View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_7 (Length: 726)

Name: NF0856_high_7
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_7
NF0856_high_7
[»] chr8 (1 HSPs)
chr8 (36-670)||(27843816-27844457)


Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 36 - 670
Target Start/End: Original strand, 27843816 - 27844457
Alignment:
Q  36 ccaagttaaataaaaggaaatttccctgccttgcaattaatgaagcccgtcgcaacctctaagaaattttggttgacattaaacctaaacaaccgacnnn 135  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  27843816 ccaagttaaataaaaggaaatttccatgccttgcaattaatgaagcccgtcgcaacctctaagaaattttggttgacattaaacctaaacaaccgacttt 27843915  T
Q  136 nnnnggaaaaattaatctttaaaccggacatcaatttaaacgatttaaggagagccttcgttgacaacaaatactccatgcacgcctctgcaataaataa 235  Q
        ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  27843916 ttttggaaaaattaacctttaaaccgaacatcaatttaaatgatttaaggagagccttcgttgacaacaaattctccatgcacgcctctccaataaataa 27844015  T
Q  236 tgggtcatcttcatattgtagatggctcac-------caatacctttgagtcatgtatatgatacccataaaatatcccaactgcacttcaatatccaat 328  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  27844016 tgggtcatcttcatattgtagatggctcaccattcaccaatacctttgagtcatgtatctgatacccataaaatatcccaactgcaccacaatatccaat 27844115  T
Q  329 aaacccctgacttcttttccagacttccaccaataaaacaaaagggtgctaacagatcaccttgcataagcccgctactaattttcatctcttccatggg 428  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27844116 aaacccctgacctctcttccagacttccaccaataaaacaaaagggtactaacagatcaccttgcataagcccgctactaattttcatctcttccatggg 27844215  T
Q  429 aatcccattcgccaataccaacaaattatccgaaaatacagaagccctcatccaacctcttcatttttcattgaagttgaatctttaaagcatgtaatcc 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27844216 aatcccattcgccaataccaacaaattatccgaaaatacagaagccctcatccaacctcttcatttttcatcgaagttgaatctttaaagcatgtaatcc 27844315  T
Q  529 caaaaactccaacttaccaaatcgtaggctttctgaaattccaccgtagagatcatgcactcctttttagtgtctttgaaaggatcattctatttcatca 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27844316 caaaaactccaacttaccaaatcgtaggctttctgaaattccaccgtagagatcatgcactcctttttagtctctttgaaaggatcattctatttcatca 27844415  T
Q  629 atttcatttttgtatactcatcctcatggctgtttagaaata 670  Q
    ||||||||||||||||||||||||||| ||| | ||||||||    
T  27844416 atttcatttttgtatactcatcctcatagctatatagaaata 27844457  T

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