| |||||| ||||| ||||||||||| || ||||||||  ||||||||||    
T  45033470 tgttatgaatcaaaagattccatggttctagatcaaatgcaatggaaagatagattgtataattttctctaggagtcatcacaaagatgcaaatgaataa 45033371  T
Q  221 aagatatgaa 230  Q
    ||||||||||    
T  45033370 aagatatgaa 45033361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 20957710 - 20957612
Alignment:
Q  244 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattca 342  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||||||||| | | ||||||||||| ||||||||| | ||||||||||||||||||    
T  20957710 tgagacttatttataggggtgagttagtctaactaactcacaactacctaactaactaactaaccataatttacatataacctaactatggtttattca 20957612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 17308797 - 17308689
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||| |||||||||| || || |||| | || || ||||    
T  17308797 tgttatgaatcaaaggattccattgttctagatcaaatgcaatggaaagatagattgtgtaattcactctaggagtcattaccaagaaacaattgtataa 17308698  T
Q  221 aagatatga 229  Q
    |||||||||    
T  17308697 aagatatga 17308689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 1015831 - 1015756
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagt 196  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  1015831 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctcttggagt 1015756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 3372458 - 3372564
Alignment:
Q  127 gaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataaaagata 226  Q
    |||||||| |||||||| ||| |||||||||| |||||||||||| |||| | ||||||||||| ||||| |  ||||||||| |||||||||||| |||    
T  3372458 gaatcaaaagattccatagttctaggtcaaatacaatggaaagatagattctataattctctctgggagtcaccacaaagataaaaatgaataaaatata 3372557  T
Q  227 tgaaaat 233  Q
    |||||||    
T  3372558 tgaaaat 3372564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 17149055 - 17149163
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    |||||||||||||| |||| ||| |||| ||| ||||||||||| |||| ||| ||| ||| || ||||||||||||| ||||| ||| |||||||||||    
T  17149055 agtacaatgatgagggttacttacagggatgaattagtctaactgactcctaattacttaaacaaccaactaaccataatttacctatcaactaactatg 17149154  T
Q  334 gtttattca 342  Q
    |||||||||    
T  17149155 gtttattca 17149163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 33187188 - 33187291
Alignment:
Q  136 gattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataaaagatatgaaaatag 235  Q
    |||||||| ||| ||||||||||| ||||||||||| |||||||||||| |||||| |||| || || |||| | || || ||||||||||   ||||||    
T  33187188 gattccattgttctaggtcaaatgtaatggaaagatagattgtgtaattatctctatgagtcattaccaagaaacaattgtataaaagataatgaaatag 33187287  T
Q  236 taca 239  Q
    ||||    
T  33187288 taca 33187291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 30191690 - 30191620
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctcta 191  Q
    ||||| ||||||||||||||||||||| ||| |||||| ||||| |||||| |||| | ||||||||||||    
T  30191690 tgttatgaatcaaaggattccatggttctagatcaaatacaatgaaaagatagattatataattctctcta 30191620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 8760042 - 8760002
Alignment:
Q  300 caactaaccatagtttacatattaactaactatggtttatt 340  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  8760042 caactaaccatagtttacatatcaactaattatgatttatt 8760002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 127 - 345
Target Start/End: Original strand, 26667004 - 26667223
Alignment:
Q  127 gaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaa-tgaataaaagat 225  Q
    ||||||||||||| ||||||| ||| |||||||| |||||||| | ||||||||||||||| ||| |||| || ||||||||||||| ||||||||||||    
T  26667004 gaatcaaaggatttcatggttctagatcaaatgcgatggaaaggtagattgtgtaattctccctaagagtcatcacaaagatagaaaatgaataaaagat 26667103  T
Q  226 atgaaaatagtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaac 325  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  26667104 atgaaaatggtacaatggtgagagttatttataggggtgagttagtctaactaactcttaactacctaactaaccaactaaccataatttacatattaac 26667203  T
Q  326 taactatggtttattcacta 345  Q
    ||||||||||| ||||||||    
T  26667204 taactatggttaattcacta 26667223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 25836495 - 25836367
Alignment:
Q  217 ataaaagatatgaaaatagtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagttta 316  Q
    ||||||||||  || | ||||||||| ||||||||||||||| || |||  ||||||||||||||| |||||||||||| | ||||||| ||||||||||    
T  25836495 ataaaagataacaagagagtacaatggtgagagttatttataaggatgaactagtctaactaactcctaactacctaactaaccaactagccatagttta 25836396  T
Q  317 catattaactaactatggtttattcacta 345  Q
      ||| |||||||||||||||||||||||    
T  25836395 tctatcaactaactatggtttattcacta 25836367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 27682301 - 27682197
