View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_55 (Length: 395)

Name: NF0856_high_55
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_55
NF0856_high_55
[»] chr5 (15 HSPs)
chr5 (29-384)||(9911987-9912342)
chr5 (37-271)||(26670671-26670911)
chr5 (37-271)||(26942268-26942508)
chr5 (37-271)||(36427035-36427273)
chr5 (37-271)||(42000098-42000336)
chr5 (37-271)||(39521820-39522060)
chr5 (37-271)||(560142-560382)
chr5 (37-271)||(36938678-36938918)
chr5 (130-366)||(15415975-15416221)
chr5 (34-148)||(13585053-13585167)
chr5 (205-298)||(24773539-24773632)
chr5 (205-298)||(17507894-17507987)
chr5 (188-271)||(23978644-23978729)
chr5 (205-298)||(41856411-41856504)
chr5 (205-264)||(42022804-42022863)
[»] chr2 (15 HSPs)
chr2 (29-236)||(9181940-9182151)
chr2 (37-271)||(30649582-30649822)
chr2 (37-271)||(30654264-30654504)
chr2 (37-271)||(17971851-17972091)
chr2 (55-265)||(27417371-27417585)
chr2 (31-292)||(30616308-30616576)
chr2 (34-287)||(40035952-40036209)
chr2 (54-161)||(28450624-28450732)
chr2 (188-236)||(25480086-25480135)
chr2 (188-236)||(25487692-25487741)
chr2 (58-99)||(25480209-25480250)
chr2 (58-99)||(25487815-25487856)
chr2 (205-298)||(42725630-42725723)
chr2 (205-298)||(44756782-44756875)
chr2 (34-91)||(3174044-3174101)
[»] scaffold0045 (1 HSPs)
scaffold0045 (29-236)||(81704-81912)
[»] chr8 (18 HSPs)
chr8 (35-271)||(8319817-8320057)
chr8 (41-236)||(40127095-40127295)
chr8 (37-146)||(38183920-38184029)
chr8 (37-236)||(23083097-23083301)
chr8 (37-236)||(4239542-4239746)
chr8 (35-236)||(25368957-25369161)
chr8 (37-162)||(34117025-34117150)
chr8 (34-156)||(17023623-17023744)
chr8 (34-156)||(17554116-17554237)
chr8 (188-271)||(17023801-17023885)
chr8 (188-271)||(17554294-17554378)
chr8 (33-287)||(19952765-19953024)
chr8 (205-298)||(21646264-21646357)
chr8 (205-298)||(32013518-32013611)
chr8 (189-236)||(38183826-38183873)
chr8 (208-292)||(19433269-19433353)
chr8 (208-292)||(19569419-19569503)
chr8 (33-98)||(4539862-4539927)
[»] chr3 (15 HSPs)
chr3 (37-271)||(23662599-23662839)
chr3 (37-271)||(8886602-8886842)
chr3 (34-236)||(18470605-18470810)
chr3 (37-158)||(3686779-3686900)
chr3 (188-366)||(12114108-12114290)
chr3 (38-236)||(12967044-12967245)
chr3 (164-236)||(24755721-24755793)
chr3 (164-236)||(24764718-24764790)
chr3 (205-298)||(3479129-3479222)
chr3 (205-298)||(15765201-15765294)
chr3 (205-298)||(17361897-17361990)
chr3 (205-298)||(17366539-17366632)
chr3 (205-298)||(20092832-20092925)
chr3 (33-91)||(48434820-48434878)
chr3 (202-262)||(48434644-48434704)
[»] scaffold0060 (1 HSPs)
scaffold0060 (35-271)||(49209-49449)
[»] chr1 (9 HSPs)
chr1 (37-236)||(25853783-25853987)
chr1 (37-236)||(10138692-10138900)
chr1 (78-236)||(16749967-16750129)
chr1 (61-161)||(47453463-47453563)
chr1 (205-284)||(893232-893311)
chr1 (34-140)||(18809820-18809924)
chr1 (205-298)||(27714263-27714356)
chr1 (205-298)||(37406598-37406691)
chr1 (205-298)||(5727937-5728030)
[»] chr4 (18 HSPs)
chr4 (37-271)||(31272146-31272388)
chr4 (37-242)||(19105406-19105615)
chr4 (37-236)||(32222387-32222590)
chr4 (37-161)||(33465623-33465747)
chr4 (37-150)||(37261172-37261285)
chr4 (53-161)||(39319071-39319179)
chr4 (190-271)||(16951353-16951434)
chr4 (187-298)||(36357115-36357226)
chr4 (29-198)||(41815389-41815556)
chr4 (205-298)||(13698330-13698423)
chr4 (205-298)||(21302015-21302108)
chr4 (191-236)||(33465544-33465589)
chr4 (205-298)||(40002061-40002154)
chr4 (205-298)||(54346195-54346288)
chr4 (37-91)||(15134740-15134794)
chr4 (68-158)||(30777986-30778076)
chr4 (205-264)||(8982501-8982560)
chr4 (188-236)||(37261078-37261130)
[»] chr7 (7 HSPs)
chr7 (37-161)||(21667959-21668083)
chr7 (62-236)||(10389561-10389739)
chr7 (205-298)||(33240995-33241088)
chr7 (205-298)||(47996792-47996885)
chr7 (54-95)||(4406223-4406264)
chr7 (49-139)||(15984856-15984946)
chr7 (188-265)||(30493025-30493101)
[»] scaffold0070 (1 HSPs)
scaffold0070 (35-236)||(61962-62166)
[»] scaffold0468 (1 HSPs)
scaffold0468 (35-231)||(411-610)
[»] chr6 (6 HSPs)
chr6 (59-289)||(15997785-15998019)
chr6 (34-148)||(10490784-10490898)
chr6 (34-292)||(17285033-17285295)
chr6 (205-298)||(22700428-22700521)
chr6 (58-148)||(19481272-19481362)
chr6 (41-95)||(12796134-12796188)
[»] scaffold0517 (1 HSPs)
scaffold0517 (205-298)||(1383-1476)
[»] scaffold0166 (1 HSPs)
scaffold0166 (205-298)||(15923-16016)
[»] scaffold0165 (1 HSPs)
scaffold0165 (205-298)||(14805-14898)
[»] scaffold0014 (1 HSPs)
scaffold0014 (205-298)||(29365-29458)
[»] scaffold0011 (1 HSPs)
scaffold0011 (34-292)||(4683-4945)
[»] scaffold0067 (1 HSPs)
scaffold0067 (60-150)||(31009-31099)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 29 - 384
Target Start/End: Original strand, 9911987 - 9912342
Alignment:
Q  29 acttatttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaat 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9911987 acttatttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatgtttcgctatttataacatacctaattaat 9912086  T
Q  129 acacattcatagactctactagtaagtttaacttggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtct 228  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||    
T  9912087 acacattcatagactctactagtaagtttaacttgaggttcgaaatctgaacttatgtcaaacaatcccaagttcaaaaataagacaagttgggttgtct 9912186  T
Q  229 tttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaacaaataataaacactcaccaatgagatacaat 328  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9912187 tttcttcaaaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaacaaataataaacactcaccaatgagatacaat 9912286  T
Q  329 atcgaaattaatcatgatttaaacaactagctcggtaagtcagctttaccgttcat 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9912287 atcgaaattaatcatgatttaaacaactagctcggtaagtcagctttaccgttcat 9912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 26670671 - 26670911
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||| ||| |||| ||||||    
T  26670671 catagaaatcggtgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatatacattc 26670770  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||||| |||| ||    |||||||| |  ||||  ||  ||    ||||||||||||||| |||||||||||||||||||||||||||||    
T  26670771 ataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttgggttgtctttt 26670870  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  26670871 cttcaaaaatttcttaattagaatttttgttcttagacttg 26670911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 26942268 - 26942508
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||| ||| |||| ||||||    
T  26942268 catagaaatcggtgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatatacattc 26942367  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||||| |||| ||    |||||||| |  ||||  ||  ||    ||||||||||||||| |||||||||||||||||||||||||||||    
T  26942368 ataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttgggttgtctttt 26942467  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  26942468 cttcaaaaatttcttaattagaatttttgttcttagacttg 26942508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 36427035 - 36427273
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||  |||||| |||||| |||||||||| |||||||||||    
T  36427035 catagaaatcgacatcttttaattctatgatcactttagcatttaagtcataaact-tatatgcttcgctgtttatagcatacctaatgaatacacattc 36427133  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtcttttc 232  Q
    |||| |||||||||| |||| ||    |||||| |||  | ||  ||  ||    |||||||||||||||||||||||||||||||||| ||||||||||    
T  36427134 ataggctctactagtgagttcaactctcttgggattcatagtcaaaatatagtccagacaatcccaagttaaaaaataagacaagttggattgtcttttc 36427233  T
