View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_5 (Length: 764)
Name: NF0856_high_5
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 86 - 674
Target Start/End: Original strand, 37904133 - 37904716
Alignment:
| Q |
86 |
tctccaaacagcaggagctaccattgatatcaaagatttgttgagatacaagcgtattaaatgattgatatattagtaatagcttactagcacaaagcag |
185 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37904133 |
tctccaaacagcaggagctatcattgatatcaaagatttgttgagatacaagcatattaaatgattaatatattagtaatagcttactagcacaaagcag |
37904232 |
T |
|
| Q |
186 |
ctataatgtttgctaaataaatcacatttcctagtcctatggattgctttaaaagaaagaaagaaaaatatgtatgtcaccttagtaagcaaataactgg |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37904233 |
ctataatgtttgctaaataaatcacatttcctagtcctatggattgctttaaaagaaagaaagaaaaatatgtatgtcaccttagtaagcaaataactgg |
37904332 |
T |
|
| Q |
286 |
ctgcaatgccccagccagaagaacttctctcttaatttctggcgaagaatggaccagatttccaatcacgccaacctacnnnnnnnnnnggctcattcag |
385 |
Q |
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| T |
37904333 |
ctgtaatgccccagccagaagaacttctctcttaatttctggcgaagaatggaccagatttccaatcacgccaacctacaaaaaaaa--ggctcattcag |
37904430 |
T |
|
| Q |
386 |
cttgttcttgtagcttggaactctctataaagcaaaatttaatataaggggttgtatgaattcagttgtgtctaaccgcttcataatgtattgaggcatc |
485 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37904431 |
ctt---cttgtagcttggaactctctataaagcaaaatttaatataaggggttatatgaattcagttgtgtctaaccgcttcataatgtattgaggcatc |
37904527 |
T |
|
| Q |
486 |
tgctgatccaagcattagtacaagagttggcaaagcattgcattcaataatctgcaattttcattcttgtaagcaactataccaaaagaatccaccgtag |
585 |
Q |
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| T |
37904528 |
tgctgatccaagcattagtacaagagttggcaacgcattgcattcaataatctgcaattttcattcttgtaagcaactataccaaaagaatccaccgtag |
37904627 |
T |
|
| Q |
586 |
taagttcctgtgaaaaatcaagtacctgatttttgttctcagcgttttgaaatgcgagagtccgcaaggcacctgcagctgctctctgt |
674 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37904628 |
taagttcctgtgaaaaatcaagtacctgatttttgttctcagcattttgaaatgcgagagtccgcaaggcacctgcagctgctctctgt |
37904716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 86 - 674
Target Start/End: Original strand, 37910644 - 37911227
Alignment:
| Q |
86 |
tctccaaacagcaggagctaccattgatatcaaagatttgttgagatacaagcgtattaaatgattgatatattagtaatagcttactagcacaaagcag |
185 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37910644 |
tctccaaacagcaggagctatcattgatatcaaagatttgttgagatacaagcatattaaatgattaatatattagtaatagcttactagcacaaagcag |
37910743 |
T |
|
| Q |
186 |
ctataatgtttgctaaataaatcacatttcctagtcctatggattgctttaaaagaaagaaagaaaaatatgtatgtcaccttagtaagcaaataactgg |
285 |
Q |
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| T |
37910744 |
ctataatgtttgctaaataaatcacatttcctagtcctatggattgctttaaaagaaagaaagaaaaatatgtatgtcaccttagtaagcaaataactgg |
37910843 |
T |
|
| Q |
286 |
ctgcaatgccccagccagaagaacttctctcttaatttctggcgaagaatggaccagatttccaatcacgccaacctacnnnnnnnnnnggctcattcag |
385 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37910844 |
ctgtaatgccccagccagaagaacttctctcttaatttctggcgaagaatggaccagatttccaatcacgccaacctacaaaaaaaa--ggctcattcag |
37910941 |
T |
|
| Q |
386 |
cttgttcttgtagcttggaactctctataaagcaaaatttaatataaggggttgtatgaattcagttgtgtctaaccgcttcataatgtattgaggcatc |
485 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37910942 |
ctt---cttgtagcttggaactctctataaagcaaaatttaatataaggggttatatgaattcagttgtgtctaaccgcttcataatgtattgaggcatc |
37911038 |
T |
|
| Q |
486 |
tgctgatccaagcattagtacaagagttggcaaagcattgcattcaataatctgcaattttcattcttgtaagcaactataccaaaagaatccaccgtag |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911039 |
tgctgatccaagcattagtacaagagttggcaacgcattgcattcaataatctgcaattttcattcttgtaagcaactataccaaaagaatccaccgtag |
37911138 |
T |
|
| Q |
586 |
taagttcctgtgaaaaatcaagtacctgatttttgttctcagcgttttgaaatgcgagagtccgcaaggcacctgcagctgctctctgt |
674 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911139 |
taagttcctgtgaaaaatcaagtacctgatttttgttctcagcattttgaaatgcgagagtccgcaaggcacctgcagctgctctctgt |
37911227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 32750136 - 32750209
Alignment:
| Q |
16 |
atgaggttgctaagagaaaacattagcacttgtttgatcaaactcaaactatattattccaaaataaggttctc |
89 |
Q |
| |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32750136 |
atgaggttgctaagagaaaaaatgggcacttgtttgatcaaactcaaactatattatttcaaaataaggttctc |
32750209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 50058786 - 50058853
Alignment:
| Q |
20 |
ggttgctaagagaaaacattagcacttgtttgatcaaactcaaactatattattccaaaataaggttc |
87 |
Q |
| |
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||||||| |||||||| || ||| ||||| |||||||||| | |||| ||||||||||||||||||| |
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| T |
50058786 |
ggttgctgagagaaaaaatgggcatttgttagatcaaactcgagctatgttattccaaaataaggttc |
50058853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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