View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_51 (Length: 420)

Name: NF0856_high_51
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_51
NF0856_high_51
[»] chr2 (41 HSPs)
chr2 (88-406)||(5676747-5677067)
chr2 (240-312)||(42438080-42438153)
chr2 (341-404)||(24592833-24592897)
chr2 (341-405)||(26400760-26400824)
chr2 (341-404)||(29544637-29544701)
chr2 (341-406)||(27848165-27848232)
chr2 (351-406)||(31815885-31815940)
chr2 (341-404)||(10735818-10735882)
chr2 (352-404)||(20565074-20565126)
chr2 (344-391)||(25186232-25186280)
chr2 (351-391)||(42791318-42791358)
chr2 (352-404)||(43117189-43117241)
chr2 (351-391)||(44694711-44694751)
chr2 (351-406)||(2256979-2257034)
chr2 (351-406)||(23250318-23250373)
chr2 (353-404)||(24593386-24593437)
chr2 (351-406)||(41859860-41859915)
chr2 (342-391)||(9547397-9547447)
chr2 (343-404)||(10332264-10332326)
chr2 (354-404)||(12124555-12124605)
chr2 (353-391)||(23407018-23407056)
chr2 (341-390)||(29896281-29896331)
chr2 (369-406)||(4897551-4897588)
chr2 (369-406)||(4944945-4944982)
chr2 (351-404)||(8781648-8781701)
chr2 (351-404)||(20120719-20120772)
chr2 (353-390)||(22520241-22520278)
chr2 (369-406)||(26133536-26133573)
chr2 (354-391)||(36359337-36359374)
chr2 (369-406)||(37320533-37320570)
chr2 (341-389)||(44810730-44810779)
chr2 (351-391)||(660820-660860)
chr2 (355-391)||(8091160-8091196)
chr2 (351-391)||(12413516-12413556)
chr2 (351-391)||(12425576-12425616)
chr2 (370-406)||(18324911-18324947)
chr2 (370-406)||(22359013-22359049)
chr2 (351-391)||(22709108-22709148)
chr2 (351-391)||(29734714-29734754)
chr2 (352-388)||(31543038-31543074)
chr2 (369-405)||(32015834-32015870)
[»] chr7 (35 HSPs)
chr7 (153-319)||(2994542-2994710)
chr7 (206-311)||(16378632-16378736)
chr7 (212-308)||(1879500-1879597)
chr7 (206-306)||(1903270-1903371)
chr7 (232-314)||(2814607-2814690)
chr7 (351-404)||(18714458-18714511)
chr7 (344-404)||(10244737-10244797)
chr7 (351-406)||(19599153-19599208)
chr7 (343-404)||(27833390-27833452)
chr7 (351-404)||(27462434-27462487)
chr7 (351-404)||(46987096-46987149)
chr7 (369-406)||(48007563-48007600)
chr7 (341-404)||(19416524-19416588)
chr7 (353-404)||(7872748-7872799)
chr7 (352-391)||(20085758-20085797)
chr7 (355-406)||(23413048-23413099)
chr7 (341-390)||(3671848-3671898)
chr7 (343-404)||(5579703-5579765)
chr7 (341-406)||(21322183-21322249)
chr7 (352-390)||(25602941-25602979)
chr7 (356-406)||(37230031-37230081)
chr7 (233-266)||(2476617-2476650)
chr7 (359-404)||(2618689-2618734)
chr7 (359-404)||(37624553-37624598)
chr7 (355-404)||(39280820-39280869)
chr7 (233-294)||(1780714-1780777)
chr7 (344-391)||(3830091-3830139)
chr7 (370-414)||(4340127-4340171)
chr7 (355-391)||(5041362-5041398)
chr7 (354-390)||(7670458-7670494)
chr7 (355-391)||(19626527-19626563)
chr7 (341-404)||(31038509-31038573)
chr7 (355-399)||(40867045-40867089)
chr7 (355-391)||(46737808-46737844)
chr7 (351-391)||(48629063-48629103)
[»] chr3 (42 HSPs)
chr3 (147-311)||(41507800-41507964)
chr3 (341-404)||(52904131-52904194)
chr3 (232-304)||(8676331-8676404)
chr3 (341-406)||(38130946-38131012)
chr3 (351-406)||(48849761-48849815)
chr3 (351-404)||(25441498-25441551)
chr3 (341-406)||(25505689-25505754)
chr3 (344-388)||(21160078-21160122)
chr3 (341-404)||(25340911-25340975)
chr3 (351-391)||(34899120-34899160)
chr3 (352-404)||(35191816-35191868)
chr3 (341-391)||(4601867-4601918)
chr3 (351-406)||(7464489-7464544)
chr3 (351-406)||(10922306-10922361)
chr3 (341-391)||(41817522-41817573)
chr3 (353-404)||(45431958-45432009)
chr3 (351-406)||(51250231-51250286)
chr3 (352-406)||(21914070-21914124)
chr3 (232-281)||(25030570-25030620)
chr3 (354-404)||(35863814-35863864)
chr3 (341-389)||(913587-913636)
chr3 (353-406)||(5349536-5349589)
chr3 (353-414)||(16663236-16663297)
chr3 (354-399)||(21245808-21245853)
chr3 (343-391)||(25727956-25728005)
chr3 (351-404)||(48315022-48315075)
chr3 (354-391)||(48656900-48656937)
chr3 (351-404)||(52119386-52119439)
chr3 (351-404)||(54230097-54230150)
chr3 (351-391)||(1111839-1111879)
chr3 (351-391)||(8075808-8075848)
chr3 (354-406)||(8127471-8127523)
chr3 (355-391)||(8238587-8238623)
chr3 (356-404)||(10926479-10926527)
chr3 (351-391)||(16792972-16793012)
chr3 (370-406)||(17588370-17588406)
chr3 (359-399)||(28266731-28266771)
chr3 (341-404)||(29631196-29631260)
chr3 (355-391)||(32753851-32753887)
chr3 (351-391)||(32843260-32843300)
chr3 (370-406)||(43815524-43815560)
chr3 (355-391)||(49975807-49975843)
[»] chr1 (46 HSPs)
chr1 (233-313)||(29241521-29241601)
chr1 (246-311)||(37849599-37849664)
chr1 (341-404)||(3509928-3509992)
chr1 (352-406)||(29800541-29800595)
chr1 (351-404)||(8269366-8269419)
chr1 (341-404)||(17139504-17139568)
chr1 (351-391)||(25532996-25533036)
chr1 (341-404)||(34521177-34521241)
chr1 (341-404)||(42045359-42045423)
chr1 (359-403)||(45481504-45481548)
chr1 (344-404)||(52592418-52592478)
chr1 (351-406)||(6000141-6000196)
chr1 (341-388)||(10356702-10356749)
chr1 (351-390)||(11681247-11681286)
chr1 (351-406)||(12212303-12212358)
chr1 (351-390)||(12268982-12269021)
chr1 (240-294)||(19709419-19709474)
chr1 (341-391)||(27533266-27533317)
chr1 (356-391)||(44641550-44641585)
chr1 (343-388)||(3481587-3481633)
chr1 (240-305)||(4856547-4856613)
chr1 (341-391)||(29251777-29251827)
chr1 (354-404)||(29739347-29739397)
chr1 (232-294)||(1972310-1972374)
chr1 (351-404)||(5907809-5907862)
chr1 (369-406)||(9639833-9639870)
chr1 (354-399)||(10132445-10132490)
chr1 (351-404)||(18166612-18166665)
chr1 (369-406)||(28039876-28039913)
chr1 (359-404)||(38448872-38448917)
chr1 (351-404)||(39302955-39303008)
chr1 (369-406)||(49875615-49875652)
chr1 (340-404)||(50638902-50638967)
chr1 (369-406)||(50849089-50849126)
chr1 (351-391)||(2994781-2994821)
chr1 (351-391)||(8736458-8736498)
chr1 (355-391)||(16033452-16033488)
chr1 (351-391)||(16307672-16307712)
chr1 (356-404)||(19620586-19620634)
chr1 (351-391)||(22335381-22335421)
chr1 (352-404)||(26803450-26803502)
chr1 (344-391)||(33020033-33020081)
chr1 (344-392)||(41362641-41362689)
chr1 (351-391)||(41973278-41973318)
chr1 (341-404)||(42888585-42888649)
chr1 (355-399)||(46707887-46707931)
[»] scaffold0501 (1 HSPs)
scaffold0501 (179-319)||(9708-9848)
[»] chr6 (24 HSPs)
chr6 (147-311)||(29890570-29890737)
chr6 (351-406)||(8569717-8569772)
chr6 (344-406)||(24373700-24373763)
chr6 (351-404)||(20744148-20744201)
chr6 (353-406)||(31971537-31971590)
chr6 (341-404)||(7082979-7083043)
chr6 (351-406)||(2726415-2726470)
chr6 (341-399)||(17151251-17151310)
chr6 (369-404)||(23629853-23629888)
chr6 (344-406)||(8831215-8831277)
chr6 (354-404)||(33824891-33824941)
chr6 (351-404)||(655747-655800)
chr6 (351-404)||(788876-788929)
chr6 (351-404)||(4455594-4455647)
chr6 (353-406)||(9977065-9977118)
chr6 (269-314)||(13560853-13560898)
chr6 (351-404)||(14918298-14918351)
chr6 (351-404)||(29740492-29740545)
chr6 (354-406)||(8629697-8629749)
chr6 (354-390)||(15155759-15155795)
chr6 (344-404)||(18254092-18254152)
chr6 (341-388)||(27907938-27907986)
chr6 (351-399)||(28898871-28898919)
chr6 (351-391)||(33976267-33976307)
[»] chr8 (31 HSPs)
chr8 (232-311)||(33650593-33650673)
chr8 (341-404)||(27587231-27587295)
chr8 (351-406)||(7869639-7869694)
chr8 (341-391)||(12748924-12748975)
chr8 (341-391)||(32051519-32051570)
chr8 (351-404)||(444423-444476)
chr8 (351-404)||(30623303-30623356)
chr8 (354-414)||(13105094-13105154)
chr8 (341-404)||(24838157-24838221)
chr8 (344-384)||(36428685-36428725)
chr8 (341-391)||(12800887-12800938)
chr8 (353-404)||(39821894-39821945)
chr8 (232-314)||(42525919-42526002)
chr8 (341-391)||(8704507-8704557)
chr8 (341-390)||(19260566-19260616)
chr8 (352-390)||(33105415-33105453)
chr8 (354-404)||(42208470-42208520)
chr8 (351-404)||(1244703-1244756)
chr8 (351-404)||(7996950-7997003)
chr8 (369-406)||(8442503-8442540)
chr8 (352-405)||(18533678-18533731)
chr8 (351-404)||(19163534-19163587)
chr8 (233-266)||(19452490-19452523)
chr8 (233-266)||(19528553-19528586)
chr8 (359-404)||(19778075-19778120)
chr8 (345-406)||(32421577-32421638)
chr8 (351-391)||(8881298-8881338)
chr8 (360-404)||(15438463-15438507)
chr8 (360-404)||(15529767-15529811)
chr8 (341-392)||(27426673-27426725)
chr8 (351-387)||(30176417-30176453)
[»] chr4 (50 HSPs)
chr4 (346-399)||(1753345-1753398)
chr4 (344-398)||(40901128-40901182)
chr4 (206-312)||(13817341-13817448)
chr4 (351-414)||(22630358-22630421)
chr4 (354-404)||(7230290-7230340)
chr4 (341-406)||(43034329-43034395)
chr4 (354-404)||(43782306-43782356)
chr4 (351-404)||(8027395-8027448)
chr4 (351-404)||(11949761-11949814)
chr4 (351-404)||(56551590-56551643)
chr4 (241-294)||(4225508-4225563)
chr4 (341-404)||(9946437-9946501)
chr4 (359-403)||(10006351-10006395)
chr4 (352-404)||(20383498-20383550)
chr4 (341-404)||(28435235-28435299)
chr4 (354-406)||(29908064-29908116)
chr4 (351-391)||(49041979-49042019)
chr4 (341-404)||(56497595-56497659)
chr4 (352-391)||(675941-675980)
chr4 (356-391)||(16737094-16737129)
chr4 (355-406)||(17423179-17423230)
chr4 (351-390)||(19479475-19479514)
chr4 (351-406)||(19908700-19908755)
chr4 (353-404)||(20799394-20799445)
chr4 (351-406)||(21318251-21318306)
chr4 (232-306)||(21639435-21639510)
chr4 (349-388)||(44815967-44816006)
chr4 (352-399)||(49473660-49473707)
chr4 (356-391)||(55061060-55061095)
chr4 (354-404)||(21317339-21317389)
chr4 (341-390)||(54857602-54857652)
chr4 (351-404)||(14577505-14577558)
chr4 (351-404)||(16431626-16431679)
chr4 (341-390)||(21449886-21449935)
chr4 (369-406)||(24488430-24488467)
chr4 (351-404)||(24785460-24785513)
chr4 (351-404)||(24822753-24822806)
chr4 (351-396)||(37921764-37921809)
chr4 (353-406)||(43722773-43722826)
chr4 (369-406)||(45029621-45029658)
chr4 (359-404)||(46676504-46676549)
chr4 (351-388)||(54294420-54294457)
chr4 (369-406)||(56204955-56204992)
chr4 (352-388)||(6087773-6087809)
chr4 (351-391)||(11198351-11198391)
chr4 (351-391)||(21114303-21114343)
chr4 (355-391)||(25783451-25783487)
chr4 (351-391)||(38374980-38375020)
chr4 (351-391)||(47806254-47806294)
chr4 (355-391)||(49953405-49953441)
[»] chr5 (32 HSPs)
chr5 (341-404)||(6489017-6489081)
chr5 (354-390)||(19518601-19518637)
chr5 (341-404)||(34436861-34436925)
chr5 (344-391)||(12190015-12190062)
chr5 (341-391)||(22522788-22522839)
chr5 (341-406)||(11720902-11720967)
chr5 (341-404)||(4009876-4009941)
chr5 (351-404)||(5846039-5846092)
chr5 (341-404)||(3445234-3445298)
chr5 (354-406)||(4763187-4763239)
chr5 (344-388)||(5614791-5614835)
chr5 (341-404)||(15889421-15889485)
chr5 (344-388)||(21139139-21139183)
chr5 (351-391)||(40715947-40715987)
chr5 (341-391)||(6624799-6624850)
chr5 (351-406)||(20721058-20721113)
chr5 (352-406)||(31877936-31877990)
chr5 (353-406)||(8882399-8882452)
chr5 (369-406)||(11647205-11647242)
chr5 (351-404)||(16133063-16133116)
chr5 (369-406)||(22498950-22498987)
chr5 (369-406)||(34206235-34206272)
chr5 (369-406)||(39914909-39914946)
chr5 (369-406)||(43108577-43108614)
chr5 (153-233)||(15816732-15816812)
chr5 (351-387)||(24408522-24408558)
chr5 (341-404)||(26655474-26655538)
chr5 (341-404)||(26927059-26927123)
chr5 (351-391)||(32200445-32200485)
chr5 (351-391)||(34191456-34191496)
chr5 (352-404)||(42168944-42168996)
chr5 (354-390)||(42473918-42473954)
[»] scaffold0262 (1 HSPs)
scaffold0262 (344-406)||(15920-15983)
[»] scaffold1127 (1 HSPs)
scaffold1127 (352-390)||(1164-1202)
[»] scaffold0238 (1 HSPs)
scaffold0238 (352-406)||(25397-25451)
[»] scaffold0021 (1 HSPs)
scaffold0021 (341-406)||(161149-161215)
[»] scaffold0126 (1 HSPs)
scaffold0126 (369-406)||(34904-34941)
[»] scaffold0026 (1 HSPs)
scaffold0026 (359-404)||(75335-75380)
[»] scaffold0005 (1 HSPs)
scaffold0005 (351-404)||(239817-239870)
[»] scaffold0004 (1 HSPs)
scaffold0004 (240-293)||(119773-119826)
[»] scaffold0735 (1 HSPs)
scaffold0735 (341-404)||(1538-1602)
[»] scaffold0533 (1 HSPs)
scaffold0533 (370-406)||(8868-8904)
[»] scaffold0334 (1 HSPs)
scaffold0334 (352-404)||(5192-5244)
[»] scaffold0050 (1 HSPs)