Q  233 ttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    |||| || |||  ||| ||||| ||||||||||| |||||    
T  36427234 ttcaaaaatttcttaattagaatttttgttcttagacttg 36427273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 42000098 - 42000336
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||||||||||||| |||  ||||||||||| |||||| ||| |||||||||| |||||| ||| |||| ||||||    
T  42000098 catagaaatcggcgtcttttaattctatgatcactttaacat--aggtcataaaacctatatgttttgctatttatagcatacccaatgaatatacattc 42000195  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    ||||||||||||||| |||| ||    |||||||| |  ||||  ||  ||| ||||||||||| ||||| ||||||||||||||||||| || ||||||    
T  42000196 atagactctactagtgagttcaactctcttggggtccagaatctaaatatattttagacaatccgaagttcaaaaaataagacaagttggattatctttt 42000295  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  42000296 cttcaaaaatttcttaattagaatttttgttcttagacttg 42000336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 39521820 - 39522060
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||| ||| |||| ||||||    
T  39521820 catagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatatacattc 39521919  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||||| |||| ||    |||||||| |  ||||  ||  ||    | ||||| ||||||| |||||||||||||||||| ||||||||||    
T  39521920 ataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccacacaattccaagttcaaaaaataagacaagttgagttgtctttt 39522019  T
Q  232 ctt-cagaactttataagtagaaattttgttcttaaacttg 271  Q
    ||| || || ||  ||| ||||| |||||||||||||||||    
T  39522020 cttccaaaatttcttaattagaatttttgttcttaaacttg 39522060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 560142 - 560382
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||| ||| |||||||||| |||||| ||| |||| ||||||    
T  560142 catagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatgaatatacattc 560241  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||||| |||| ||    |||||| | |  ||||  ||  ||    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  560242 ataggctctactagtgagttcaactctcttgggatccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttggattgtctttt 560341  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  560342 cttcaaaaatttcttaattagaatttttgttcttagacttg 560382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 36938918 - 36938678
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||  |||||| ||| |||||||||| |||||| ||| |||| ||||||    
T  36938918 catagaaatcggcgtcttttaattctataatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatgaatatacattc 36938819  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||||| |||| ||    |||||||| |  ||||  ||  ||    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  36938818 ataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttggattgtctttt 36938719  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  36938718 cttcaaaaatttcttaattagaatttttgttcttagacttg 36938678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 130 - 366
Target Start/End: Complemental strand, 15416221 - 15415975
Alignment:
Q  130 cacattcatagactctactagtaagtttaact----tggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttg 225  Q
    |||| ||||||||||||||| |||||||||||    |||||| | |||||||||| |  || |||||| ||| | || |||||||||||||||| |||||    
T  15416221 cacactcatagactctactattaagtttaactctcttggggtccaaaatccgaacattggtcagacaaaccctaatttaaaaataagacaagttaggttg 15416122  T
Q  226 tcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaacaaataataaa----cactcaccaatgag 321  Q
    |||||| |||| ||||| | |||||||||||||||||||||| ||||| ||||| ||||||| |||  |||||| |||||||      |||||||| |||    
T  15416121 tctttttttcaaaacttcacaagtagaaattttgttcttaaatttgagtactctatttagcacataacaaacaattaataaaagtttcctcaccaacgag 15416022  T
Q  322 atacaatatcgaaattaatc--atgatttaaacaactagctcggtaa 366  Q
    ||||| ||   |||||||||  |||||||||||||||||||||||||    
T  15416021 atacagtactaaaattaatcatatgatttaaacaactagctcggtaa 15415975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 13585167 - 13585053
Alignment:
Q  34 tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacaca 133  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||| || ||||||||||| ||||||  ||  || ||||   |||||| ||| ||||||||    
T  13585167 tttcatagaaatcagaatcatttgattctatgatcactttagctttaaggtcataaaacctatatgctttactgtttaaggcatacccaatgaatacaca 13585068  T
Q  134 ttcatagactctact 148  Q
    ||||||| |||||||    
T  13585067 ttcataggctctact 13585053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 24773632 - 24773539
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || |||||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  24773632 aaaataagacaagtttggttgtcttttcttcaaaattttatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 24773539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 17507894 - 17507987
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  17507894 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 17507987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 23978729 - 23978644
Alignment:
Q  188 agacaatcccaagtt-aaaaaataagacaagttgggttgtcttttcttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||| || |||  ||| ||||||||| |||| ||||||||    
T  23978729 agacaatctcaagttcaaaaaataagacaagttggattgtcttttcttcaaaaatttcttaattagaaatttcgttcataaacttg 23978644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 41856411 - 41856504
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| || ||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  41856411 aaaataagacaagtttggctgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 41856504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 42022804 - 42022863
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttctt 264  Q
    ||||||||||||||| | |||||||||||||| || || ||| | |||||||||||||||    
T  42022804 aaaataagacaagtttgattgtcttttcttcaaaatttcatatggagaaattttgttctt 42022863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 29 - 236
Target Start/End: Complemental strand, 9182151 - 9181940
Alignment:
Q  29 acttatttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaat 128  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||| |||||||||||||||| ||| ||  |||  ||||||||||||||||||| |||    
T  9182151 acttacttcatagaaatcaacatcttttaattctatgatcactttaacatttaggtcataaaacctacatgcttcattatttataacatacctaatgaat 9182052  T
Q  129 acacattcatagactctactagtaagtttaact---tggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggtt 224  Q
    |||||||||||| ||||| | || |||||| ||   | ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||    
T  9182051 acacattcataggctctattggtgagtttatctctcttgggttcgaaattcgaacttatgtcagacaatcccaagttcaaaaaataagacaagttggatt 9181952  T
Q  225 gtcttttcttca 236  Q
    ||||||||||||    
T  9181951 gtcttttcttca 9181940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 30649582 - 30649822
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||| ||| |||| ||||||    
T  30649582 catagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatatacattc 30649681  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||||| |||| ||    |||||||| |  ||||  ||  ||    ||||||||||||||| |||||||||||||||||||||||||||||    
T  30649682 ataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttgggttgtctttt 30649781  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  30649782 cttcaaaaatttcttaattagaatttttgttcttagacttg 30649822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 30654264 - 30654504
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||| ||| |||||||||| |||||| ||| |||| ||||||    
