View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_64 (Length: 383)

Name: NF0856_high_64
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_64
NF0856_high_64
[»] chr7 (5 HSPs)
chr7 (4-355)||(35354680-35355031)
chr7 (155-355)||(35380837-35381037)
chr7 (158-353)||(35370278-35370473)
chr7 (4-75)||(35379184-35379255)
chr7 (4-75)||(35369825-35369896)
[»] chr4 (4 HSPs)
chr4 (157-353)||(19684483-19684679)
chr4 (157-353)||(19630147-19630344)
chr4 (4-75)||(19630480-19630551)
chr4 (4-75)||(19684246-19684317)
[»] chr8 (2 HSPs)
chr8 (278-335)||(2251396-2251453)
chr8 (278-335)||(2256744-2256801)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 355
Target Start/End: Original strand, 35354680 - 35355031
Alignment:
Q  4 cattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaacnnnnnnnnnnnnnnnnnngcatgcttga 103  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||    
T  35354680 cattatctatactctcgttatcactctcatcaccattcttcaattgttactgagcctatcacttgtatgaactttttttctttcatttttgcatgcttga 35354779  T
Q  104 tttgtgagtgtccaaattttggtgtcaaaataacacaactttcttatgtattttgacagctgtgacacacccatttgcggagcatttgtcatattttaca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35354780 tttgtgagtgtccaaattttggtgtcaaaataacacaactttcttatgtattttgacagctgtgacacacccatttgcggagcatttgtcatattttaca 35354879  T
Q  204 ctttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  35354880 ctttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatatggctatgtctttttcattgatttcatgaacaacatgg 35354979  T
Q  304 gtcattgcaactttgagttctttcctaagaaactcctctcttactttcccat 355  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35354980 gtcattgcaactttgagttcattcctaagaaactcctctcttactttcccat 35355031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 155 - 355
Target Start/End: Original strand, 35380837 - 35381037
Alignment:
Q  155 tttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtg 254  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  35380837 tttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtg 35380936  T
Q  255 gctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccca 354  Q
    |||||| | | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35380937 gctgcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccca 35381036  T
Q  355 t 355  Q
    |    
T  35381037 t 35381037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 158 - 353
Target Start/End: Original strand, 35370278 - 35370473
Alignment:
Q  158 gacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggct 257  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35370278 gacagctgtggcacacccatttgccgagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct 35370377  T
Q  258 gcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccc 353  Q
    ||||||| ||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||    
T  35370378 gcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccc 35370473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 35379184 - 35379255
Alignment:
Q  4 cattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaac 75  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  35379184 cattatctatactctcgttatcattctcaccatcattcttcaattgtcactgagcctatcacttgtatgaac 35379255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 35369825 - 35369896
Alignment:
Q  4 cattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaac 75  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||||    
T  35369825 cattatctatactctcgttatcattctcaccatcattcttcaattgtcactgagcctgtcacttgtatgaac 35369896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 157 - 353
Target Start/End: Original strand, 19684483 - 19684679
Alignment:
Q  157 tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggc 256  Q
    ||||||| |||||||| |||||||| |||   ||| ||||||| |||||||||  ||||||||||||||||||||||||||| ||||||||   |||||     
T  19684483 tgacagcggtgacacatccatttgctgagatgttggcatatttcacactttttcttataccaatgttgacaacattgttcatgaaaaaatcgagtgtggt 19684582  T
Q  257 tgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccc 353  Q
    |||| | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  19684583 tgcattgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccc 19684679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 157 - 353
Target Start/End: Complemental strand, 19630344 - 19630147
Alignment:
Q  157 tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttga-caacattgttcatcaaaaaatcttctgtgg 255  Q
    |||||||||||| |||||||||||| |||   ||| ||||||| |||||||||  ||| ||||| |||| ||||| ||||| | |||||||| ||| | |    
T  19630344 tgacagctgtgatacacccatttgctgagatattggcatatttcacacttttttttatcccaatattgagcaacaatgttcgtaaaaaaatcgtctattg 19630245  T
Q  256 ctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccc 353  Q
    ||||  | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  19630244 ctgcggtgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccc 19630147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 19630551 - 19630480
Alignment:
Q  4 cattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaac 75  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  19630551 cattatctatactctcgttaccattctcatcatcattcttcaattgtcaccgagcctatcacttgtatgaac 19630480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 19684246 - 19684317
Alignment:
Q  4 cattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaac 75  Q
    ||||||||||| |||||||| |||||||| || |||||||||||||| ||||| ||||||||| ||||||||    
T  19684246 cattatctatattctcgttaccattctcaccatcattcttcaattgtcactgaacctatcactggtatgaac 19684317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 2251396 - 2251453
Alignment:
Q  278 ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa 335  Q
    |||||||||||||||||| ||  ||||||| || || ||||||||| |||||||||||    
T  2251396 ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa 2251453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 2256801 - 2256744
Alignment:
Q  278 ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa 335  Q
    |||||||||||||||||| ||  ||||||| || || ||||||||| |||||||||||    
T  2256801 ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa 2256744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3930 times since January 2019
Visitors: 6176