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||| |  |||||||| |||||||||||||| || ||||||||  ||||||||||    
T  27682301 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaaatgaataa 27682202  T
Q  221 aagat 225  Q
    |||||    
T  27682201 aagat 27682197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 41874620 - 41874545
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagt 196  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  41874620 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattttgtaattctctctaggagt 41874545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 28133830 - 28133726
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||| |  |||||||| |||||||||||||| || ||||||||  || |||||||    
T  28133830 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaattgaataa 28133731  T
Q  221 aagat 225  Q
    |||||    
T  28133730 aagat 28133726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 235 - 342
Target Start/End: Original strand, 9032830 - 9032937
Alignment:
Q  235 gtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatgg 334  Q
    |||||||| ||| || |||||||| |||  ||||||||||||||||||||||||||  ||||| ||| ||||||||||||| ||||| |||||||||||     
T  9032830 gtacaatggtgaaagctatttataagggaaagttagtctaactaactcttaactactcaaccaaccagctaaccatagttttcatatcaactaactatga 9032929  T
Q  335 tttattca 342  Q
    ||||||||    
T  9032930 tttattca 9032937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 548187 - 548092
Alignment:
Q  248 agttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 345  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  |||| |||| |||| |||||||||||    
T  548187 agttatttatagtg-tgagttagtctaactaactcttaactacctaaccaaccaactaatcatagtttac-cattatctaaatatgatttattcacta 548092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 4602403 - 4602293
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||| |  ||||| || ||||||||| |||| || ||||||||  || | |||||    
T  4602403 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtatagttctctctatgagtcataacaaagatgcaattaaataa 4602304  T
Q  221 aagatatgaaa 231  Q
    |||||||||||    
T  4602303 aagatatgaaa 4602293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 43819944 - 43820012
Alignment:
Q  243 atgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccata 311  Q
    ||||| |||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||| ||||    
T  43819944 atgagggttatttataggagtgagttagtcttactaacttttaactacctaaccaaccaactaatcata 43820012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 4609215 - 4609105
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| |||||||||||||| || ||| ||| ||||||||||| ||||| |  ||||| || |||||||||| ||| || ||||||||  || |||||||    
T  4609215 tgttatgaatcaaaggattcaattgttctagatcaaatgcaattgaaaggtaaattgtatagttctctctagcagtcatcacaaagatgcaattgaataa 4609116  T
Q  221 aagatatgaaa 231  Q
    |||||||||||    
T  4609115 aagatatgaaa 4609105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 26317951 - 26318048
Alignment:
Q  128 aatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataaaagat 225  Q
    |||||||||||| ||||||| ||  |||||| ||||| |||||| |||||| || | ||||  |||||| || | ||  |||||||||||||||||||    
T  26317951 aatcaaaggatttcatggttctaaatcaaatacaatgaaaagatagattgtttattgctcttgaggagtcattagaacaatagaaatgaataaaagat 26318048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 27972632 - 27972591
Alignment:
Q  190 taggagttatgacaaagatagaaatgaataaaagatatgaaa 231  Q
    ||||||| || ||||| |||||||||||||||||||||||||    
T  27972632 taggagtcatcacaaatatagaaatgaataaaagatatgaaa 27972591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 120 - 345
Target Start/End: Complemental strand, 6742653 - 6742425
Alignment:
Q  120 gtgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaata 219  Q
    |||||| |||||||| |||||||| ||| ||| ||||||||||||||||||| ||||||||| ||||||||| |||| || |||||||||||||| ||||    
T  6742653 gtgttatgaatcaaacgattccatagttctagatcaaatgcaatggaaagatagattgtgtatttctctctacgagtcatcacaaagatagaaataaata 6742554  T
Q  220 aaagatatgaaaatagtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacat 319  Q
    ||| |||| |||||||||||||  ||||||||||||||||  || | ||||| |||||||||||||| |||||||||| ||||||||||||| |||| ||    
T  6742553 aaaaatatcaaaatagtacaatagtgagagttatttatagaagtaaattagtttaactaactcttaattacctaaccaaccaactaaccataatttatat 6742454  T
Q  320 attaactaacta---tggtttattcacta 345  Q
    ||||| ||||||   ||||||||||||||    
T  6742453 attaattaactatattggtttattcacta 6742425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 10410908 - 10410798
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||  |||||||  ||||||||||    