T  30654264 catagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatgaatatacattc 30654363  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||||| |||| ||    |||||||| |  ||||  ||  ||| | ||||||||||||||| ||||||||||||||||||| |||||||||    
T  30654364 ataggctctactagtgagttcaactctcttggggtccagaatctaaatatatttcagacaatcccaagttcaaaaaataagacaagttggattgtctttt 30654463  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  30654464 cttcaaaaatttcttaattagaatttttgttcttagacttg 30654504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 17972091 - 17971851
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||| ||| |||||||||| |||||| ||| |||| ||||||    
T  17972091 catagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatgaatatacattc 17971992  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||||| |||| ||    |||||| | |  ||||  ||  ||    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  17971991 ataggctctactagtgagttcaactctcttgggatccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttggattgtctttt 17971892  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  17971891 cttcaaaaatttcttaattagaatttttgttcttagacttg 17971851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 265
Target Start/End: Complemental strand, 27417585 - 27417371
Alignment:
Q  55 ttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcatagactctactagtaag 154  Q
    |||||||||| ||||||||||||||| |||||||||| ||| ||  || || ||||||  |||||||||| |||| | |||||||  |||||||||| ||    
T  27417585 ttaattctataatcactttagcatttcggtcataaaacctagatgctttgcaatttatggcatacctaatgaataaaaattcataagctctactagtgag 27417486  T
Q  155 tttaact----tggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtcttttcttcagaactttataagta 250  Q
    |||||||    |||||| || ||||||| | ||  | |||||| |  || ||  ||| |||||||||||||||||||||||||||| || || |||||||    
T  27417485 tttaacttttatggggtccggaatccgatcatagatcagacaaccaaaaattcgaaattaagacaagttgggttgtcttttcttcaaaaattcataagta 27417386  T
Q  251 gaaattttgttctta 265  Q
     || |||||||||||    
T  27417385 aaatttttgttctta 27417371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 292
Target Start/End: Original strand, 30616308 - 30616576
Alignment:
Q  31 ttatttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaa--- 127  Q
    |||||| || ||||||  |||| ||| ||||||||||||||||||||||||| ||| |||| ||||||  || |||||||||| |||||| ||| ||       
T  30616308 ttattttattgaaatcaacatcgtttgattctatgatcactttagcatttagatcacaaaacctatatggtttgctatttatatcatacccaatgaaaaa 30616407  T
Q  128 tacacattcatagactctactagtaagtttaact----tggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggt 223  Q
    ||||  ||||||| || || |||| |||||||||    || |||   |||| | ||  || || | ||||||||||||| |||||||||||||||||       
T  30616408 tacaatttcataggctttattagtgagtttaactctcttgaggtctaaaattcaaatataggtcaaacaatcccaagttcaaaaataagacaagttgaac 30616507  T
Q  224 tgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatag 292  Q
     |||||||| ||| || || |||||||||||||||||||||| ||||||| || || ||||||| ||||    
T  30616508 ggtcttttcatcaaaatttcataagtagaaattttgttcttagacttgagtaccctatttagcacatag 30616576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 287
Target Start/End: Complemental strand, 40036209 - 40035952
Alignment:
Q  34 tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacaca 133  Q
    ||||||||||||| ||||| ||| ||| |||||||||||||| ||||| ||||||||   |||||  || |||||||| ||||||||  || ||||||||    
T  40036209 tttcatagaaatcagcatcatttgattatatgatcactttagaatttatgtcataaaccttatatgctttgctatttaaaacatacccgatgaatacaca 40036110  T
Q  134 ttcatagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtctt 229  Q
    | ||||| ||||||||   |||||||    ||| ||||  | ||||| ||| || || || ||| |||||||| ||||||| || || || |||||||||    
T  40036109 tccataggctctactatcgagtttaactctcttagggtctggaatcctaacataggtcaggcaaccccaagttcaaaaatatgagaattttggttgtctt 40036010  T
Q  230 ttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagca 287  Q
    ||||||  || || ||| | ||||||||||||| ||   ||| | |||||||||||||    
T  40036009 ttcttctaaatttcatagggagaaattttgttcctagttttgggtactctgtttagca 40035952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 28450624 - 28450732
Alignment:
Q  54 tttaattctatgatcactttagcatttaggtcat-aaaatctatatatttcgctatttataacatacctaattaatacacattcatagactctactagta 152  Q
    ||||||| |||| ||||||||||||||||||||| |||| ||||||  |  ||||||||||||||||| ||| || ||||||||| || ||||||||||     
T  28450624 tttaattttatgctcactttagcatttaggtcataaaaacctatatgatctgctatttataacatacccaatgaacacacattcacaggctctactagtg 28450723  T
Q  153 agtttaact 161  Q
    ||| |||||    
T  28450724 agtctaact 28450732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 25480135 - 25480086
Alignment:
Q  188 agacaatcccaagtt-aaaaaataagacaagttgggttgtcttttcttca 236  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25480135 agacaatcccaagttcaaaaaataagacaagttgggttgtcttttcttca 25480086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 25487741 - 25487692
Alignment:
Q  188 agacaatcccaagtt-aaaaaataagacaagttgggttgtcttttcttca 236  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25487741 agacaatcccaagttcaaaaaataagacaagttgggttgtcttttcttca 25487692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 25480250 - 25480209
Alignment:
Q  58 attctatgatcactttagcatttaggtcataaaatctatata 99  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  25480250 attctatgatcactttagcatttaggtcataaaacctatata 25480209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 25487856 - 25487815
Alignment:
Q  58 attctatgatcactttagcatttaggtcataaaatctatata 99  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  25487856 attctatgatcactttagcatttaggtcataaaacctatata 25487815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 42725723 - 42725630
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  42725723 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 42725630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 44756875 - 44756782
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  44756875 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 44756782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 3174101 - 3174044
Alignment:
Q  34 tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaa 91  Q
    ||||||||||||||  ||  ||| |||||||| ||||||||| |||||||||||||||    
T  3174101 tttcatagaaatcgatattgtttgattctatggtcactttagtatttaggtcataaaa 3174044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 81704 - 81912
Alignment:
Q  29 acttatttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaat 128  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||| ||||||||||||| ||||| |||    
T  81704 acttacttcatagaaatcagcatcttttaattctatgatcactttaacatttaggtcataaaacctatatgcttcgttatttataacatatctaatgaat 81803  T
Q  129 acacattcatagactctactagtaagtttaact---tggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggtt 224  Q
    |||||||||||| |||||||||| |||||| ||   | ||||||||||| |||||||||||    |||||||||||| ||||||||||||||||||| ||    
T  81804 acacattcataggctctactagtgagtttatctctcttgggttcgaaattcgaacttatgt---ccaatcccaagttcaaaaaataagacaagttggatt 81900  T
Q  225 gtcttttcttca 236  Q
    || |||||||||    
T  81901 gttttttcttca 81912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 271
Target Start/End: Complemental strand, 8320057 - 8319817
Alignment:
Q  35 ttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacat 134  Q
    ||||||||||||  |||  ||||| | |||||||||||||||||||| ||||||||| |||||   ||| ||| ||||| |||| | ||| ||| |||||    