scaffold0050 (351-391)||(53378-53418)
[»] scaffold0044 (1 HSPs)
scaffold0044 (356-404)||(42337-42385)
[»] scaffold0016 (1 HSPs)
scaffold0016 (355-391)||(99060-99096)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 88 - 406
Target Start/End: Complemental strand, 5677067 - 5676747
Alignment:
Q  88 catgagagccatttcttttagttttaggaatattttgagcatctcactcttttccttcatggatcgtaatcttcctttgcaaactcaaaattcttctatt 187  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5677067 catgagagccatttcttatagttttaggaatattttgagcatctcactcttttccttcatggatcgtaatcttcctttgcaaactcaaaattcttctatt 5676968  T
Q  188 gattattgcaactatgcattcattcatttcttctcttatttcta-ttttgtgtttaagctcatcatgagctaaacccctttttggttaagacatgatgat 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5676967 gattattgcaactatgctttcattcatttcttctcttatttctatttttgtgtttaagctcatcatgagctaaacccctttttggttaagacatgatgat 5676868  T
Q  287 gttatgattatgtttgcataagtttagattgttcaatactcaag-nnnnnnnnngttggtggtggcggggtttgaacccccggccttgcatatattatgc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||  |||||||||||||||||    
T  5676867 gttatgattatgtttgcataagtttagattgttcaatactcaagttcttttttttttggtggtggcggggtttgaacccccacccttgcatatattatgc 5676768  T
Q  386 attgtcattaccaaatgagtt 406  Q
    |||||||||||||| ||||||    
T  5676767 attgtcattaccaactgagtt 5676747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 42438080 - 42438153
Alignment:
Q  240 ttaagctcatcatgagctaaaccccttt-ttggttaagacatgatgatgttatgattatgtttgcataagttta 312  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| ||   |||||||||| ||||||||||||||    
T  42438080 ttaagctcatcatgagctaaacccctttagtggttgagacatggtgcaattatgattatatttgcataagttta 42438153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 24592833 - 24592897
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  24592833 ttggtggtggccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgag 24592897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 26400824 - 26400760
Alignment:
Q  341 ttggtggtggcggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagt 405  Q
    ||||| ||||||| |||||||| |||  ||||||||||||||||||||||| ||||||| |||||    
T  26400824 ttggtcgtggcggagtttgaacacccaaccttgcatatattatgcattgtccttaccaactgagt 26400760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 29544701 - 29544637
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  29544701 ttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccctaccaattgag 29544637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 27848232 - 27848165
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgca-ttgtcattaccaaatgagtt 406  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||| |||||| |||||| ||||||    
T  27848232 ttggtggtggccggggtttgaaccccggaccttgcatatattatgcatttgtcaataccaactgagtt 27848165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 31815885 - 31815940
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||| | |||||||||||||||||||||||  |||||| ||||||    
T  31815885 cggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagtt 31815940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 10735818 - 10735882
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||||| |||  |||||| ||||    
T  10735818 ttggtggtggccggggtttgaaccccggaccttgcatatattatgcatcgtccctaccaactgag 10735882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 20565074 - 20565126
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  20565074 ggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgag 20565126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 25186232 - 25186280
Alignment:
Q  344 gtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||| |||||||||||||| | |||||||||||||||||||||||    
T  25186232 gtggtggctggggtttgaaccccggaccttgcatatattatgcattgtc 25186280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 42791358 - 42791318
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  42791358 cggggtttgaaccccggaccttgcatatattatgcattgtc 42791318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 43117189 - 43117241
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| | | ||||||||||||||||||||||| ||||||| ||||    
T  43117189 ggggtttgaacctcagaccttgcatatattatgcattgtccttaccaactgag 43117241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 44694751 - 44694711
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  44694751 cggggtttgaaccccgagccttgcatatattatgcattgtc 44694711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 2257034 - 2256979
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||| ||||||| | |||||||||||||||||||||||  |||||| ||||||    
T  2257034 cggggttcgaaccccagaccttgcatatattatgcattgtccataccaactgagtt 2256979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 23250318 - 23250373
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||  | ||||||||||||||||||||||  ||||||| ||||||    
T  23250318 cggggtttgaaccctggaccttgcatatattatgcattgttcttaccaactgagtt 23250373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 24593437 - 24593386
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||| ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  24593437 gggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgag 24593386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 41859915 - 41859860
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||| | |||||||||| ||||||||||||  |||||| ||||||    
T  41859915 cggggtttgaaccccagaccttgcatattttatgcattgtccataccaactgagtt 41859860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 9547397 - 9547447
Alignment:
Q  342 tggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||| |||||||||||||||   |||||||||||||||||||||||    
T  9547397 tggtggtggtcggggtttgaaccccaaaccttgcatatattatgcattgtc 9547447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 10332264 - 10332326
Alignment:
Q  343 ggtggtggcggggttt-gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||||||| ||||| ||| |||| |||||||||||||||||| ||| ||| ||||    
T  10332264 ggtggtggcggggttttgaacctccgaccttccatatattatgcattgtccttatcaactgag 10332326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 12124605 - 12124555
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||| ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  12124605 ggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgag 12124555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 23407018 - 23407056
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  23407018 gggtttgaaccccagaccttgcatatattatgcattgtc 23407056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 29896281 - 29896331
Alignment:
Q  341 ttggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    |||||||||| |||||||||||||||   ||||||||||||||||||||||    
T  29896281 ttggtggtggtcggggtttgaaccccaaaccttgcatatattatgcattgt 29896331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 4897588 - 4897551
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  4897588 ccttgcatatattatgcattgtccttaccaactgagtt 4897551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 4944982 - 4944945
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  4944982 ccttgcatatattatgcattgtccttaccaactgagtt 4944945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 8781648 - 8781701
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | ||||||||| |||||||||||||  |||||| ||||    
T  8781648 cggggtttgaaccccggaccttgcatacattatgcattgtccataccaactgag 8781701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 20120719 - 20120772
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||| ||||||||||   ||||||||||||||||||||||| ||||||| ||||    
T  20120719 cgggatttgaaccccgaaccttgcatatattatgcattgtccttaccaactgag 20120772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 22520278 - 22520241
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgt 390  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  22520278 gggtttgaacctcaggccttgcatatattatgcattgt 22520241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 26133536 - 26133573
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  26133536 ccttgcatatattatgcattgtccttaccaactgagtt 26133573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 36359374 - 36359337
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||||| | |||||||||||||||||||||||    
T  36359374 ggtttgaaccccggaccttgcatatattatgcattgtc 36359337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 37320533 - 37320570
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  37320533 ccttgcatatattatgcattgtctttaccaactgagtt 37320570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 44810779 - 44810730
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattg 389  Q
    ||||||||||| |||||||||||||| | |||||||||||||||| ||||    
T  44810779 ttggtggtggctggggtttgaaccccggaccttgcatatattatgtattg 44810730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 660820 - 660860
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||  | |||||||||||||||||||||||    
T  660820 cggggtttgaaccctggaccttgcatatattatgcattgtc 660860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 8091160 - 8091196
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| | |||||||||||||||||||||||    
T  8091160 gtttgaaccccggaccttgcatatattatgcattgtc 8091196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 12413556 - 12413516
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||| | | |||||||||||||||||||||||    
T  12413556 cggggtttgaacctcagaccttgcatatattatgcattgtc 12413516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 12425616 - 12425576
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||| | | |||||||||||||||||||||||    
T  12425616 cggggtttgaacctcagaccttgcatatattatgcattgtc 12425576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 18324911 - 18324947
Alignment:
Q  370 cttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  18324911 cttgcatatattatgcattgtccttaccaactgagtt 18324947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 22359049 - 22359013
Alignment:
Q  370 cttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  22359049 cttgcatatattatgcattgtccttaccaactgagtt 22359013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 22709148 - 22709108
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||| ||||||||||||    
T  22709148 cggggtttgaaccccggaccttgcatattttatgcattgtc 22709108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 29734754 - 29734714
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||| | | |||||||||||||||||||||||    
T  29734754 cggggtttgaaccacggaccttgcatatattatgcattgtc 29734714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 388
Target Start/End: Complemental strand, 31543074 - 31543038
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcatt 388  Q
    |||||||||||||| | ||||||||||||||||||||    
T  31543074 ggggtttgaaccccggaccttgcatatattatgcatt 31543038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 32015870 - 32015834
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagt 405  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  32015870 ccttgcatatattatgcattgtcattatcaagtgagt 32015834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 319
Target Start/End: Original strand, 2994542 - 2994710
Alignment:
Q  153 gtaatcttcctttgcaaactcaaaattcttctattgattattgcaactatgcattcattcatttcttctcttatttctatttt-gtgtttaagctcatca 251  Q
    ||||| |||||||| ||| || ||| | ||||||| || ||||||| ||||  |||||||| || ||||||  |||| ||||| ||||||||||||||||    
T  2994542 gtaatattcctttgtaaattctaaactattctattaatcattgcaattatgttttcattcagttattctctattttccatttttgtgtttaagctcatca 2994641  T
Q  252 tgagctaaacccctttt-tggttaagacatgatgatgttatgattatgtttgcataagtttagattgtt 319  Q
    |||| |||| ||||||  | |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  2994642 tgaggtaaatccctttaatagttaagacatgatgatgttatgattatgtttgaataagtttagaatgtt 2994710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 206 - 311
Target Start/End: Complemental strand, 16378736 - 16378632
Alignment:
Q  206 ttcattcatttcttctcttatttctatttt-gtgtttaagctcatcatgagctaaacccctttttggttaagacatgatgatgttatgattatgtttgca 304  Q