T  10410908 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcccaaagatgcaaatgaataa 10410809  T
Q  221 aagatatgaaa 231  Q
    ||||| |||||    
T  10410808 aagatgtgaaa 10410798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 234 - 345
Target Start/End: Original strand, 4897423 - 4897532
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    ||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||  |||| |||||||||    
T  4897423 agtacaatattgagagttatttataggg-tgagttagtctaactaactcttaactacctaatcaaccaactaaccatagtttac-cattatctaactatg 4897520  T
Q  334 gtttattcacta 345  Q
    ||||||||||||    
T  4897521 gtttattcacta 4897532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 355
Target Start/End: Original strand, 21637272 - 21637381
Alignment:
Q  248 agttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac--ta 345  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||  ||||| |||||||||||||||||||||  ||    
T  21637272 agttatttataagggtgagttagtgtaactaactcctaactacctaaccaaccaactaactatagttctcatataaactaactatggtttattcactata 21637371  T
Q  346 ctctaatagt 355  Q
    ||||||||||    
T  21637372 ctctaatagt 21637381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 10412470 - 10412371
Alignment:
Q  132 aaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataaaagatatgaaa 231  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||| || |||| ||||||||  |||||||||||||||||||||    
T  10412470 aaaggatttcatggttttaggtcaaatgcaatcgaaagatagattgtgtaattttctctaagaattatcacaaagatgcaaatgaataaaagatatgaaa 10412371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 338
Target Start/End: Complemental strand, 33689990 - 33689869
Alignment:
Q  217 ataaaagatatgaaaatagtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagttta 316  Q
    ||||||||||  |||||||||||||  |||||| |||||||| |||  ||||||||||| | ||||||||||||||||| | |||| || ||||||||||    
T  33689990 ataaaagataacaaaatagtacaatagtgagagctatttataagggcaagttagtctaattgactcttaactacctaactaaccaattatccatagttta 33689891  T
Q  317 catattaactaactatggttta 338  Q
    | ||||||||||||||||||||    
T  33689890 cttattaactaactatggttta 33689869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 8081612 - 8081508
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || || |||| | || || ||||    
T  8081612 tgttatgaatcaaagggttccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtataa 8081513  T
Q  221 aagat 225  Q
    |||||    
T  8081512 aagat 8081508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 25725808 - 25725883
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagt 196  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  25725808 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagt 25725883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 33688262 - 33688153
Alignment:
Q  236 tacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggt 335  Q
    ||||||| |||||| |||| |||| |||| |||||||| | |||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||||||    
T  33688262 tacaatggtgagagctattaatagaggtgggttagtcttagtaactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatggt 33688163  T
Q  336 ttattcacta 345  Q
    ||| ||||||    
T  33688162 ttaatcacta 33688153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 25502025 - 25502100
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagt 196  Q
    ||||| |||||| |||||||||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||    
T  25502025 tgttatgaatcagaggattccatggttctagatcaaatgcaatggaaatatagattgtgtaattctctctaggagt 25502100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 25506938 - 25507045
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||| | || ||||||| | || || ||||    
T  25506938 tgttatgaataaaaggattccatggttttagatcaaatgcaatggaaagatagattatgtaattctctctgggattcattacaaagaaacaattgtataa 25507037  T
Q  221 aagatatg 228  Q
    || |||||    
T  25507038 aaaatatg 25507045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 40382763 - 40382830
Alignment:
Q  127 gaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctagga 194  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||  |||||||||||||||||||||    
T  40382763 gaatcaaaggattacattgttctaggtcaaatgcaatggaaagataaattgtgtaattctctctagga 40382830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 121 - 343
Target Start/End: Original strand, 35674837 - 35675058
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| |||||  |||||| ||||||| || |||||||||||||||||| | |||||||||||||||||||||||| || ||||||||| ||||||||      
T  35674837 tgttacgaatctgaggattgcatggttctaagtcaaatgcaatggaaaggtagattgtgtaattctctctaggagtcatcacaaagatataaatgaattt 35674936  T