T  8320057 ttcatagaaatcaacataatttaactttatgatcactttagcatttaagtcataaaacctataagcttccctaattatagcatatccaatgaatgcacat 8319958  T
Q  135 tcatagactctactagtaagtttaact---tggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtctttt 231  Q
    |||||| |||||||||| |||||||||   | || |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  8319957 tcataggctctactagtgagtttaactctcttggcttcgaaatccgaacttatgtcagacaatcccaagttcaaaaataagacaagttggattgtctttt 8319858  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  8319857 cttcaaaaatttcttaattagaatttttgttcttagacttg 8319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 40127295 - 40127095
Alignment:
Q  41 gaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcatag 140  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||| |||||| ||| |||| ||||||||||    
T  40127295 gaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgttttgctatttatagcatacccaatgaatatacattcatag 40127196  T
Q  141 actctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaag-ttaaaaaataagacaagttgggttgtcttttcttc 235  Q
     |||||||||| |||| ||    |||||||| | |||||  ||  ||    ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  40127195 gctctactagtgagttcaactctcttggggtccaaaatctaaatatagtccagacaattccaagtttaaaaaataagacaagttgggttgtcttttcttc 40127096  T
Q  236 a 236  Q
    |    
T  40127095 a 40127095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 38184029 - 38183920
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| ||| |||||||||||    
T  38184029 catagaaatcgacatcttttaattctatgatcactttagcatttaggtcataaaacctatatatttccctatttatagcatacccaatgaatacacattc 38183930  T
Q  137 atagactcta 146  Q
    |||| |||||    
T  38183929 ataggctcta 38183920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 23083301 - 23083097
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |||||| |||||||||||||| |||||| ||| |||| ||||||    
T  23083301 catagaaatcggcgtcttttaattctatgatcactttaacatttaggtaataaaacctatatgtttcgctatttatagcatacccaatgaatatacattc 23083202  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| ||||||| || |||| ||    |||||||| |  ||||  ||  ||    ||||||||||||||| ||||||||||||||||| |||||||||||    
T  23083201 ataggctctactggtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttaggttgtctttt 23083102  T
Q  232 cttca 236  Q
    |||||    
T  23083101 cttca 23083097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 4239746 - 4239542
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||| ||| |||||||||| |||||| ||| |||| ||||||    
T  4239746 catagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatgaatatacattc 4239647  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| || ||||||| |||| ||    |||||||| |  ||||  ||  ||    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  4239646 ataggctgtactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttggattgtctttt 4239547  T
Q  232 cttca 236  Q
    |||||    
T  4239546 cttca 4239542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 25369161 - 25368957
Alignment:
Q  35 ttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacat 134  Q
    ||||||||||||  |||| ||| | | |||||||||||||||||||||||||||||| |||||   ||  ||| |||||  ||||| ||| ||| |||||    
T  25369161 ttcatagaaatcaacatcgtttgactttatgatcactttagcatttaggtcataaaacctataagctttcctaattatattatacccaatgaatgcacat 25369062  T
Q  135 tcatagactctactagtaagtttaacttg---gggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtctttt 231  Q
    |||||| |||||||||| ||||||||||    ||||||||||| |||||| |||| |  |||||||||||| |||||||||||||||||| ||||||||     
T  25369061 tcataggctctactagtgagtttaactttcttgggttcgaaattcgaactcatgtcaagcaatcccaagttcaaaaataagacaagttggattgtcttta 25368962  T
Q  232 cttca 236  Q
    |||||    
T  25368961 cttca 25368957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 34117025 - 34117150
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||  |||| ||| |||||||||||||||||||||||||||||||||| ||||||  ||  |||||||||||||||| ||| |||||||||||    
T  34117025 catagaaatcaacatcattttattctatgatcactttagcatttaggtcataaaacctatatgattttctatttataacatacccaatgaatacacattc 34117124  T
Q  137 atagactctactagtaagtttaactt 162  Q
    |||| |||||||||| |||| |||||    
T  34117125 ataggctctactagtgagttcaactt 34117150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 17023623 - 17023744
Alignment:
Q  34 tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacaca 133  Q
    ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||| ||||||  |||||| |||||  |||||||||| ||||||||    
T  17023623 tttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcat-aaacctatatgcttcgctgtttattgcatacctaatgaatacaca 17023721  T
Q  134 ttcatagactctactagtaagtt 156  Q
    ||||||| |||||||||| ||||    
T  17023722 ttcataggctctactagtgagtt 17023744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 17554116 - 17554237
Alignment:
Q  34 tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacaca 133  Q
    ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||| ||||||  |||||| |||||  |||||||||| ||||||||    
T  17554116 tttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcat-aaacctatatgcttcgctgtttattgcatacctaatgaatacaca 17554214  T
Q  134 ttcatagactctactagtaagtt 156  Q
    ||||||| |||||||||| ||||    
T  17554215 ttcataggctctactagtgagtt 17554237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 17023801 - 17023885
Alignment:
Q  188 agacaatcccaagttaaaaaataagacaagttgggttgtcttttcttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||| || |||  ||| ||||| ||||||||||| |||||    
T  17023801 agacaatcccaagttcaaaaataagacaagttggattgtcttttcttcaaaaatttcttaattagaatttttgttcttagacttg 17023885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 17554294 - 17554378
Alignment:
Q  188 agacaatcccaagttaaaaaataagacaagttgggttgtcttttcttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||| || |||  ||| ||||| ||||||||||| |||||    
T  17554294 agacaatcccaagttcaaaaataagacaagttggattgtcttttcttcaaaaatttcttaattagaatttttgttcttagacttg 17554378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 287
Target Start/End: Original strand, 19952765 - 19953024
Alignment:
Q  33 atttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacac 132  Q
    |||||| |||||||  |||| ||| ||||||||||||| ||| |||||| ||||||||| ||||| ||||  |  || ||  |||||||||| ||| |||    
T  19952765 atttcaaagaaatcatcatcgtttgattctatgatcacattaacatttaagtcataaaacctatacattttccggttaatttcatacctaataaattcac 19952864  T
Q  133 attcatagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagt-taaaaaataagacaagttgggttgtc 227  Q
    |||||||| ||||| |||| ||||| |    |||||| || | ||||||||  || |  | ||||||||||||  ||||||||||||||| |   |||||    
T  19952865 attcataggctctattagtgagttttactctcttgggatttggaatccgaagataggccaaacaatcccaagtccaaaaaataagacaagatatattgtc 19952964  T
Q  228 ttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagca 287  Q
    ||||||||| || || |||  |||||||||| |||||| | |  |||||||| |||||||    
T  19952965 ttttcttcaaaatttcatagctagaaatttttttcttagattaaagcactctatttagca 19953024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 21646357 - 21646264
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  21646357 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 21646264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 32013518 - 32013611
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  32013518 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggaactctgtttagcacatagcaaaca 32013611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 38183873 - 38183826
Alignment:
Q  189 gacaatcccaagttaaaaaataagacaagttgggttgtcttttcttca 236  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||||    
