View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_6 (Length: 726)
Name: NF0856_high_6
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 38 - 645
Target Start/End: Complemental strand, 497644 - 497037
Alignment:
| Q |
38 |
aaaagaaagagaatgaggaagaacacgagtacgagagttgtccaataattatgataaaattgttgtacatatatcatttcttttaaaaatatcgtctttc |
137 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
497644 |
aaaagaaagagaatgagtaagaacacgagtacgagagttgtccaataattatgataaagttgttgtacatatatcatttcttttaaaaataacgtcttcc |
497545 |
T |
|
| Q |
138 |
atttttcaaaaaattcccacttcattttggtcctttatcgatccacttacattcataataatatccatgtgacttatttatgtttaagattagttcatgt |
237 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
497544 |
atttttcaaaaaatttccacttcattttggtcctttatcgatccacttacattcataataatatccatgtgacctatttatgtttaagattggttcatgt |
497445 |
T |
|
| Q |
238 |
tatgtcttataatattatgttcaacaaatatcaatgacatgtcaaaactatagggccaaaaacaatataattttatttagaagattaaaatcaaaatttg |
337 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
497444 |
tatgtcttataatattttgttcaacaaatatcaatgacatgtcaaaactataggaccaaaaacaatacaattttttttagaagattaaaatcaaaattta |
497345 |
T |
|
| Q |
338 |
ttgtatttatagagacgaaaaacaatttgttaaacacaccaaatgtttgagcaaacgcgaactaacatttgaatggatacaaaactcagattggggggag |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
497344 |
ttgtatttatagagacgaaaaacaatttgttaaacacaccaaatgtttgagcaaacgcgaactaacatttgaatggatgcaaaactcagattggggggag |
497245 |
T |
|
| Q |
438 |
atggttgcgagtgttttaggtctaaaaacgcaatggcaaaagtgaaggaagatgggctacacagattttcttgcaatttcccttcgtcctttaacaattt |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
497244 |
atggttgcgagtgttttaggtctaaaaacgcaatggcaaaagtgaaggaagatgggctacacatattttcttgcaatctcccttcgtcctttaacaattt |
497145 |
T |
|
| Q |
538 |
tagcaacttggtcgttttctccctcgacgtttcattcactattctctccaatgtaacctaaggatccctgtccttaggcgattttggtggtgacgttgaa |
637 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
497144 |
tagcaacttcgtcgttttctccctcgacgtttcattcactattccctccaatgtaacctaaggatccctgtccttaggcgattttggtggtgctgttgaa |
497045 |
T |
|
| Q |
638 |
ctgattgt |
645 |
Q |
| |
|
|||||||| |
|
|
| T |
497044 |
ctgattgt |
497037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 638 - 716
Target Start/End: Complemental strand, 496494 - 496416
Alignment:
| Q |
638 |
ctgattgtaacctatgaaggttgctcattctgcctttcctccctcgcgctggaccccattctcttctcccatgtctctg |
716 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
496494 |
ctgattgtaacctatgaaggttgctcaatccgcctttcctccctcgcgctggaccccattctcttctcccatgtctctg |
496416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 6912681 - 6912627
Alignment:
| Q |
75 |
ttgtccaataattatgataaaattgttgtacatatatcatttcttttaaaaatat |
129 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||| |||||||||||||||||| |
|
|
| T |
6912681 |
ttgtccaaaaattatgataaaatggttgtacaaataacatttcttttaaaaatat |
6912627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 8805276 - 8805233
Alignment:
| Q |
73 |
agttgtccaataattatgataaaattgttgtacatatatcattt |
116 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
8805276 |
agttgtccaaaaattatcataaaatagttgtacatatatcattt |
8805233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 7630658 - 7630695
Alignment:
| Q |
323 |
taaaatcaaaatttgttgtatttatagagacgaaaaac |
360 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
7630658 |
taaaatcaaaatttgatatatttatagagacgaaaaac |
7630695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3109 times since January 2019
Visitors: 6169