    |||||||| ||||| ||||| ||||||||| |||||||| |||||||||||||||||| |||||||||| |||| | |||| ||||| |  |||||||||    
T  16378736 ttcattcacttcttatcttacttctatttttgtgtttaatctcatcatgagctaaaccactttttggttgagactttatgaagttataa--atgtttgca 16378639  T
Q  305 taagttt 311  Q
    | |||||    
T  16378638 tgagttt 16378632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 1879500 - 1879597
Alignment:
Q  212 catttcttctcttatttctatttt-gtgtttaagctcatcatgagctaaacccctttttggttaagacatgatgatgttatgattatgtttgcataag 308  Q
    |||||||| |||||||| |||||| |||||| |||| | ||||||||||| | |||| || ||||||||  |||| ||||||||||||||||||||||    
T  1879500 catttcttatcttatttatatttttgtgtttgagcttaccatgagctaaaacactttgtgcttaagacacaatgaggttatgattatgtttgcataag 1879597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 1903270 - 1903371
Alignment:
Q  206 ttcattcatttcttctcttatttctatttt-gtgtttaagctcatcatgagctaaacccctttttggttaagacatgatgatgttatgattatgtttgca 304  Q
    ||||| |||||||| |||||||| |||||| |||||| | || ||| |||||||||   || | ||||||||||||||||| ||||||||||||||||||    
T  1903270 ttcatccatttcttatcttatttatatttttgtgtttgatcttatcttgagctaaaatactgtgtggttaagacatgatgaggttatgattatgtttgca 1903369  T
Q  305 ta 306  Q
    ||    
T  1903370 ta 1903371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 2814607 - 2814690
Alignment:
Q  232 ttttgtgtttaagctcatcatgagctaaacccctttt-tggttaagacatgatgatgttatgattatgtttgcataagtttaga 314  Q
    ||||||| ||||||||||||| ||| ||||||||||  || || ||||||||||| ||||||||||| |||||||||| |||||    
T  2814607 ttttgtggttaagctcatcataagcgaaacccctttaatgatttagacatgatgacgttatgattatatttgcataagattaga 2814690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 18714511 - 18714458
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  18714511 cggggtttgaaccccggaccttgcatatattatgcattgtccttaccaactgag 18714458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 404
Target Start/End: Complemental strand, 10244797 - 10244737
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  10244797 gtggtggccgggtttgaaccccggaccttgcatatattatgcattgtccataccaactgag 10244737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 19599208 - 19599153
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||| | |||||||||||||||||||||||  |||||| ||||||    
T  19599208 cggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagtt 19599153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 27833390 - 27833452
Alignment:
Q  343 ggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||| ||||||||||||||| | |||| |||||||||||||||||| ||||||| ||||    
T  27833390 ggtggtggtcggggtttgaaccccggaccttacatatattatgcattgtccttaccaactgag 27833452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 27462434 - 27462487
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  27462434 cggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgag 27462487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 46987149 - 46987096
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  46987149 cggggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgag 46987096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 48007563 - 48007600
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  48007563 ccttgcatatattatgcattgtcattaccaactgagtt 48007600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 19416588 - 19416524
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||||||| | |||||||||| ||||||||||||  |||||| ||||    
T  19416588 ttggtggtggccggggtttgaaccccggaccttgcatattttatgcattgtccataccaactgag 19416524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 7872748 - 7872799
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||| ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  7872748 gggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgag 7872799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 20085758 - 20085797
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  20085758 ggggtttgaaccccggaccttgcatatattatgcattgtc 20085797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 23413048 - 23413099
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||| |||| |||||||||||||||||||||||  |||||| ||||||    
T  23413048 gtttgaactcccgaccttgcatatattatgcattgtccataccaactgagtt 23413099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 3671898 - 3671848
Alignment:
Q  341 ttggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    |||||||||| |||||||||||| || | ||||||||||||||||||||||    
T  3671898 ttggtggtggtcggggtttgaactccagaccttgcatatattatgcattgt 3671848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 5579765 - 5579703
Alignment:
Q  343 ggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||| ||||||||||||||| | |||||||||||||||||| ||||  |||||| ||||    
T  5579765 ggtggtggtcggggtttgaaccccagaccttgcatatattatgcactgtccctaccaactgag 5579703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 21322249 - 21322183
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||| |||||||||||||  | ||||||||| |||||||||| || ||||||| ||||||    
T  21322249 ttggtggtggccggggtttgaaccctggaccttgcatacattatgcattatccttaccaactgagtt 21322183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 25602979 - 25602941
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  25602979 ggggtttcaaccccgggccttgcatatattatgcattgt 25602941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 37230031 - 37230081
Alignment:
Q  356 tttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||||| | |||||||||||||||||||| || ||||||| ||||||    
T  37230031 tttgaaccccagaccttgcatatattatgcattttccttaccaactgagtt 37230081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 2476650 - 2476617
Alignment:
Q  233 tttgtgtttaagctcatcatgagctaaacccctt 266  Q
    |||||| |||||||||||||||||||||||||||    
T  2476650 tttgtggttaagctcatcatgagctaaacccctt 2476617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 2618734 - 2618689
Alignment:
Q  359 gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  2618734 gaaccccggaccttgcatatattatgcattgtccttaccaactgag 2618689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 37624598 - 37624553
Alignment:
Q  359 gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||| |||||||||||||||||||||||  |||||| ||||    
T  37624598 gaacccccgaccttgcatatattatgcattgtccataccaactgag 37624553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 39280820 - 39280869
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| | ||||||||||||||||||||||  ||||||| ||||    
T  39280820 gtttgaaccccggaccttgcatatattatgcattgttcttaccaactgag 39280869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 1780777 - 1780714
Alignment:
Q  233 tttgtgtttaagctcatcatgagctaaacccct--ttttggttaagacatgatgatgttatgat 294  Q
    |||||| |||| |||||||||| ||||||||||  || ||||| ||||||||||| ||||||||    
T  1780777 tttgtggttaatctcatcatgacctaaaccccttcttgtggtttagacatgatgaagttatgat 1780714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 3830139 - 3830091
Alignment:
Q  344 gtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||| |||||||||||||  | |||||||||||||||||||||||    
T  3830139 gtggtggctggggtttgaaccctggaccttgcatatattatgcattgtc 3830091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 4340171 - 4340127
Alignment:
Q  370 cttgcatatattatgcattgtcattaccaaatgagttcatctcac 414  Q
    |||||||||||||||||||||| ||||||| |||| | |||||||    
T  4340171 cttgcatatattatgcattgtccttaccaactgagctaatctcac 4340127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 5041398 - 5041362
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| | |||||||||||||||||||||||    
T  5041398 gtttgaaccccagaccttgcatatattatgcattgtc 5041362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 7670494 - 7670458
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgt 390  Q
    |||||||||||| | ||||||||||||||||||||||    
T  7670494 ggtttgaaccccggaccttgcatatattatgcattgt 7670458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 19626527 - 19626563
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| | |||||||||||||||||||||||    
T  19626527 gtttgaaccccggaccttgcatatattatgcattgtc 19626563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 31038509 - 31038573
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||||||| | ||||||||| | |||||||||||  |||||| ||||    
T  31038509 ttggtggtggccggggtttgaaccccagaccttgcatacaatatgcattgtccataccaactgag 31038573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 40867089 - 40867045
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtcattaccaa 399  Q
    ||||||||||| | ||||||||||| ||||||||||| |||||||    
T  40867089 gtttgaaccccggaccttgcatatactatgcattgtctttaccaa 40867045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 46737844 - 46737808
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| | |||||||||||||||||||||||    
T  46737844 gtttgaaccccggaccttgcatatattatgcattgtc 46737808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 48629063 - 48629103
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||| |||||| | |||||||||||||||||||||||    
T  48629063 cggggtttaaaccccggaccttgcatatattatgcattgtc 48629103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 41507964 - 41507800
Alignment:
Q  147 tggatcgtaatcttcctttgcaaactcaaaattcttctattgattattgcaactatgcattcattcatttcttctcttatttctattttgtgtttaagct 246  Q
    ||||| ||||| ||| |||| |||||  ||| ||||||||||||||||  || ||||  |||||||| ||||| ||||||||||||||| ||||||||||    
T  41507964 tggattgtaatattcttttgtaaactttaaactcttctattgattattataattatgttttcattcacttcttatcttatttctattttttgtttaagct 41507865  T
Q  247 catcatgagctaaacccctttttggttaagacatgatgatgttatgattatgtttgcataagttt 311  Q
    ||||||||||||| || |||  ||||||| ||||||||| ||| |||| |||||| | |||||||    
T  41507864 catcatgagctaacccgcttggtggttaatacatgatgaggttttgatcatgtttacgtaagttt 41507800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 52904131 - 52904194
Alignment:
Q  341 ttggtggtggcggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||    
T  52904131 ttggtggtggcggggtttgaacccccgacattgcatatattatgcattgtccttaccaactgag 52904194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 8676331 - 8676404
Alignment:
Q  232 ttttgtgtttaagctcatcatgagctaaacccctttt-tggttaagacatgatgatgttatgattatgtttgca 304  Q
    ||||||||||||   |||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||    
T  8676331 ttttgtgtttaataccatcatgagctaaaccacttttatggttgagacatgatgatgttatgaatatgtttgca 8676404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 38130946 - 38131012
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||  |||||| ||||||    
T  38130946 ttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagtt 38131012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 48849761 - 48849815
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||    
T  48849761 cggggtttgaaccccggaccttgcatatattatgcattgtca-taccaactgagtt 48849815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 25441498 - 25441551
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  25441498 cggggtttgaaccccagaccttgcatatattatgcattgtccataccaactgag 25441551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 25505689 - 25505754
Alignment:
Q  341 ttggtggtggcggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||| | ||||| ||||||| | ||||||||||||||||||||||| |||| || ||||||    
T  25505689 ttggtggtgtccgggttcgaaccccagaccttgcatatattatgcattgtccttacaaactgagtt 25505754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 21160122 - 21160078
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatgcatt 388  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||    
T  21160122 gtggtggtggggtttgaacccccgaccttacatatattatgcatt 21160078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 25340911 - 25340975
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||||||| | |||||||||| ||||||||||||  |||||| ||||    
T  25340911 ttggtggtggccggggtttgaaccccggaccttgcatattttatgcattgtccataccaactgag 25340975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 34899160 - 34899120