T  38183873 gacaatcccaagttcaaaaataagacaagttggattgtattttcttca 38183826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 19433269 - 19433353
Alignment:
Q  208 ataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatag 292  Q
    |||||||||||| |||||||||||||||| || || ||| | ||||| ||||||||||   ||| | ||||||||||||| ||||    
T  19433269 ataagacaagtttggttgtcttttcttcaaaatttcatagggagaaactttgttcttagttttgggtactctgtttagcacatag 19433353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 19569419 - 19569503
Alignment:
Q  208 ataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatag 292  Q
    |||||||||||| |||||||||||||||| || || ||| | ||||| ||||||||||   ||| | ||||||||||||| ||||    
T  19569419 ataagacaagtttggttgtcttttcttcaaaatttcatagggagaaactttgttcttagttttgggtactctgtttagcacatag 19569503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 4539927 - 4539862
Alignment:
Q  33 atttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatat 98  Q
    ||||||||||||||  |||| ||| ||||||||||||| | | |||||||||| ||||| ||||||    
T  4539927 atttcatagaaatcatcatcgtttgattctatgatcacatcaacatttaggtcgtaaaacctatat 4539862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 23662839 - 23662599
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    |||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||| ||| |||| ||||||    
T  23662839 catagaaatcagcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatatacattc 23662740  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||||| |||||||    |||||||| |  ||||  ||  ||    ||||||||||||||| ||||||||||| |||||||||||||||||    
T  23662739 ataggctctactagtgagtttaactctcttggggtccagaatctaaatatagtacagacaatcccaagttcaaaaaataagataagttgggttgtctttt 23662640  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  23662639 cttcaaaaatttcttaattagaatttttgttcttagacttg 23662599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 8886602 - 8886842
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||| ||| |||| ||||||    
T  8886602 catagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgttttgctatttataacatacccaatgaatatacattc 8886701  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||| | |||| ||    |||||||| |  ||||  ||  ||    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  8886702 ataggctctactaatgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttggattgtctttt 8886801  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  8886802 cttcaaaaatttcttaattagaatttttgttcttagacttg 8886842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 18470605 - 18470810
Alignment:
Q  34 tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacaca 133  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||  |||||| |||||| |||||||||| ||||||||    
T  18470605 tttcatagaaatcgccatcttttaattctatgatcactttagcatttaggtcat-aaacctatatgcttcgctgtttatagcatacctaatgaatacaca 18470703  T
Q  134 ttcatagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtctt 229  Q
    ||||||| |||||||||| |||| ||    |||||| |||  | ||  ||  ||    ||||||||||||||| |||||||||||||||||| |||||||    
T  18470704 ttcataggctctactagtgagttcaactctcttgggattcagagtcaaaatatagtccagacaatcccaagttcaaaaataagacaagttggattgtctt 18470803  T
Q  230 ttcttca 236  Q
    |||||||    
T  18470804 ttcttca 18470810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 3686779 - 3686900
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||| ||| |||||||||| |||||| ||| |||| ||||||    
T  3686779 catagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatgaatatacattc 3686878  T
Q  137 atagactctactagtaagttta 158  Q
    |||| |||||||||| ||||||    
T  3686879 ataggctctactagtgagttta 3686900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 188 - 366
Target Start/End: Complemental strand, 12114290 - 12114108
Alignment:
Q  188 agacaatcccaagttaaaaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagca 287  Q
    |||||||||||| || |||||||| ||||||||  |||||||||| ||| ||||| |||||||||||||||||||||| ||||||| ||||| ||||| |    
T  12114290 agacaatcccaacttcaaaaataaaacaagttgaattgtcttttcgtcaaaacttcataagtagaaattttgttcttagacttgagtactctatttagaa 12114191  T
Q  288 tatagtaaacaaataataaa----cactcaccaatgagatacaatatcgaaattaatcatgatttaaacaactagctcggtaa 366  Q
     |||  |||||| |||||||    | |||||||||||||||||||| | ||||| | ||||||||||||||||  ||||||||    
T  12114190 catatcaaacaattaataaaatttccctcaccaatgagatacaataccaaaattgaacatgatttaaacaactgcctcggtaa 12114108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 12967245 - 12967044
Alignment:
Q  38 atagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattca 137  Q
    |||||||||  |||| ||| |||||||||||||||||||||||||||||||||| ||||||  ||  |||||||||||||||| ||| ||||||||||||    
T  12967245 atagaaatcaacatcgttttattctatgatcactttagcatttaggtcataaaacctatatgattttctatttataacatacccaatgaatacacattca 12967146  T
Q  138 tagactctactagtaagtttaact---tggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtcttttctt 234  Q
    ||| |||||| ||| ||||||| |   | |||| | |||| | ||  ||    ||||||| |||||||  ||||||||||||||||||||||||||||||    
T  12967145 taggctctaccagtgagtttaattctcttgggtccaaaattcaaatatagtccagacaattccaagttccaaaataagacaagttgggttgtcttttctt 12967046  T
Q  235 ca 236  Q
    ||    
T  12967045 ca 12967044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 24755793 - 24755721
Alignment:
Q  164 gggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtcttttcttca 236  Q
    ||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||    
T  24755793 gggtttgaaatccaaacttatgtcaaacaatcccaagttaaaaaataagacaagttggattgtcttttcttca 24755721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 24764790 - 24764718
Alignment:
Q  164 gggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtcttttcttca 236  Q
    ||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||    
T  24764790 gggtttgaaatccaaacttatgtcaaacaatcccaagttaaaaaataagacaagttggattgtcttttcttca 24764718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 3479222 - 3479129
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  3479222 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 3479129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 15765294 - 15765201
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  15765294 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 15765201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 17361897 - 17361990
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  17361897 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 17361990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 17366539 - 17366632
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  17366539 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 17366632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 20092925 - 20092832
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  20092925 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 20092832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 48434878 - 48434820
Alignment:
Q  33 atttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaa 91  Q
    ||||||||||||||  |||||||| ||||||||||||| | | |||||| |||||||||    
T  48434878 atttcatagaaatcatcatcttttgattctatgatcacataaacatttaagtcataaaa 48434820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 48434704 - 48434644
Alignment:
Q  202 taaaaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttc 262  Q
    |||||||||||||||| | | |||||||||||||| || || |||  ||||||||||||||    
T  48434704 taaaaaataagacaagatagattgtcttttcttcaaaatttcatagctagaaattttgttc 48434644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 35 - 271
