View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_48 (Length: 434)
Name: NF0856_high_48
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 77 - 422
Target Start/End: Original strand, 46568463 - 46568808
Alignment:
| Q |
77 |
tatcaagtggtggacacattggccttgtgtctagaaatgcaatttcacgaaactatcttcaacgttctttttccaaaaaattaagcgtcattcacaattt |
176 |
Q |
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| T |
46568463 |
tatcaagtgatggacacattggcattgtatctagaaatgcaatttcacgaaactatcttcaacgttctttttccaaaaaattaagcgtcattcacaattt |
46568562 |
T |
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| Q |
177 |
taacactacattaatttcagcaatgagtgctccaaactctgattccttatttcattctcttcatcttctataagatccttcatccttaatttactccaat |
276 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46568563 |
taacactacattaatttcagcaatgagtcctccaaactctgattccttatttcattctcttcatcttctataagatccttcatccttaatttactccaat |
46568662 |
T |
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| Q |
277 |
gcacatgaactattttcagtgacattgaaatatcattcatcttataatttgccaatttacaagcacaagataatcaatgggttgtcctgattgagtaaca |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46568663 |
gcacatgaactattttcagtgacattgaaatatcattcatcttataatttgccaatttacaagcacaagataatcaatgggttgtcctgattgagtaaca |
46568762 |
T |
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| Q |
377 |
acacgtgatactttacttacacacctaccttgccaactctcatatt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46568763 |
acacgtgatactttacttacacacctaccttgccaactctaatatt |
46568808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 46568394 - 46568427
Alignment:
| Q |
47 |
ttattacccttcttgggtgctcttcaattttatc |
80 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
46568394 |
ttattacccttcttgggtgctcttcaattttatc |
46568427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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