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  34899160 cggggtttgaaccccggaccttgcatatattatgcattgtc 34899120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 35191816 - 35191868
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||| ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  35191816 ggggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgag 35191868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 4601918 - 4601867
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| |||||||||||||| | |||||||| ||||||||||||||    
T  4601918 ttggtggtggccggggtttgaaccccggaccttgcatttattatgcattgtc 4601867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 7464489 - 7464544
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||| | |||| ||||||||||||||||||  |||||| ||||||    
T  7464489 cggggtttgaaccccggaccttacatatattatgcattgtccctaccaactgagtt 7464544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 10922306 - 10922361
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||| |  ||||||||||||||||||||||  |||||| ||||||    
T  10922306 cggggtttgaaccccggatcttgcatatattatgcattgtccctaccaactgagtt 10922361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 41817573 - 41817522
Alignment:
Q  341 ttggtggtggcg-gggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||||  ||||||||||||| | |||||||||||||||||||||||    
T  41817573 ttggtggtggctagggtttgaaccccggaccttgcatatattatgcattgtc 41817522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 45432009 - 45431958
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  45432009 gggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgag 45431958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 51250231 - 51250286
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||  | ||||||||||||||||| ||||||| ||||||| ||||||    
T  51250231 cggggtttgaacttcaggccttgcatatattatacattgtccttaccaactgagtt 51250286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 406
Target Start/End: Original strand, 21914070 - 21914124
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||| |||||||   ||||||||||||||||||||||| ||||||| ||||||    
T  21914070 ggggttcgaaccccataccttgcatatattatgcattgtccttaccaactgagtt 21914124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 25030620 - 25030570
Alignment:
Q  232 ttttgtgtttaagctcatcatgagctaaaccccttt-ttggttaagacatg 281  Q
    ||||||||||||| |||||||||| |||||||||||  |||||||||||||    
T  25030620 ttttgtgtttaagttcatcatgagataaacccctttagtggttaagacatg 25030570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 35863814 - 35863864
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| | |||||||||||||||| |||||| ||||||| ||||    
T  35863814 ggtttgaaccccagaccttgcatatattatgtattgtccttaccaactgag 35863864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 913587 - 913636
Alignment:
Q  341 ttggtggtggcgg-ggtttgaacccccggccttgcatatattatgcattg 389  Q
    ||||||||||| | |||||||||||| | |||||||||||||||||||||    
T  913587 ttggtggtggcagaggtttgaaccccggaccttgcatatattatgcattg 913636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 5349589 - 5349536
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||| | | |||||||||||| |||||||||| ||||||| ||||||    
T  5349589 gggtttgaacctcggaccttgcatatataatgcattgtccttaccaagtgagtt 5349536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 16663236 - 16663297
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagttcatctcac 414  Q
    ||||||||||||| | |||||||||||||||||||| ||  |||||| |||| | |||||||    
T  16663236 gggtttgaaccccggaccttgcatatattatgcattatccataccaactgagataatctcac 16663297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 21245853 - 21245808
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaa 399  Q
    |||||||||||| | |||| |||||||||||||||||| |||||||    
T  21245853 ggtttgaaccccagaccttacatatattatgcattgtccttaccaa 21245808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 25727956 - 25728005
Alignment:
Q  343 ggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||| |||| |||||||||| | |||||||||||||||||||||||    
T  25727956 ggtggtggtcgggatttgaaccccggaccttgcatatattatgcattgtc 25728005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 48315022 - 48315075
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||| |||||||||| | |||||||||||||||||||| || ||||||| ||||    
T  48315022 cgggatttgaaccccggaccttgcatatattatgcattatccttaccaactgag 48315075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 48656900 - 48656937
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||||| | |||||||||||||||||||||||    
T  48656900 ggtttgaaccccggaccttgcatatattatgcattgtc 48656937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 52119439 - 52119386
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| |||||||   ||||||||||||||||||||||| ||||||| ||||    
T  52119439 cggggttcgaaccccgaaccttgcatatattatgcattgtccttaccaactgag 52119386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 54230097 - 54230150
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| |||||||   ||||||||||||||||||||||| ||||||| ||||    
T  54230097 cggggttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgag 54230150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 1111839 - 1111879
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||||||||| ||||||    
T  1111839 cggggtttgaaccccagaccttgcatatattatgtattgtc 1111879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 8075848 - 8075808
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||| | | |||||||||||||||||||||||    
T  8075848 cggggtttgaacctcagaccttgcatatattatgcattgtc 8075808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 8127523 - 8127471
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||   |||||||||| |||||||||||| ||||||| ||||||    
T  8127523 ggtttgaaccccaaaccttgcatattttatgcattgtccttaccaactgagtt 8127471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 8238623 - 8238587
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| | |||||||||||||||||||||||    
T  8238623 gtttgaaccccagaccttgcatatattatgcattgtc 8238587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 10926527 - 10926479
Alignment:
Q  356 tttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||   ||||||||||||||||||||||| ||||||| ||||    
T  10926527 tttgaaccccgaaccttgcatatattatgcattgtccttaccaactgag 10926479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 16792972 - 16793012
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||  | |||||||||||||||||||||||    
T  16792972 cggggtttgaaccctggaccttgcatatattatgcattgtc 16793012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 17588406 - 17588370
Alignment:
Q  370 cttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  17588406 cttgcatatattatgcattgtccttaccaactgagtt 17588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 28266771 - 28266731
Alignment:
Q  359 gaacccccggccttgcatatattatgcattgtcattaccaa 399  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  28266771 gaaccccggaccttgcatatattatgcattgtccttaccaa 28266731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 29631260 - 29631196
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||| |||   |||||||||||||||||||||||  |||||| ||||    
T  29631260 ttggtggtggccggggtttgaatcccgaaccttgcatatattatgcattgtccataccaactgag 29631196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 32753887 - 32753851
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  32753887 gtttgaaccccgggccttgtatatattatgcattgtc 32753851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 32843260 - 32843300
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||| ||||||||||||    
T  32843260 cggggtttgaaccccagaccttgcatattttatgcattgtc 32843300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 43815560 - 43815524
Alignment:
Q  370 cttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  43815560 cttgcatatgttatgcattgtcattaccaactgagtt 43815524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 49975807 - 49975843
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| | |||||||||||||||||||||||    
T  49975807 gtttgaaccccagaccttgcatatattatgcattgtc 49975843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 29241601 - 29241521
Alignment:
Q  233 tttgtgtttaagctcatcatgagctaaacccctttttggttaagacatgatgatgttatgattatgtttgcataagtttag 313  Q
    ||||||||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  29241601 tttgtgtttaatctcatcatgaggtaaaaccctttgtggttaagacatgatgatgttatgataatgtttgcataagtttag 29241521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 37849664 - 37849599
Alignment:
Q  246 tcatcatgagctaaacccctttttggttaagacatgatgatgttatgattatgtttgcataagttt 311  Q
    ||||||||||||||||| |||| | |||||||| |||||| ||| ||||||| |||||||||||||    
T  37849664 tcatcatgagctaaaccactttatagttaagacgtgatgaggttctgattatatttgcataagttt 37849599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 3509928 - 3509992
Alignment:
Q  341 ttggtggtggcggggtttgaacccccgg-ccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| | |||||||||||||| |||||||||||||||||||||||  |||||| ||||    
T  3509928 ttggtggtggccgagtttgaacccccggaccttgcatatattatgcattgtccataccaactgag 3509992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 29800595 - 29800541
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||||||||||| |||||||||| ||||||||| || ||||||| ||||||    
T  29800595 ggggtttgaacccccgaccttgcatattttatgcattatccttaccaactgagtt 29800541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 8269366 - 8269419
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | |||||||||||||||| |||||| ||||||| ||||    
T  8269366 cggggtttgaaccccggaccttgcatatattatgtattgtccttaccaactgag 8269419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 17139504 - 17139568
Alignment:
Q  341 ttggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||| ||||||||||||||| | ||||| |||||||||||||||||  |||||| ||||    
T  17139504 ttggtggtggtcggggtttgaaccccggaccttgaatatattatgcattgtccctaccaactgag 17139568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 25533036 - 25532996
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  25533036 cggggtttgaaccccggaccttgcatatattatgcattgtc 25532996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 34521177 - 34521241
Alignment:
Q  341 ttggtggtggcgg-ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| | |||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  34521177 ttggtggtggccgaggtttgaaccccggaccttgcatatattatgcattgtccataccaactgag 34521241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 42045359 - 42045423
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| ||||||||||| || | |||||||||||||||||||||||  |||||| ||||    
T  42045359 ttggtggtggccggggtttgaactccagaccttgcatatattatgcattgtccataccaactgag 42045423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 45481548 - 45481504
Alignment:
Q  359 gaacccccggccttgcatatattatgcattgtcattaccaaatga 403  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||    
T  45481548 gaaccccggaccttgcatatattatgcattgtccttaccaaatga 45481504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 52592418 - 52592478
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||| |||||||| ||||| |||||||||||||||  |||||| ||||||| ||||    
T  52592418 gtggtggcgtggtttgaatccccgaccttgcatatattatatattgtccttaccaattgag 52592478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 6000141 - 6000196
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||| | | ||||||||||||||||||||||| | ||||| ||||||    
T  6000141 cggggtttgaacctcggaccttgcatatattatgcattgtcctaaccaactgagtt 6000196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 388
Target Start/End: Original strand, 10356702 - 10356749
Alignment:
Q  341 ttggtggtggcggggtttgaacccccggccttgcatatattatgcatt 388  Q
    ||||||||||  ||||||||||||| | ||||||||||||||||||||    
T  10356702 ttggtggtggtcgggtttgaaccccagaccttgcatatattatgcatt 10356749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 11681286 - 11681247
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  11681286 cggggtttgaaccccagaccttgcatatattatgcattgt 11681247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 12212358 - 12212303