Target Start/End: Complemental strand, 49449 - 49209
Alignment:
Q  35 ttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacat 134  Q
    ||||||||||||  |||| ||| | | |||| ||| ||||||||||||||||||||| |||||   ||| ||| ||||| |||||| ||| |||  ||||    
T  49449 ttcatagaaatcaacatcgtttgactttatggtcaatttagcatttaggtcataaaacctataagcttccctaattatagcatacccaatgaatgtacat 49350  T
Q  135 tcatagactctactagtaagtttaact---tggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtctttt 231  Q
    |||||| || ||||||| |||||||||   | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  49349 tcataggctttactagtgagtttaactctcttgggttcgaaatccgaacttatgtcagacaatcccaagttcaaaaataagacaagttggattgtctttt 49250  T
Q  232 cttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||| || |||  ||| ||||| ||||||||||| |||||    
T  49249 cttcaaaaatttcttaattagaatttttgttcttagacttg 49209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 25853783 - 25853987
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||  ||| |||| ||||||    
T  25853783 catagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatactcaatgaatatacattc 25853882  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctttt 231  Q
    |||| |||||||||| |||| ||    |||||||| |  ||||  ||  ||    ||||||||||||||| |||||||||||||||||||||||||||||    
T  25853883 ataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttgggttgtctttt 25853982  T
Q  232 cttca 236  Q
    |||||    
T  25853983 cttca 25853987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 10138692 - 10138900
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctattt-----ataacatacctaattaataca 131  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||     ||| |||||| ||| |||| |    
T  10138692 catagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaa-ctatatgtttcgctatttatagcataccatacccaatgaatata 10138790  T
Q  132 cattcatagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaag-ttaaaaaataagacaagttgggttgt 226  Q
    ||||||||| |||||||||| |||| ||    |||||||| |  ||||  ||  ||    ||||||||||||| ||||||||||||||||||||||||||    
T  10138791 cattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagtttaaaaaataagacaagttgggttgt 10138890  T
Q  227 cttttcttca 236  Q
    ||||||||||    
T  10138891 cttttcttca 10138900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 16750129 - 16749967
Alignment:
Q  78 tttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcatagactctactagtaagtttaa----cttggggttcgaaa 173  Q
    |||||||||||||| ||||||  |||||||||||||||||||| ||| |||||| |||||||| |||||||||| |||| ||    |||||||| |  ||    
T  16750129 tttaggtcataaaacctatatgcttcgctatttataacatacccaatgaatacatattcataggctctactagtgagttcaactctcttggggtccagaa 16750030  T
Q  174 tccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtcttttcttca 236  Q
    ||| ||  ||    ||||||||||||||| || ||||||||||||||  ||||||||||||||    
T  16750029 tccaaatatagtccagacaatcccaagttcaataataagacaagttgaattgtcttttcttca 16749967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 161
Target Start/End: Complemental strand, 47453563 - 47453463
Alignment:
Q  61 ctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcatagactctactagtaagtttaac 160  Q
    |||||||||||||| |||||||||||||||| ||||||  ||   ||||||||||||||| ||| ||||||||||||| |||||||||||| |||| |||    
T  47453563 ctatgatcactttaacatttaggtcataaaacctatatgattttttatttataacatacccaatgaatacacattcattgactctactagtgagttcaac 47453464  T
Q  161 t 161  Q
    |    
T  47453463 t 47453463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 893232 - 893311
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgttta 284  Q
    |||||||||  |||||| |||||||||||||| || || |||||||||||||||||||||| ||||| | ||||| ||||    
T  893232 aaaataagattagttggattgtcttttcttcaaaatttcataagtagaaattttgttcttagacttgggtactctattta 893311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 18809820 - 18809924
Alignment:
Q  34 tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacaca 133  Q
    ||||||| ||| || |||| ||| |||||| ||| |||||||||||||||||||||||   |||| ||| |||||||||| ||||||  || ||||||||    
T  18809820 tttcatacaaaccgacatcatttgattctaagattactttagcatttaggtcataaaa--catatgttttgctatttatagcatacccgatgaatacaca 18809917  T
Q  134 ttcatag 140  Q
    |||||||    
T  18809918 ttcatag 18809924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 27714263 - 27714356
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  27714263 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 27714356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 37406691 - 37406598
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  37406691 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 37406598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 5727937 - 5728030
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | ||||||||| |||||    ||| | ||||||||||||| |||| |||||    
T  5727937 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttattctttgttttgggtactctgtttagcacatagcaaaca 5728030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 31272146 - 31272388
Alignment:
Q  37 catagaaatcggcatctttta--attctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacat 134  Q
    |||||||||| || |||||||  ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||| ||| |||| ||||    
T  31272146 catagaaatcagcgtcttttataattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatatacat 31272245  T
Q  135 tcatagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtctt 229  Q
    |||||| |||||||||| |||||||    |||||||| |  ||||  ||  ||    ||||||||||||||| ||||||||||| |||||||||||||||    
T  31272246 tcataggctctactagtgagtttaactctcttggggtccagaatctaaatatagtacagacaatcccaagttcaaaaaataagataagttgggttgtctt 31272345  T
Q  230 ttcttcagaacttt-ataagtagaaattttgttcttaaacttg 271  Q
    ||||||| || |||  ||| ||||| ||||||||||| |||||    
T  31272346 ttcttcaaaaatttcttaattagaatttttgttcttagacttg 31272388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 37 - 242
Target Start/End: Original strand, 19105406 - 19105615
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||  |||||||||  |||||||||||||||||||||||||||||||| |||||| ||| | |||||||| |||| | ||| |||||||||||    
T  19105406 catagaaatcaacatcttttatatctatgatcactttagcatttaggtcataaaacctatatgttttgttatttatagcatatccaatgaatacacattc 19105505  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtcttttc 232  Q
    ||||| | ||||||| |||| ||    |||||||| |  ||| | ||  ||  | ||||||||||||||| |||||||||||||||||||||||||||||    
T  19105506 atagaatttactagtgagttcaactttcttggggtcccgaattcaaatatagttcagacaatcccaagttcaaaaataagacaagttgggttgtcttttc 19105605  T
Q  233 ttcagaactt 242  Q
    |||| |||||    
T  19105606 ttcaaaactt 19105615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 32222590 - 32222387
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    |||| |||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||  ||| |||||| ||||    
T  32222590 catataaatcgacatcgttttattctatgatcactttagcatttaggtcataaaacctatatgcttcgctatttataacatactcaatgaatacatattc 32222491  T
Q  137 atagactctactagtaagtttaa----cttggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtcttttc 232  Q
    |||| |||||||||| |||| ||    |||||||| |  ||||| ||  |   | |||  |||||||||| |||||||||||||||||||||||||||||    
T  32222490 ataggctctactagtgagttcaactttcttggggtccagaatccaaatatggttcagatgatcccaagttcaaaaataagacaagttgggttgtcttttc 32222391  T
Q  233 ttca 236  Q
    ||||    
T  32222390 ttca 32222387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 33465747 - 33465623
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||| |||||| ||||    