Q  221 aagata-tgaaaatagtacaat-gatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttaca 318  Q
     ||| | ||| ||||   |||| | ||||||||||||||||| ||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||    
T  35674937 tagacaatgagaata---caatagttgagagttatttataggagtgagttagtctaactaactcctaactatctaactaaccaactaaccatagtttaca 35675033  T
Q  319 tattaactaactatggtttattcac 343  Q
    ||||||||||||||| |||||||||    
T  35675034 tattaactaactatgatttattcac 35675058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 30634229 - 30634347
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||| || || |||| | || || ||||    
T  30634229 tgttatgaatcaaaggattctatggttttaggtcaaatgcaatggaaagatagattctgtaattctctctatgagtcattactaagaaacaattgtataa 30634328  T
Q  221 aagatatgaaaatagtaca 239  Q
    ||||||   ||||||||||    
T  30634329 aagataatgaaatagtaca 30634347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 35673345 - 35673437
Alignment:
Q  134 aggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataaaagata 226  Q
    |||||||||||||| || |||||||||||||||||||| |||||| |||||||||||| || | || ||| ||||| ||||||||||||||||    
T  35673345 aggattccatggttctaagtcaaatgcaatggaaagatagattgtataattctctctatgaatcatcacagagatataaatgaataaaagata 35673437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 29456284 - 29456381
Alignment:
Q  245 gagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattca 342  Q
    |||||||||||| | |||||||||||||||| |||||| ||||||||||||||   ||||||| ||||||||| |||| |||||||||| || |||||    
T  29456284 gagagttatttacaagggtgagttagtctaaataactcataactacctaaccaattaactaactatagtttacttattgactaactatgattgattca 29456381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 1175223 - 1175148
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagt 196  Q
    ||||| |||| ||||||||| |||||| ||||||||||| |||| |||||| |||||||||||| | |||||||||    
T  1175223 tgttatgaattaaaggattctatggttctaggtcaaatgtaatgaaaagatagattgtgtaattttttctaggagt 1175148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 1173610 - 1173513
Alignment:
Q  129 atcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataaaagata 226  Q
    |||||||||||||||  || ||| |||||||||||| ||| || |||||| ||||||||||||||||| || || |||| | || || ||||||||||    
T  1173610 atcaaaggattccataattctagatcaaatgcaatgaaaaaatagattgtataattctctctaggagtcattaccaagaaacaattgtataaaagata 1173513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 345
Target Start/End: Original strand, 35673477 - 35673512
Alignment:
Q  310 tagtttacatattaactaactatggtttattcacta 345  Q
    ||||||||||||||||||||||||||||||||||||    
T  35673477 tagtttacatattaactaactatggtttattcacta 35673512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 234 - 345
Target Start/End: Original strand, 29598097 - 29598208
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||  | |||||||||||||||||||||||||||||||||    
T  29598097 agtataatggtgagagttatttataggggtgagttagtctaactaactcctaaccacctaacctacaaactaaccatagtttacatattaactaactatg 29598196  T
Q  334 gtttattcacta 345  Q
    ||||||||||||    
T  29598197 gtttattcacta 29598208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 355
Target Start/End: Original strand, 21633313 - 21633436
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    ||||||||| ||| |||||||||||| ||||| ||||| |||||||||| |||| ||||||||  ||||||||||||||||||||||| ||||||| |||    
T  21633313 agtacaatggtgatagttatttatagtggtgaattagtataactaactcctaaccacctaacctaccaactaaccatagtttacatatcaactaacaatg 21633412  T
Q  334 gtttattcac--tactctaatagt 355  Q
    ||||| ||||  ||||||||||||    
T  21633413 gtttactcactatactctaatagt 21633436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 29924733 - 29924665
Alignment:
Q  128 aatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagt 196  Q
    |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29924733 aatcaaaggattccatagttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagt 29924665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 234 - 355
Target Start/End: Original strand, 21631352 - 21631467
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||        |||||||  ||||||||||||||||||||||| ||||||| |||    
T  21631352 agtacaatggtgagggttatttataggggtgagttagtctaactaact--------cctaacctaccaactaaccatagtttacatatcaactaacaatg 21631443  T
Q  334 gtttattcac--tactctaatagt 355  Q
    ||||| ||||  ||||||||||||    
T  21631444 gtttactcactatactctaatagt 21631467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 345
Target Start/End: Original strand, 21631122 - 21631225
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    |||||| || |||| ||||||||||||||||||||||||||||||||||        ||||||  ||||||||||||||||||||||| |||||||||||    