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||| | | |||||||||||||||||| ||  |||||||||||||    
T  12212358 cggggtttgaaccccggacgttgcatatattatgcattatccctaccaaatgagtt 12212303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 390
Target Start/End: Original strand, 12268982 - 12269021
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  12268982 cggggtttgaaccccggaccttgcatatattatgcattgt 12269021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 19709419 - 19709474
Alignment:
Q  240 ttaagctcatcatgagctaaacccct-ttttggttaagacatgatgatgttatgat 294  Q
    |||||||||||||||||||||||| | || ||||| ||||||||||| ||||||||    
T  19709419 ttaagctcatcatgagctaaacccttcttgtggtttagacatgatgaggttatgat 19709474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 27533317 - 27533266
Alignment:
Q  341 ttggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||| |||||||||||||||   |||||||||||||||||||||||    
T  27533317 ttggtggtggtcggggtttgaaccccgaaccttgcatatattatgcattgtc 27533266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 391
Target Start/End: Complemental strand, 44641585 - 44641550
Alignment:
Q  356 tttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||| |||||||||||||||||||||||||    
T  44641585 tttgaaccccgggccttgcatatattatgcattgtc 44641550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 3481633 - 3481587
Alignment:
Q  343 ggtggtggc-ggggtttgaacccccggccttgcatatattatgcatt 388  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||||    
T  3481633 ggtggtggccggggtttgaaccccagaccttgcatatattatgcatt 3481587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 4856613 - 4856547
Alignment:
Q  240 ttaagctcatcatgagctaaacccctttt-tggttaagacatgatgatgttatgattatgtttgcat 305  Q
    ||||||||| || ||| |||||||||||| | ||| ||| ||||||||||||||||||| |||||||    
T  4856613 ttaagctcaacacgagttaaaccccttttgttgtttagatatgatgatgttatgattatttttgcat 4856547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 29251827 - 29251777
Alignment:
Q  341 ttggtggtggcggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| ||||| ||||| | | |||||||||||||||||||||||    
T  29251827 ttggtggtggccgggttcgaacctcagaccttgcatatattatgcattgtc 29251777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 29739397 - 29739347
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| | |||||||||| |||||||||||| ||||||| ||||    
T  29739397 ggtttgaaccccggaccttgcatattttatgcattgtccttaccaactgag 29739347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 1972310 - 1972374
Alignment:
Q  232 ttttgtgtttaagctcatcatgagctaaacccctttt--tggttaagacatgatgatgttatgat 294  Q
    ||||||| |||||||||||||||||||| ||||||||  | ||| ||||||||| | ||||||||    
T  1972310 ttttgtggttaagctcatcatgagctaagccccttttaatagtttagacatgataaggttatgat 1972374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 5907862 - 5907809
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||  | ||||||||||||||||||||||| || |||| ||||    
T  5907862 cggggtttgaaccctggaccttgcatatattatgcattgtccttgccaactgag 5907809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 9639833 - 9639870
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  9639833 ccttgcatatattatgcattgtccttaccaagtgagtt 9639870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 10132445 - 10132490
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaa 399  Q
    |||| ||||||| | ||||||||||||||||||||||| |||||||    
T  10132445 ggttcgaaccccagaccttgcatatattatgcattgtccttaccaa 10132490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 18166665 - 18166612
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | | |||||||||||||||||||||  |||||| ||||    
T  18166665 cggggtttgaaccccggactttgcatatattatgcattgtctataccaactgag 18166612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 28039876 - 28039913
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  28039876 ccttgcatatattatgcattgtccttaccaactgagtt 28039913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 38448872 - 38448917
Alignment:
Q  359 gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  38448872 gaaccccggaccttgcatatattatgcattgtccttaccaactgag 38448917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 39303008 - 39302955
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||| ||| |||||||||| ||||| |||||| ||||||| ||||    
T  39303008 cggggtttgaaccaccgaccttgcatattttatgtattgtccttaccaactgag 39302955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 49875615 - 49875652
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  49875615 ccttgcatatattatgcattgtccttaccaactgagtt 49875652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 50638902 - 50638967
Alignment:
Q  340 gttggtggtggcggggttt-gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| ||| || ||||||  | ||||||||||||||||||||||| ||||||| ||||    
T  50638902 gttggtggtggccgggattcgaaccctggaccttgcatatattatgcattgtccttaccaactgag 50638967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 50849089 - 50849126
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  50849089 ccttacatatattatgcattgtcattaccaactgagtt 50849126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 2994821 - 2994781
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | ||||||||||||||| |||||||    
T  2994821 cggggtttgaaccccggaccttgcatatattatacattgtc 2994781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 8736498 - 8736458
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||| ||||||||||||    
T  8736498 cggggtttgaaccccggaccttgcatattttatgcattgtc 8736458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 16033452 - 16033488
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| | |||||||||||||||||||||||    
T  16033452 gtttgaaccccagaccttgcatatattatgcattgtc 16033488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 16307712 - 16307672
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||| |||| | |||||||||||||||||||||||    
T  16307712 cggggtttgatccccagaccttgcatatattatgcattgtc 16307672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 19620634 - 19620586
Alignment:
Q  356 tttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||| | |||||||||||||||| |||||| ||||||| ||||    
T  19620634 tttgaaccccggaccttgcatatattatgtattgtccttaccaactgag 19620586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 22335421 - 22335381
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||| | | |||||||||||||||||||||||    
T  22335421 cggggtttgaacctcagaccttgcatatattatgcattgtc 22335381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 26803450 - 26803502
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||||| | | |||||||||||||||||||||  |||||| ||||    
T  26803450 ggggtttgaaccccggactttgcatatattatgcattgtccataccaactgag 26803502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 33020033 - 33020081
Alignment:
Q  344 gtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||| |||||||||||| | | |||||||||||||||||||||||    
T  33020033 gtggtggctggggtttgaacctcagaccttgcatatattatgcattgtc 33020081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 41362689 - 41362641
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatgcattgtca 392  Q
    ||||||||  |||| ||||| ||| ||||||||||||||||||||||||    
T  41362689 gtggtggcatggttcgaacctccgaccttgcatatattatgcattgtca 41362641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 41973318 - 41973278
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||| ||||||| | |||||||||||||||||||||||    
T  41973318 cggggttcgaaccccggaccttgcatatattatgcattgtc 41973278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 42888649 - 42888585
Alignment:
Q  341 ttggtggtggcggggttt-gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| || ||||||| | |||||||||| ||||||||||||  |||||| ||||    
T  42888649 ttggtggtggcgggggttcgaaccccggaccttgcatattttatgcattgtccataccaactgag 42888585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 46707931 - 46707887
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtcattaccaa 399  Q
    ||||||||||| |  |||||||||||||||||||||| |||||||    
T  46707931 gtttgaaccccggaacttgcatatattatgcattgtccttaccaa 46707887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 9848 - 9708
Alignment:
Q  179 tcttctattgattattgcaactatgcattcattcatttcttctcttatttctattttgtgtttaagctcatcatgagctaaacccctttttggttaagac 278  Q
    ||||||||| |||||||||| ||    ||||||||||||||| | | || | ||||||| |||||| |||||||||||||||||| ||  | ||||||||    
T  9848 tcttctattaattattgcaattacattttcattcatttcttcccattttccaattttgtatttaagatcatcatgagctaaaccctttcgtcgttaagac 9749  T
Q  279 atgatgatgttatgattatgtttgcataagtttagattgtt 319  Q
    |||||||   |||||||||||||| | |||||||| |||||    
T  9748 atgatgagactatgattatgtttgtacaagtttagtttgtt 9708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 147 - 311
Target Start/End: Original strand, 29890570 - 29890737
Alignment:
Q  147 tggatcgtaatcttcctttgcaaactcaaaattcttctattgattattgcaactatgcattcattcatttcttctcttatttct-attttgtgtttaagc 245  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||  ||||||| |  ||||  ||||||||||| || |  ||||| |  ||||| ||||||||    
T  29890570 tggattgtaatattcctatgcaaactctaaattcttctatcaattattgtagttatgttttcattcattttttataatatttttgtttttgcgtttaagc 29890669  T
Q  246 tcatcatgagctaaacc-cctttttggttaagacatgatgatgttatgattatgttt-gcataagttt 311  Q
    || ||||||||||||||  |||| | ||||| ||||||||| ||||||||||||||| ||||||||||    
T  29890670 tcgtcatgagctaaacctactttgtcgttaatacatgatgaggttatgattatgtttggcataagttt 29890737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 8569772 - 8569717
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||| | |||||||||||||||||||||||  |||||| ||||||    
T  8569772 cggggtttgaaccccggaccttgcatatattatgcattgtccataccaattgagtt 8569717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 24373700 - 24373763
Alignment:
Q  344 gtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||| |||||||||||||| | |||||||||||||||||||||||  |||||| ||||||    
T  24373700 gtggtggctggggtttgaacccctgaccttgcatatattatgcattgtctctaccaattgagtt 24373763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 20744201 - 20744148
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  20744201 cggggtttgaaccccagaccttgcatatattatgcattgtccataccaactgag 20744148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 31971590 - 31971537
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||| | | ||||||||||||||||||||||| ||||||| ||||||    
T  31971590 gggtttgaacctcggaccttgcatatattatgcattgtccttaccaactgagtt 31971537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 7082979 - 7083043
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| ||||||||||| || |  |||||||||||||||||||||| ||||||| ||||    
T  7082979 ttggtggtggctggggtttgaactccagatcttgcatatattatgcattgtccttaccaattgag 7083043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 2726415 - 2726470
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||| ||||||| | |||||||||||||||||||||||  |||||| ||||||    
T  2726415 cggggttcgaaccccggaccttgcatatattatgcattgtccataccaactgagtt 2726470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 17151310 - 17151251
Alignment:
Q  341 ttggtggtggcgg-ggtttgaacccccggccttgcatatattatgcattgtcattaccaa 399  Q
    ||||||||||| | |||||||||||| | |||||||||||||||| ||||||| ||||||    
T  17151310 ttggtggtggccgaggtttgaaccccagaccttgcatatattatgtattgtcactaccaa 17151251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 23629853 - 23629888
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||||||||||||||||||| ||||    
T  23629853 ccttgcatatattatgcattgtcattaccaattgag 23629888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 8831277 - 8831215
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||| | | ||||||||| | ||||||||| ||||||||||||| ||||||| ||||||    
T  8831277 gtggtggccgaggttgaaccccggaccttgcataaattatgcattgtccttaccaactgagtt 8831215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 33824941 - 33824891
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| | ||||||||||||||||||||||| ||| ||| ||||    
T  33824941 ggtttgaaccccggaccttgcatatattatgcattgtccttatcaactgag 33824891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 655747 - 655800