T  33465747 catagatatcgatatcttttaattctatgatcactttagcatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatacatattc 33465648  T
Q  137 atagactctactagtaagtttaact 161  Q
    |||| |||||||||| |||| ||||    
T  33465647 ataggctctactagtgagttcaact 33465623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 37261285 - 37261172
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||| ||| |||| ||||||    
T  37261285 catagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatatacattc 37261186  T
Q  137 atagactctactag 150  Q
    |||  |||||||||    
T  37261185 atatgctctactag 37261172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 39319071 - 39319179
Alignment:
Q  53 ttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcatagactctactagta 152  Q
    ||||||||||||||||||||||||||| |||||||||||   ||||  ||||||| |||||||||||| |||||||||| |||||||| ||||||||||     
T  39319071 ttttaattctatgatcactttagcattgaggtcataaaactgatatgcttcgctaattataacatacccaattaatacatattcataggctctactagtg 39319170  T
Q  153 agtttaact 161  Q
    |||||||||    
T  39319171 agtttaact 39319179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 16951353 - 16951434
Alignment:
Q  190 acaatcccaagttaaaaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttg 271  Q
    |||||| |||||||||||||||||||||||||||| ||||||||| | |  || |||||||||||||||||||||| |||||    
T  16951353 acaatcacaagttaaaaaataagacaagttgggttatcttttcttaaaattttcataagtagaaattttgttcttagacttg 16951434  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 36357115 - 36357226
Alignment:
Q  187 tagacaatcccaagttaaaaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagc 286  Q
    ||||||| |||| |||  ||||||||||||||| |||||||||||||||| || || ||| | ||||||||||||||| |  ||| | ||||||||||||    
T  36357115 tagacaaccccatgttctaaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttattttgggaactctgtttagc 36357214  T
Q  287 atatagtaaaca 298  Q
    | |||| |||||    
T  36357215 acatagcaaaca 36357226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 41815389 - 41815556
Alignment:
Q  29 acttatttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaat 128  Q
    ||||| |||||| ||||| |||||  || | | |||||||||||||||||||||||||||||| |||||   ||| ||| ||     ||||| ||| |||    
T  41815389 acttacttcataaaaatcagcatcgcttgactttatgatcactttagcatttaggtcataaaacctataagcttccctaatt-----atacccaatgaat 41815483  T
Q  129 acacattcatagactctactagtaagtttaact---tggggttcgaaatccgaacttatgttagacaatccca 198  Q
     ||||||||||| |||||||||| |||||||||   | ||| ||||||| ||||||||||| | |||||||||    
T  41815484 tcacattcataggctctactagtgagtttaactctcttgggatcgaaattcgaacttatgtcaaacaatccca 41815556  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 13698330 - 13698423
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  13698330 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 13698423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 21302108 - 21302015
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  21302108 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 21302015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 33465589 - 33465544
Alignment:
Q  191 caatcccaagttaaaaaataagacaagttgggttgtcttttcttca 236  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||    
T  33465589 caatctcaagttcaaaaataagacaagttgggttgtcttttcttca 33465544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 40002061 - 40002154
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  40002061 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 40002154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 54346195 - 54346288
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  54346195 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 54346288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 15134794 - 15134740
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaa 91  Q
    ||||||||||| |||| ||||| |||||| ||||||| |||||||||||||||||    
T  15134794 catagaaatcgacatcgtttaagtctatgctcacttttgcatttaggtcataaaa 15134740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 30777986 - 30778076
Alignment:
Q  68 cactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcatagactctactagtaagttta 158  Q
    |||||||||||||||||||||||||||||||  |  |||| || || |||||   || ||||| |||||||| ||||||||||| ||||||    
T  30777986 cactttagcatttaggtcataaaatctatatgatcggctacttgtatcatacacgataaatactcattcatatactctactagtgagttta 30778076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 8982560 - 8982501
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttctt 264  Q
    |||| |||||||||| |||||||||||||||| || || ||| | |||||||||||||||    
T  8982560 aaaaaaagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctt 8982501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 37261130 - 37261078
Alignment:
Q  188 agacaatcccaagtt-aaaaaataagacaa---gttgggttgtcttttcttca 236  Q
    ||||||||||||||| ||||||||||||||   ||||||||||||||||||||    
T  37261130 agacaatcccaagtttaaaaaataagacaattagttgggttgtcttttcttca 37261078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 21667959 - 21668083
Alignment:
Q  37 catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattc 136  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||  ||| |||||||||||    
T  21667959 catagaaatcgacatcttttaattatatgatcactttagcatttaggtcataaaatctatatgattcactatttataacatactcaatgaatacacattc 21668058  T
Q  137 atagactctactagtaagtttaact 161  Q
    |||| |||||||||| |||| ||||    
T  21668059 ataggctctactagtgagttcaact 21668083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 10389739 - 10389561
Alignment:
Q  62 tatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcatagactctactagtaagtttaa-- 159  Q
    ||||||| ||||||||||||||| ||||||||||||| |||| ||||||||| |||||| | | ||||||||||||||| |||||| ||| |||| ||      
T  10389739 tatgatccctttagcatttaggtgataaaatctatatgtttcactatttatagcatacccattgaatacacattcataggctctaccagtgagttcaact 10389640  T
Q  160 --cttggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtcttttcttca 236  Q
      |||||||| |  ||| | ||  ||    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10389639 ctcttggggtccagaattcaaatatagtccagacaatcccaaattaaaaaataagacaagttgggttgtcttttcttca 10389561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 33240995 - 33241088
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  33240995 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 33241088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 47996792 - 47996885
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  47996792 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 47996885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 4406264 - 4406223
Alignment:
Q  54 tttaattctatgatcactttagcatttaggtcataaaatcta 95  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  4406264 tttaattctatgatcattatagcatttaggtcataaaatcta 4406223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 15984856 - 15984946
Alignment:
Q  49 catcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcata 139  Q
    |||| ||| ||| ||||| ||||||||||||||| ||||||||  |||||  || |||||||||  |||||| ||| |||||| |||||||    
T  15984856 catcgtttgattttatgaccactttagcatttagttcataaaacttatatgctttgctatttatgtcatacccaatgaatacaaattcata 15984946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 30493025 - 30493101
Alignment:
Q  188 agacaatcccaagttaaaaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttctta 265  Q
    |||||| | |||||| |||||||||||| ||| |||| | ||||||||| ||||| ||||| |||||||||| |||||    
T  30493025 agacaacctcaagtttaaaaataagacatgtt-ggttatattttcttcaaaacttcataaggagaaattttgctctta 30493101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 61962 - 62166