T  21631122 agtacactggtgagggttatttataggggtgagttagtctaactaactc--------ctaacctaccaactaaccatagtttacatatcaactaactatg 21631213  T
Q  334 gtttattcacta 345  Q
    ||||| ||||||    
T  21631214 gtttactcacta 21631225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 21464615 - 21464528
Alignment:
Q  128 aatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattct--ctctaggagttatgacaaagatagaaa 213  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||  |||||||||| || |||||| ||||||    
T  21464615 aatcaaagaattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctctaggagtcattacaaaggtagaaa 21464528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 3233025 - 3232944
Alignment:
Q  216 aataaaagatatgaaaatagtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaacca 297  Q
    |||||||||||  || | | ||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||    
T  3233025 aataaaagataataagaaaatacaatgatgagagttatttataaggatgagttagtgtaacaaactcttaactacctaacca 3232944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 21633093 - 21633179
Alignment:
Q  244 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggttta 338  Q
    |||| |||||||||||||||||| |||||||||||||||        ||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  21633093 tgagggttatttataggggtgagatagtctaactaactc--------ctaacctaccaactaaccatagtttacatatcaactaactatggttta 21633179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 9878298 - 9878384
Alignment:
Q  270 gtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac--tactctaatagt 355  Q
    ||||||||||||| |||||| ||||| |  ||||||||||||||||| |||||||||| |||||||||||||||  ||||||||||||    
T  9878298 gtctaactaactcctaactatctaac-atacaactaaccatagtttatatattaactacctatggtttattcactatactctaatagt 9878384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 29856101 - 29856150
Alignment:
Q  248 agttatttataggggtgagttagtctaactaactcttaactacctaacca 297  Q
    ||||||||||||  ||||||| ||||||||||||| ||||||||||||||    
T  29856101 agttatttatagtagtgagttggtctaactaactcctaactacctaacca 29856150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 30488541 - 30488432
Alignment:
Q  236 tacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggt 335  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||    
T  30488541 tacaatggtgagagctatttataggggtgagttagtctaactaacttttaactatctaaccaaccaacaaaccataatttacatattaactaactatggt 30488442  T
Q  336 ttattcacta 345  Q
    ||||||||||    
T  30488441 ttattcacta 30488432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 15689145 - 15689026
Alignment:
Q  120 gtgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaata 219  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||||||||    
T  15689145 gtgttatgaatcaaaggattccatgattctaggtcaaatgcaatggaaagatagattgtgtaattctctcta-gagtcatcacaaagatagaaatgaata 15689047  T
Q  220 aaagatat-gaaaatagtaca 239  Q
    ||| | || ||||||||||||    
T  15689046 aaaaagatagaaaatagtaca 15689026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 25050932 - 25050859
Alignment:
Q  272 ctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 345  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||    
T  25050932 ctaactaactcttaactacctaaccaagtaactaaccatagtttacatattatctaactatggtttattcacta 25050859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 9373599 - 9373730
Alignment:
Q  149 taggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataaaagatatgaaaatagtacaatgatgaga 248  Q
    ||||||||||||||||||||||| || ||||||||| ||| ||||||| || ||||||||| ||||||||||||||| || | | ||||||||  | |||    
T  9373599 taggtcaaatgcaatggaaagatagaatgtgtaattttctataggagtcataacaaagatataaatgaataaaagatgtg-agagagtacaattgtaaga 9373697  T
Q  249 gttatttataggggtgagttagtctaactaact 281  Q
    |||||||||| | ||  || |||||||||||||    
T  9373698 gttatttataagagtcggtaagtctaactaact 9373730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 34350341 - 34350452
Alignment:
Q  128 aatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataaaagatat 227  Q
    |||||||||||||||||||| |||||||||| ||| ||||| || | || ||||||||||| ||||||| || || |||| | || || ||||||||||     
T  34350341 aatcaaaggattccatggttctaggtcaaatacaacggaaaaatagtttatgtaattctctttaggagtcattactaagaaacaattgtataaaagatag 34350440  T
Q  228 gaaaatagtaca 239  Q
      ||||||||||    
T  34350441 tgaaatagtaca 34350452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 26857895 - 26857816
Alignment:
Q  265 agttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 345  Q
    ||||||||||||||||||||||||||||||||| |||| ||||  || |||||  || | |||||||||| ||||||||||    
T  26857895 agttagtctaactaactcttaactacctaaccaaccaattaactctaatttac-catcatctaactatggcttattcacta 26857816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 42665057 - 42664932