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| ||||||| | |||||||||||||||||||||||  |||||| ||||    
T  655747 cggggttcgaaccccggaccttgcatatattatgcattgtcgataccaactgag 655800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 788929 - 788876
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| ||   ||||||||||||||||||||||| ||||||| ||||    
T  788929 cggggtttgaactccgaaccttgcatatattatgcattgtccttaccaactgag 788876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 4455594 - 4455647
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | ||||||||||||||||| |||||  |||||| ||||    
T  4455594 cggggtttgaaccccagaccttgcatatattatgccttgtccataccaactgag 4455647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 9977118 - 9977065
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||| | |||||||||||||||||||| ||  |||||| ||||||    
T  9977118 gggtttgaaccccagaccttgcatatattatgcattatccataccaattgagtt 9977065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 13560898 - 13560853
Alignment:
Q  269 tggttaagacatgatgatgttatgattatgtttgcataagtttaga 314  Q
    ||||||||| |||||||| ||||||| ||||||| |||||||||||    
T  13560898 tggttaagatatgatgatattatgatcatgtttggataagtttaga 13560853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 14918298 - 14918351
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | ||||| |||||||||||||||||  |||||| ||||    
T  14918298 cggggtttgaaccccagaccttgtatatattatgcattgtccctaccaactgag 14918351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 29740545 - 29740492
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | |||||| ||||||||||||||||  |||||| ||||    
T  29740545 cggggtttgaaccccggaccttgcgtatattatgcattgtccataccaattgag 29740492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 8629697 - 8629749
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||   |||||||||||||||||||||||  |||||| ||||||    
T  8629697 ggtttgaaccccgaaccttgcatatattatgcattgtccataccaattgagtt 8629749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 15155795 - 15155759
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgt 390  Q
    |||||||||||| | ||||||||||||||||||||||    
T  15155795 ggtttgaaccccagaccttgcatatattatgcattgt 15155759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 18254092 - 18254152
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||| ||||||| ||| ||| | |||||||| |||||||||||||| ||||||| ||||    
T  18254092 gtggtgtcggggttcgaatcccggaccttgcatgtattatgcattgtccttaccaactgag 18254152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 388
Target Start/End: Original strand, 27907938 - 27907986
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcatt 388  Q
    ||||||||||| |||||||||||||| | |||||||||| |||||||||    
T  27907938 ttggtggtggccggggtttgaaccccagaccttgcatattttatgcatt 27907986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 28898919 - 28898871
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaa 399  Q
    |||||||||||| || | |||| |||||||||||||||||| |||||||    
T  28898919 cggggtttgaactccggacctttcatatattatgcattgtccttaccaa 28898871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 33976307 - 33976267
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||| ||||||||||||    
T  33976307 cggggtttgaaccccggaccttgcatattttatgcattgtc 33976267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 33650673 - 33650593
Alignment:
Q  232 ttttgtgtttaagctcatcatgagctaaaccccttt-ttggttaagacatgatgatgttatgattatgtttgcataagttt 311  Q
    ||||||| ||| ||||||||||||||||||||||||  ||||| |||||||| || |||||| ||||||||||||||||||    
T  33650673 ttttgtggttatgctcatcatgagctaaacccctttagtggttgagacatgacgaggttatggttatgtttgcataagttt 33650593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 27587295 - 27587231
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||||||| | |||||||||||| |||||||||| ||||||| ||||    
T  27587295 ttggtggtggccggggtttgaaccccggaccttgcatatatcatgcattgtccttaccaactgag 27587231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 7869639 - 7869694
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||  ||||||||||||||||||||||| | ||||| ||||||    
T  7869639 cggggtttgaacccccaaccttgcatatattatgcattgtcctcaccaactgagtt 7869694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 12748975 - 12748924
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||    
T  12748975 ttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgtc 12748924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 32051519 - 32051570
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||    
T  32051519 ttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgtc 32051570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 444476 - 444423
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||| |||||| | ||||||||||||||||||||||| ||||||| ||||    
T  444476 cggggtttaaaccccggaccttgcatatattatgcattgtccttaccaattgag 444423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 30623356 - 30623303
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  30623356 cggggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgag 30623303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 13105154 - 13105094
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagttcatctcac 414  Q
    |||| ||||||| | |||||||||||||||||||||||  |||||| |||||| |||||||    
T  13105154 ggttcgaaccccggcccttgcatatattatgcattgtccctaccaactgagttaatctcac 13105094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 24838157 - 24838221
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||||||| | |||||||||| |||||||||||| | ||||| ||||    
T  24838157 ttggtggtggccggggtttgaaccccggaccttgcatattttatgcattgtcctaaccaactgag 24838221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 36428685 - 36428725
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatg 384  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  36428685 gtggtggcggggtttgaacccctgaccttgcatatattatg 36428725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 12800887 - 12800938
Alignment:
Q  341 ttggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||| ||||||||||||||| | |||||||||||||||| ||||||    
T  12800887 ttggtggtggtcggggtttgaaccccggaccttgcatatattatgtattgtc 12800938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 39821945 - 39821894
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  39821945 gggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgag 39821894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 42525919 - 42526002
Alignment:
Q  232 ttttgtgtttaagctcatcatgagctaaacccctttt-tggttaagacatgatgatgttatgattatgtttgcataagtttaga 314  Q
    ||||||| |||| |||||||||||||||||  ||||  | ||| ||||||||||| ||||||||||| |||| ||||| |||||    
T  42525919 ttttgtggttaaactcatcatgagctaaacttctttaattgtttagacatgatgaggttatgattatatttgtataagattaga 42526002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 8704507 - 8704557
Alignment:
Q  341 ttggtggtggcggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||||| ||||||||  |||| |||||||||| |||||||    
T  8704507 ttggtggtggcggggttagaacccccaaccttacatatattatacattgtc 8704557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 19260566 - 19260616
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    ||||||||||| |||||||||||||| | |||| |||||||||||||||||    
T  19260566 ttggtggtggccggggtttgaaccccggaccttacatatattatgcattgt 19260616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 33105453 - 33105415
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  33105453 ggggtttgaaccccggaccttgcatatattatgcattgt 33105415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 42208470 - 42208520
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||| | | ||||||||||||||||||||||| ||||||| ||||    
T  42208470 ggtttgaacctcggaccttgcatatattatgcattgtccttaccaactgag 42208520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 1244703 - 1244756
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| ||||||| | ||||| ||||||||||||||||| ||||||| ||||    
T  1244703 cggggttcgaaccccagaccttgtatatattatgcattgtccttaccaactgag 1244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 7997003 - 7996950
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | ||||||||||||||||| |||||  |||||| ||||    
T  7997003 cggggtttgaaccccagaccttgcatatattatgcgttgtccataccaactgag 7996950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 8442503 - 8442540
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  8442503 ccttgcatatattatgcattgtccttaccaactgagtt 8442540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 18533731 - 18533678
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagt 405  Q
    |||||||||||||| |  |||||||||||||||||||||  ||||||| |||||    
T  18533731 ggggtttgaaccccggatcttgcatatattatgcattgttcttaccaactgagt 18533678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 19163534 - 19163587
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | ||||||||| |||||||||||||  |||||| ||||    
T  19163534 cggggtttgaaccccggaccttgcataaattatgcattgtccataccaactgag 19163587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 19452523 - 19452490
Alignment:
Q  233 tttgtgtttaagctcatcatgagctaaacccctt 266  Q
    |||||| |||||||||||||||||||||||||||    
T  19452523 tttgtggttaagctcatcatgagctaaacccctt 19452490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 19528553 - 19528586
Alignment:
Q  233 tttgtgtttaagctcatcatgagctaaacccctt 266  Q
    |||||| |||||||||||||||||||||||||||    
T  19528553 tttgtggttaagctcatcatgagctaaacccctt 19528586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 19778120 - 19778075
Alignment:
Q  359 gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  19778120 gaaccccggaccttgcatatattatgcattgtccttaccaactgag 19778075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 32421638 - 32421577
Alignment:
Q  345 tggtggcggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||| ||||||||||||| | |||||||||||||||  ||||||  |||||| ||||||    
T  32421638 tggtggccgggtttgaaccccggaccttgcatatattatatattgtccataccaactgagtt 32421577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 8881338 - 8881298
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||  | |||||||||||||||||||||||    
T  8881338 cggggtttgaaccctggaccttgcatatattatgcattgtc 8881298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 15438507 - 15438463
Alignment:
Q  360 aacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||| | ||||||||||||||||||||||| ||||||| ||||    
T  15438507 aaccccggaccttgcatatattatgcattgtccttaccaagtgag 15438463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 15529811 - 15529767
Alignment:
Q  360 aacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||| | ||||||||||||||||||||||| ||||||| ||||    
T  15529811 aaccccggaccttgcatatattatgcattgtccttaccaagtgag 15529767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 392
Target Start/End: Original strand, 27426673 - 27426725
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtca 392  Q
    ||||||||||| ||||||||||| |||| ||||| |||| |||||||||||||    
T  27426673 ttggtggtggccggggtttgaactcccgaccttgtatattttatgcattgtca 27426725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 30176417 - 30176453
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcat 387  Q
    ||||||||||||||| | |||||||||||||||||||    
T  30176417 cggggtttgaaccccggaccttgcatatattatgcat 30176453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 1753345 - 1753398
Alignment:
Q  346 ggtggcggggtttgaacccccggccttgcatatattatgcattgtcattaccaa 399  Q
    |||||||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  1753345 ggtggcggggtttgaacccccgaccttgcatatgttatgcattgtccttaccaa 1753398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 40901128 - 40901182
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatgcattgtcattacca 398  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||    
T  40901128 gtggtggcggagtttgaactcccgaccttgcatatattatgcattgtccttacca 40901182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 312
Target Start/End: Original strand, 13817341 - 13817448
Alignment:
Q  206 ttcattcatttcttctcttatttctattttgtgtttaagctcatcatgagctaaacccctttt-tggttaagacatgatgatgttatgattatgtttgca 304  Q
    |||||||||  |||||||  ||| |||||| |||| ||| || |||||||||||| || |||  ||| ||||||||||||||||||||  ||||||||||    
T  13817341 ttcattcatcacttctctattttatattttttgttgaagttcgtcatgagctaaatccttttagtggctaagacatgatgatgttatgtctatgtttgca 13817440  T
Q  305 taagttta 312  Q
    ||| ||||    
T  13817441 taaattta 13817448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 22630358 - 22630421
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagttcatctcac 414  Q
    ||||||||||||| | | |||||||||||||||||||||||| |||||| |||| | |||||||    
T  22630358 cggggtttgaacctcagaccttgcatatattatgcattgtcactaccaactgagataatctcac 22630421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 7230340 - 7230290
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  7230340 ggtttgaaccccggaccttgcatatattatgcattgtccttaccaactgag 7230290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 43034329 - 43034395
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||| |||||||||||| | | |||||||||||||||||||||||  |||||| ||||||    
T  43034329 ttggtggtggccggggtttgaacctcagaccttgcatatattatgcattgtccataccaactgagtt 43034395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 43782306 - 43782356
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||| | | ||||||||||||||||||||||||||||||| ||||    
T  43782306 ggtttgaaccgcagaccttgcatatattatgcattgtcattaccaactgag 43782356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 8027395 - 8027448
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||||||||  ||||||||||||||||||| || ||||||| ||||    
T  8027395 cggggtttgaacccccgatcttgcatatattatgcattatccttaccaactgag 8027448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 11949761 - 11949814
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  11949761 cggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgag 11949814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 56551590 - 56551643
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||| | | ||||||||||||||||||||||| ||||||| ||||    
T  56551590 cggggtttgaacctcggaccttgcatatattatgcattgtccttaccaactgag 56551643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 4225508 - 4225563
Alignment:
Q  241 taagctcatcatgagctaaacccctttttg--gttaagacatgatgatgttatgat 294  Q
    |||||||||||||||||||||||||| |||  ||| ||||||||||| ||||||||    
T  4225508 taagctcatcatgagctaaaccccttcttgtagtttagacatgatgaggttatgat 4225563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 9946501 - 9946437
Alignment:
Q  341 ttggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||| ||||||||||||||| | |||||||||| ||||||||||||  |||||| ||||    
T  9946501 ttggtggtggtcggggtttgaaccccggaccttgcatattttatgcattgtccataccaactgag 9946437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 10006395 - 10006351
Alignment:
Q  359 gaacccccggccttgcatatattatgcattgtcattaccaaatga 403  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||    
T  10006395 gaaccccagaccttgcatatattatgcattgtctttaccaaatga 10006351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 20383550 - 20383498
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  20383550 ggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgag 20383498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 28435235 - 28435299
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| ||||||||||||||   |||||||||||||||||||||||  |||||| ||||    
T  28435235 ttggtggtggctggggtttgaaccccgaaccttgcatatattatgcattgtccataccaactgag 28435299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 29908116 - 29908064
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||| || | ||||||||||||||||||||||| ||||||| ||||||    
T  29908116 ggtttgaactccggaccttgcatatattatgcattgtccttaccaactgagtt 29908064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 49041979 - 49042019
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  49041979 cggggtttgaaccccggaccttgcatatattatgcattgtc 49042019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 56497595 - 56497659
Alignment:
Q  341 ttggtggtggcggggttt-gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| ||| || ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  56497595 ttggtggtggccgggattcgaaccccagaccttgcatatattatgcattgtccttaccaattgag 56497659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 352 - 391
Target Start/End: Complemental strand, 675980 - 675941
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  675980 ggggtttgaaccccggaccttgcatatattatgcattgtc 675941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 391
Target Start/End: Complemental strand, 16737129 - 16737094
Alignment:
Q  356 tttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||||| |||||||||||||||||||||||    
T  16737129 tttgaacccccgaccttgcatatattatgcattgtc 16737094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 17423179 - 17423230
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||| | |||||||||||||||||||||||  |||||| ||||||    
T  17423179 gtttgaaccccggaccttgcatatattatgcattgtctctaccaactgagtt 17423230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 390
Target Start/End: Original strand, 19479475 - 19479514
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  19479475 cggggtttgaaccccggaccttgcatatattatgcattgt 19479514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 19908755 - 19908700
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||| ||||| | | ||||||||||||||||||||||| ||||||| ||||||    
T  19908755 cggggttcgaacctcggaccttgcatatattatgcattgtccttaccaactgagtt 19908700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 20799394 - 20799445
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  20799394 gggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgag 20799445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 21318251 - 21318306
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||  | |||||||||||||||||||||||  |||||| ||||||    
T  21318251 cggggtttgaaccctagaccttgcatatattatgcattgtccctaccaactgagtt 21318306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 21639510 - 21639435
Alignment:
Q  232 ttttgtgtttaagctcatcatgagctaaacccctttt-tggttaagacatgatgatgttatgattatgtttgcata 306  Q
    ||||||| || |||||||||| ||||||| | ||||  ||||| ||||||||||| ||||||||||| ||||||||    
T  21639510 ttttgtggttgagctcatcataagctaaatctctttagtggtttagacatgatgaggttatgattatatttgcata 21639435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 388
Target Start/End: Complemental strand, 44816006 - 44815967
Alignment:
Q  349 ggcggggtttgaacccccggccttgcatatattatgcatt 388  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  44816006 ggcggggtttgaaccccggaccttgcatatattatgcatt 44815967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 49473707 - 49473660
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaa 399  Q
    |||||| ||||||| | ||||||||||||||||||||||| |||||||    
T  49473707 ggggttcgaaccccggaccttgcatatattatgcattgtccttaccaa 49473660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 391
Target Start/End: Complemental strand, 55061095 - 55061060
Alignment:
Q  356 tttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||||| |||||||||||||||||||||||    
T  55061095 tttgaacccccgaccttgcatatattatgcattgtc 55061060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 21317339 - 21317389
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  21317339 ggtttgaacccctgaccttgcatatattatgcattgtctctaccaactgag 21317389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 54857602 - 54857652
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    ||||||||||| |||||||||||||| | |||||||||| |||||||||||    
T  54857602 ttggtggtggccggggtttgaaccccggaccttgcatattttatgcattgt 54857652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 14577505 - 14577558
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| || | | ||||||||||||||||||||| ||||||| ||||    
T  14577505 cggggtttgaactccggactttgcatatattatgcattgtccttaccaactgag 14577558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 16431679 - 16431626
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | |||||||||| ||||||||||||  |||||| ||||    
T  16431679 cggggtttgaaccccagaccttgcatattttatgcattgtccataccaactgag 16431626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 21449886 - 21449935
Alignment:
Q  341 ttggtggtggcggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    ||||||||||| ||||||||||||  | |||||||||||| |||||||||    
T  21449886 ttggtggtggccgggtttgaaccctggaccttgcatatatcatgcattgt 21449935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 24488467 - 24488430
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  24488467 ccttgtatatattatgcattgtcattaccaactgagtt 24488430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 24785460 - 24785513
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| ||||||| | ||||| ||||||||||||||||| ||||||| ||||    
T  24785460 cggggttcgaaccccagaccttgtatatattatgcattgtccttaccaactgag 24785513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 24822806 - 24822753
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| ||||||| | ||||| ||||||||||||||||| ||||||| ||||    
T  24822806 cggggttcgaaccccagaccttgtatatattatgcattgtccttaccaactgag 24822753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 37921809 - 37921764
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattac 396  Q
    ||||||||||| ||| | ||||||||||||||||||||||| ||||    
T  37921809 cggggtttgaatcccggaccttgcatatattatgcattgtccttac 37921764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 43722826 - 43722773
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||| | |||| ||||||||||||||||||  |||||| ||||||    
T  43722826 gggtttgaaccccggaccttacatatattatgcattgtccataccaactgagtt 43722773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 45029621 - 45029658
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  45029621 ccttacatatattatgcattgtccttaccaaatgagtt 45029658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 46676504 - 46676549
Alignment:
Q  359 gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  46676504 gaaccccggaccttgcatatattatgcattgtccttaccaactgag 46676549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 54294420 - 54294457
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcatt 388  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  54294420 cggggtttgaaccccggaccttgcatatattatgcatt 54294457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 56204992 - 56204955
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  56204992 ccttgcatatattatgcattgtccttaccaactgagtt 56204955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 388
Target Start/End: Complemental strand, 6087809 - 6087773
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcatt 388  Q
    |||||||||||||| | ||||||||||||||||||||    
T  6087809 ggggtttgaaccccagaccttgcatatattatgcatt 6087773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 11198391 - 11198351
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  11198391 cggggtttgaaccccggaccttgcatatattatgccttgtc 11198351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 21114303 - 21114343
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||||| ||||||||||    
T  21114303 cggggtttgaaccccggaccttgcatatatcatgcattgtc 21114343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 25783451 - 25783487
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| | |||||||||||||||||||||||    
T  25783451 gtttgaaccccggaccttgcatatattatgcattgtc 25783487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 38375020 - 38374980
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||||| || | |||||||||||||||||||||||    
T  38375020 cggggtttgaactccagaccttgcatatattatgcattgtc 38374980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 47806254 - 47806294
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||| ||||||| | |||||||||||||||||||||||    
T  47806254 cggggttcgaaccccagaccttgcatatattatgcattgtc 47806294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 49953405 - 49953441