Alignment:
Q  35 ttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacat 134  Q
    ||||||||||||  |||| ||| | | |||||||||||||||||||||||||||||| |||||   ||  ||| |||||  ||||| ||| ||| |||||    
T  61962 ttcatagaaatcaacatcgtttgactttatgatcactttagcatttaggtcataaaacctataagctttcctaattatattatacccaatgaatgcacat 62061  T
Q  135 tcatagactctactagtaagtttaacttg---gggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtctttt 231  Q
    |||||| |||||||||| ||||||||||    ||||||||||| |||||| |||| |  |||||||||||| |||||||||||||||||| ||||||||     
T  62062 tcataggctctactagtgagtttaactttcttgggttcgaaattcgaactcatgtcaagcaatcccaagttcaaaaataagacaagttggattgtcttta 62161  T
Q  232 cttca 236  Q
    |||||    
T  62162 cttca 62166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 610 - 411
Alignment:
Q  35 ttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacat 134  Q
    |||||| ||||| ||||| ||| | | ||||||||| ||||||||||||||||||||  ||||   ||| ||| ||||| |||||| ||| |||||||||    
T  610 ttcataaaaatcagcatcatttgactttatgatcacgttagcatttaggtcataaaacatataagcttccctaattatagcatacccaatgaatacacat 511  T
Q  135 tcatagactctactagtaagtttaac---ttggggttcgaaatccgaacttatgttagacaatcccaagtt-aaaaaataagacaagttgggttgtcttt 230  Q
    ||||||||||||||||| ||||||||    | |||||||||||| ||||||||| | |||||| ||||||| ||||||||||||||||||| |||| |||    
T  510 tcatagactctactagtgagtttaacgctcttgggttcgaaatctgaacttatg-tcgacaataccaagttcaaaaaataagacaagttggattgtgttt 412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 289
Target Start/End: Complemental strand, 15998019 - 15997785
Alignment:
Q  59 ttctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcatagactctactagtaagttta 158  Q
    ||||||||||||||||||||||||||||||||| ||||||  ||| | ||||| | ||||| |||| ||||||||||||||| |||| ||||  |||| |    
T  15998019 ttctatgatcactttagcatttaggtcataaaacctatatgcttcacaatttaaagcatacttaatgaatacacattcataggctctgctagcgagttca 15997920  T
Q  159 a----cttggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtcttttcttcagaactttataagtagaaa 254  Q
    |    ||||||||||  ||||| ||  ||    |||| | |||||| | ||||||||||||  ||  ||||| ||||||| | ||||| |||||| ||||    
T  15997919 agtctcttggggttcagaatccaaatataatccagactaccccaagcttaaaaataagacatctttagttgtgttttctttaaaacttcataagttgaaa 15997820  T
Q  255 ttttgttcttaaacttgagcactctgtttagcata 289  Q
    ||||| ||||| | ||||| ||||| |||| ||||    
T  15997819 ttttggtcttagagttgagtactctatttaacata 15997785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 10490784 - 10490898
Alignment:
Q  34 tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacaca 133  Q
    ||||||||||||| |  || ||| ||||||||||||||||||| |  ||||||||||| ||||||  ||  || ||||   |||||| ||| ||||||||    
T  10490784 tttcatagaaatcagtttcatttgattctatgatcactttagcttcaaggtcataaaacctatatgctttactctttaaggcatacccaatgaatacaca 10490883  T
Q  134 ttcatagactctact 148  Q
    |||||||||||||||    
T  10490884 ttcatagactctact 10490898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 292
Target Start/End: Complemental strand, 17285295 - 17285033
Alignment:
Q  34 tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacaca 133  Q
    ||||||||||||  || || ||| |||||||||||| |||||| || ||||||||||| ||||||  ||  || ||||   |||||| ||| ||||||||    
T  17285295 tttcatagaaattagcgtcatttcattctatgatcattttagctttaaggtcataaaagctatatgctttactgtttaaggcatacccaatgaatacaca 17285196  T
Q  134 ttcatagactctactagtaagtttaact----tggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtctt 229  Q
    ||||||| ||||||| || ||||| |||    | ||||| | ||||| ||| |  | || || | || | ||| ||| |||||||||||| |||||||||    
T  17285195 ttcataggctctacttgttagtttgactcttttagggttaggaatcctaacattggctaaaccacccgatgttcaaatataagacaagtttggttgtctt 17285096  T
Q  230 ttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatag 292  Q
    ||||| | || || ||| | ||||| ||||||||||   ||| ||| ||||||||||| ||||    
T  17285095 ttcttaaaaatttcatagggagaaaatttgttcttagttttgggcagtctgtttagcacatag 17285033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 22700521 - 22700428
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  22700521 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 22700428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 19481272 - 19481362
Alignment:
Q  58 attctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcatagactctact 148  Q
    ||||||||||||||||||| || ||||||||||| ||||||  ||  || ||||   |||||| ||| ||||||||||||||| |||||||    
T  19481272 attctatgatcactttagctttaaggtcataaaacctatattctttactgtttaaggcatacccaatgaatacacattcataggctctact 19481362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 12796188 - 12796134
Alignment:
Q  41 gaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatcta 95  Q
    |||||||| ||| ||| ||||||| | ||||| ||||||||||||||||||||||    
T  12796188 gaaatcgggatcgtttgattctataaccacttaagcatttaggtcataaaatcta 12796134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 1383 - 1476
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  1383 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 1476  T

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Target: scaffold0166 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 16016 - 15923
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  16016 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 15923  T

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Target: scaffold0165 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 14805 - 14898
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  14805 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 14898  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 29365 - 29458
Alignment:
Q  205 aaaataagacaagttgggttgtcttttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatagtaaaca 298  Q
    ||||||||||||||| |||||||||||||||| || || ||| | |||||||||||||||    ||| | ||||||||||||| |||| |||||    
T  29365 aaaataagacaagtttggttgtcttttcttcaaaatttcatatggagaaattttgttctttgttttgggtactctgtttagcacatagcaaaca 29458  T

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Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 292
Target Start/End: Original strand, 4683 - 4945
Alignment:
Q  34 tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacaca 133  Q
    ||||||||||||| |  || ||| ||| ||||||||||||||| || ||||||||||| ||||||  ||  || ||||   |||||| ||| ||||||||    
T  4683 tttcatagaaatcagagtcatttgattatatgatcactttagctttaaggtcataaaagctatatgctttactgtttaaggcatacccaatgaatacaca 4782  T
Q  134 ttcatagactctactagtaagtttaact----tggggttcgaaatccgaacttatgttagacaatcccaagttaaaaaataagacaagttgggttgtctt 229  Q
    ||||||| ||||||| |  ||||| |||    | ||||| | ||||| ||| || | || | |  |||| |||  || |||||||||||| |||||||||    
T  4783 ttcataggctctactggctagttttactcttttagggttaggaatcctaacataggctaaatagccccatgttcgaatataagacaagtttggttgtctt 4882  T
Q  230 ttcttcagaactttataagtagaaattttgttcttaaacttgagcactctgtttagcatatag 292  Q
    ||||||| || || ||| | ||||| ||||||||||  |||| | |||| |||||||| ||||    
T  4883 ttcttcaaaatttcatagggagaaactttgttcttagtcttgggtactccgtttagcacatag 4945  T

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Target: scaffold0067 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 31099 - 31009
Alignment:
Q  60 tctatgatcactttagcatttaggtcataaaatctatatatttcgctatttataacatacctaattaatacacattcatagactctactag 150  Q
    ||||||||||||||||| |||| ||||||||| ||||||  ||  |||||||   |||||| ||| ||||||||||||||| ||| |||||    
T  31099 tctatgatcactttagcttttatgtcataaaacctatatgctttactatttaaggcatacccaatgaatacacattcataggctcaactag 31009  T

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