Alignment:
Q  217 ataaaagatatgaaaatagtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagttta 316  Q
    ||||||||||  || ||||||||||  |||||  |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||    
T  42665057 ataaaagataacaagatagtacaattgtgagaactatttataagggtgagttagtctaactaactcttaactacctaaacaaccaactaaccgtagttta 42664958  T
Q  317 catattaactaactatggtttattca 342  Q
    ||||||||||||||||||||||||||    
T  42664957 catattaactaactatggtttattca 42664932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 28395559 - 28395667
Alignment:
Q  127 gaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaa----agatagaaatgaataaaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||    ||||||||||||||||||    
T  28395559 gaatcaaaggattccatggttttaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcacaaagatagatagaaatgaataaaa 28395658  T
Q  223 gatatgaaa 231  Q
    |||||||||    
T  28395659 gatatgaaa 28395667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 234 - 341
Target Start/End: Original strand, 10032679 - 10032785
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    ||||||||  |||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||    
T  10032679 agtacaatagtgagagttatttataggg-tgagttagtctaaccgactcttaactacctaaccaaccaactaaccatagtttacatctcaactaactatg 10032777  T
Q  334 gtttattc 341  Q
    ||||||||    
T  10032778 gtttattc 10032785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 42665175 - 42665247
Alignment:
Q  273 taactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 345  Q
    |||||||||||||||||||||| ||   ||||||||||| |||||||||||||||||||||||||||||||||    
T  42665175 taactaactcttaactacctaaacaaataactaaccataatttacatattaactaactatggtttattcacta 42665247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 234 - 345
Target Start/End: Original strand, 18812662 - 18812774
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtc--taactaactcttaactacctaaccagccaactaaccatagtttacatattaactaacta 331  Q
    ||||||||  |||||| ||||||||| | |||||||||   ||||||||||||||||||||||| |   ||||||||||||||||||||||| |||| ||    
T  18812662 agtacaatagtgagagatatttatagag-tgagttagttcgtaactaactcttaactacctaactaagtaactaaccatagtttacatattatctaatta 18812760  T
Q  332 tggtttattcacta 345  Q
    ||||||||||||||    
T  18812761 tggtttattcacta 18812774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 4847687 - 4847755
Alignment:
Q  120 gtgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctct 188  Q
    |||||| |||| |||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||    
T  4847687 gtgttatgaattaaaggattccatggttctaggtcaaatgtaatggaaagatagattttgtaattctct 4847755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 355
Target Start/End: Original strand, 18807515 - 18807599
Alignment:
Q  272 ctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac--tactctaatagt 355  Q
    |||||||||||||| |||||||||||   ||||||||||||||||||||||| |||  ||||||||||||||  ||||||||||||    
T  18807515 ctaactaactctta-ctacctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaatagt 18807599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 5653307 - 5653358
Alignment:
Q  244 tgagagttatttataggggtgagttagtctaactaactcttaactacctaac 295  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  5653307 tgagacttatttataggggtgagttagtataactaactcctaactacctaac 5653358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 345
Target Start/End: Original strand, 8818744 - 8818853
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    |||| |||||| |||||| ||||||  | ||||||||||||||||| | |||||||| |||||| | ||| |||  |||||||| ||||||||||| |||    
T  8818744 agtataatgataagagtt-tttataaagatgagttagtctaactaatttttaactacttaaccaacaaacaaactctagtttac-tattaactaaccatg 8818841  T
Q  334 gtttattcacta 345  Q
     |||||||||||    
T  8818842 atttattcacta 8818853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 344
Target Start/End: Original strand, 19223142 - 19223181
Alignment:
Q  305 aaccatagtttacatattaactaactatggtttattcact 344  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  19223142 aaccatagtttatatattaactaactatggtttattcact 19223181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 309
Target Start/End: Complemental strand, 8678640 - 8678562
Alignment:
Q  231 aatagtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaacca 309  Q
    ||||||| |||  ||| ||||||||||||||||| ||||| ||||||||||  |||||||||| ||| ||||| |||||    
T  8678640 aatagtataatagtgaaagttatttataggggtgggttagactaactaactgctaactacctagccaaccaaccaacca 8678562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 245 - 355
Target Start/End: Original strand, 9093 - 9205
Alignment:
Q  245 gagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac- 343  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||||     
T  9093 gagagttatttataggggtgagttagtgtaactaactcctaactacctaaccaaacaactaaccatagttcacatataaactaactatggtttattcact 9192  T
Q  344 -tactctaatagt 355  Q
     ||||||||||||    
T  9193 atactctaatagt 9205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 1284937 - 1284831
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    ||||||||  ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||    
T  1284937 agtacaatagtgatagttatttataggg-tgagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttacatctcaactaactatg 1284839  T
Q  334 gtttattc 341  Q
    ||||||||    
T  1284838 gtttattc 1284831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 44782182 - 44782301
Alignment:
Q  120 gtgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaata 219  Q
    |||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || || |||| | || || |||    
T  44782182 gtgttatgaattaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtata 44782281  T
Q  220 aaagatatgaaaatagtaca 239  Q
    |||||||   ||||||||||    
T  44782282 aaagataatgaaatagtaca 44782301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 46679812 - 46679708
Alignment:
Q  121 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattctctctaggagttatgacaaagatagaaatgaataa 220  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| || || |||| | || || ||||    
T  46679812 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaattgtataa 46679713  T
Q  221 aagat 225  Q
    |||||    
T  46679712 aagat 46679708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 33072845 - 33072760
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacata 320  Q
    ||||||||  ||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33072845 agtacaatagtgagagttatttataagggtgagtcag-ctaactaactcttaactacctaaccaaccaactaaccatagtttacata 33072760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 10653594 - 10653488
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    ||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    ||||||||||||| ||||| ||| ||||||||||     
T  10653594 agtacaattgtgagagctatttacaggggtgagttagtctaactaactcttaaccacctaa----ccaactaaccataatttacgtataaactaactata 10653499  T
Q  334 gtttattcact 344  Q
     ||||||||||    
T  10653498 ctttattcact 10653488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 345
Target Start/End: Complemental strand, 41892178 - 41892084
Alignment:
Q  250 ttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 345  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||| |||| || || ||| |||||||| ||||||||||||||    
T  41892178 ttatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatacttcacctatcaactaact-tggtttattcacta 41892084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 9582 - 9476
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    ||||||||  ||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||||||||    
T  9582 agtacaatagtgatagttatttataggg-tgagttagtctaactaacacttaactacctaaccaaccaactaaccatagtttacatctcaactaactatg 9484  T
Q  334 gtttattc 341  Q
    ||||||||    
T  9483 gtttattc 9476  T

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Target: scaffold0245; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 11204 - 11098
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    ||||||||  ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||||||||    
T  11204 agtacaatagtgatagttatttataggg-tgagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttatatctcaactaactatg 11106  T
Q  334 gtttattc 341  Q
    ||||||||    
T  11105 gtttattc 11098  T

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Target: scaffold0229 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 9910 - 9804
Alignment:
Q  234 agtacaatgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatg 333  Q
    ||||||||  ||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||||||||    
T  9910 agtacaatagtgatagttatttataggg-tgagttagtctaactaacacttaactacctaaccaaccaactaaccatagtttacatctcaactaactatg 9812  T
Q  334 gtttattc 341  Q
    ||||||||    
T  9811 gtttattc 9804  T

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Target: scaffold0160 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 28492 - 28412
Alignment:
Q  262 gtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattca 342  Q
    |||||||| ||||||||||||||||||   |||||| ||||||||||||||||||| ||| ||||||||||||||||||||    
T  28492 gtgagttaatctaactaactcttaactgtataaccaaccaactaaccatagtttacctatcaactaactatggtttattca 28412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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