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| | |||||||||||||||||||||||    
T  49953405 gtttgaaccccggaccttgcatatattatgcattgtc 49953441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 6489081 - 6489017
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  6489081 ttggtggtggccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgag 6489017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 19518601 - 19518637
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgt 390  Q
    |||||||||||||||||||||||||||||||||||||    
T  19518601 ggtttgaacccccggccttgcatatattatgcattgt 19518637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 34436925 - 34436861
Alignment:
Q  341 ttggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||||||||  |||||| ||||    
T  34436925 ttggtggtgggcggggtttgaaccccggcccttgcatatattatgcattgtccctaccaactgag 34436861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 12190062 - 12190015
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  12190062 gtggtggcggggtttgaacccccgaccttacatatattatgtattgtc 12190015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 22522788 - 22522839
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||    
T  22522788 ttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgtc 22522839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 11720967 - 11720902
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||  |||||| ||||||    
T  11720967 ttggtggtggccggggtttgaacccc-gaccttgcatatattatgcattgtccctaccaactgagtt 11720902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 4009941 - 4009876
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatatt-atgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||||||||||| | ||||||||||||| |||||||||| ||||||| ||||    
T  4009941 ttggtggtggccggggtttgaaccccggcccttgcatatattaatgcattgtccttaccaactgag 4009876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 5846092 - 5846039
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| | | ||||||||||||||||||||| ||||||| ||||    
T  5846092 cggggtttgaaccccagactttgcatatattatgcattgtccttaccaactgag 5846039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 3445234 - 3445298
Alignment:
Q  341 ttggtggtggcgggg-tttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| ||| |||||||||| | ||||||||| ||||||||||||| ||||||| ||||    
T  3445234 ttggtggtggccgggatttgaaccccggaccttgcatacattatgcattgtccttaccaactgag 3445298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 4763187 - 4763239
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||||||| | |||| |||||||||||||||||| ||||||| ||||||    
T  4763187 ggtttgaaccccggaccttacatatattatgcattgtctttaccaattgagtt 4763239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 5614835 - 5614791
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatgcatt 388  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||    
T  5614835 gtggtggtggggtttgaacccccgaccttacatatattatgcatt 5614791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 15889485 - 15889421
Alignment:
Q  341 ttggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||| ||||||||||||||  | |||||||||||||||||||||||  |||||| ||||    
T  15889485 ttggtggtggtcggggtttgaaccctagaccttgcatatattatgcattgtccctaccaactgag 15889421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 21139139 - 21139183
Alignment:
Q  344 gtggtggcggggtttgaacccccggccttgcatatattatgcatt 388  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||    
T  21139139 gtggtggcgggttttgaaccccggaccttgcatatattatgcatt 21139183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 40715947 - 40715987
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  40715947 cggggtttgaaccccggaccttgcatatattatgcattgtc 40715987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 6624850 - 6624799
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| |||||| ||||||| | |||||||||||||||||||||||    
T  6624850 ttggtggtggccggggttcgaaccccggaccttgcatatattatgcattgtc 6624799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 20721113 - 20721058
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||| | |||||||||||||||| ||||||  |||||| ||||||    
T  20721113 cggggtttgaaccccggaccttgcatatattatgtattgtccataccaactgagtt 20721058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 31877990 - 31877936
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||||||||| |  ||||||||||||||||||||||  |||||| ||||||    
T  31877990 ggggtttgaacccctgatcttgcatatattatgcattgtccataccaagtgagtt 31877936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 8882399 - 8882452
Alignment:
Q  353 gggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||| | |||| ||||||||||||| |||||||| ||| ||||||    
T  8882399 gggtttgaaccccggaccttacatatattatgcactgtcattatcaactgagtt 8882452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 11647242 - 11647205
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  11647242 ccttgcatatattatgcattgtccttaccaactgagtt 11647205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 16133063 - 16133116
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||| |||| | | ||||||||||||||||||||||| ||||||| ||||    
T  16133063 cggggtttaaacctctgaccttgcatatattatgcattgtccttaccaactgag 16133116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 22498987 - 22498950
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  22498987 ccttgcatatattatgcattgtccttaccaactgagtt 22498950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 34206272 - 34206235
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  34206272 ccttgcatatattatgcattgtctttaccaactgagtt 34206235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 39914946 - 39914909
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  39914946 ccttgcatatattatgcattgtccttaccaattgagtt 39914909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 43108614 - 43108577
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  43108614 ccttgcatatattatgcattgtccttaccaactgagtt 43108577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 15816812 - 15816732
Alignment:
Q  153 gtaatcttcctttgcaaactcaaaattcttctattgattattgcaactatgcattcattcatttcttctcttatttctatt 233  Q
    |||||||| ||||| || ||| ||| |  |||||| |||||||||| ||||  ||||||||||  ||||||||||||||||    
T  15816812 gtaatcttgctttgtaatctctaaactactctattaattattgcaattatgttttcattcattctttctcttatttctatt 15816732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 24408558 - 24408522
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcat 387  Q
    ||||||||||||||| | |||||||||||||||||||    
T  24408558 cggggtttgaaccccagaccttgcatatattatgcat 24408522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 26655538 - 26655474
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||| ||||||| | |||| ||||||||||||||||||  |||||| ||||    
T  26655538 ttggtggtggccggggttcgaaccccggaccttacatatattatgcattgtccataccaactgag 26655474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 26927123 - 26927059
Alignment:
Q  341 ttggtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||| |||||| ||||||| | |||| ||||||||||||||||||  |||||| ||||    
T  26927123 ttggtggtggccggggttcgaaccccggaccttacatatattatgcattgtccataccaactgag 26927059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 32200445 - 32200485
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||| ||||||||| | |||||||||||||||||||||||    
T  32200445 cggggcttgaaccccggaccttgcatatattatgcattgtc 32200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 34191496 - 34191456
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||| ||||||||||||    
T  34191496 cggggtttgaaccccggaccttgcatattttatgcattgtc 34191456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 42168944 - 42168996
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||| ||||||| | ||||||||||| ||||||||||| ||||||| ||||    
T  42168944 ggggttcgaaccccagaccttgcatatactatgcattgtccttaccaactgag 42168996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 42473954 - 42473918
Alignment:
Q  354 ggtttgaacccccggccttgcatatattatgcattgt 390  Q
    |||||||||||| | ||||||||||||||||||||||    
T  42473954 ggtttgaaccccggaccttgcatatattatgcattgt 42473918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 15920 - 15983
Alignment:
Q  344 gtggtggc-ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||| |||||||||||||| | ||||||||||||||| ||||||| ||||||| ||||||    
T  15920 gtggtggctggggtttgaaccccagaccttgcatatattatacattgtccttaccaattgagtt 15983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1127 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1127
Description:

Target: scaffold1127; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Original strand, 1164 - 1202
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgt 390  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  1164 ggggtttgaaccccggaccttgcatatattatgcattgt 1202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 25451 - 25397
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||| ||||||  | ||||||||||||||||||||||| ||||||| ||||||    
T  25451 ggggttcgaaccctggaccttgcatatattatgcattgtccttaccaactgagtt 25397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 161215 - 161149
Alignment:
Q  341 ttggtggtgg-cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||||| |||||||||||||||   |||||||||| ||||||||||||  |||||| ||||||    
T  161215 ttggtggtggtcggggtttgaaccccgaaccttgcatattttatgcattgtccataccaactgagtt 161149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 34904 - 34941
Alignment:
Q  369 ccttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  34904 ccttgcatatattatgcattgtccttaccaactgagtt 34941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 75380 - 75335
Alignment:
Q  359 gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  75380 gaaccccggaccttgcatatattatgcattgtccttaccaactgag 75335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 239870 - 239817
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| || | | ||||||||||||||||||||| ||||||| ||||    
T  239870 cggggtttgaactccggactttgcatatattatgcattgtccttaccaactgag 239817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 119773 - 119826
Alignment:
Q  240 ttaagctcatcatgagctaaacccctttttggttaagacatgatgatgttatga 293  Q
    |||| |||||||||||||||||||  |  ||||| |||||||||||||||||||    
T  119773 ttaaactcatcatgagctaaaccctgtagtggtttagacatgatgatgttatga 119826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 1602 - 1538
Alignment:
Q  341 ttggtggtggcggggttt-gaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    ||||||||||||||| || ||||||| | |||||||||| ||||||||||||  |||||| ||||    
T  1602 ttggtggtggcgggggttcgaaccccggaccttgcatattttatgcattgtccataccaactgag 1538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 8868 - 8904
Alignment:
Q  370 cttgcatatattatgcattgtcattaccaaatgagtt 406  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  8868 cttgcatatattatgcattgtccttaccaattgagtt 8904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 5244 - 5192
Alignment:
Q  352 ggggtttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||||| | | |||||||||||||||||||||||  |||||| ||||    
T  5244 ggggtttgaacctcagaccttgcatatattatgcattgtccataccaattgag 5192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 53378 - 53418
Alignment:
Q  351 cggggtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||||||| | |||||||||| ||||||||||||    
T  53378 cggggtttgaaccccagaccttgcatattttatgcattgtc 53418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 42337 - 42385
Alignment:
Q  356 tttgaacccccggccttgcatatattatgcattgtcattaccaaatgag 404  Q
    |||||||||| | ||||||||||||||||||||||| || |||| ||||    
T  42337 tttgaaccccagaccttgcatatattatgcattgtccttcccaactgag 42385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 99096 - 99060
Alignment:
Q  355 gtttgaacccccggccttgcatatattatgcattgtc 391  Q
    ||||||||||| | |||||||||||||||||||||||    
T  99096 gtttgaaccccagaccttgcatatattatgcattgtc 99060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3435 times since January 2019
Visitors: 6174