View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_73 (Length: 367)

Name: NF0856_high_73
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_73
NF0856_high_73
[»] chr5 (18 HSPs)
chr5 (19-356)||(26405269-26405605)
chr5 (11-262)||(8297583-8297839)
chr5 (28-256)||(26045693-26045924)
chr5 (19-224)||(14302165-14302373)
chr5 (12-226)||(13953962-13954178)
chr5 (24-148)||(33109926-33110050)
chr5 (28-98)||(7195031-7195101)
chr5 (29-159)||(10174898-10175030)
chr5 (12-98)||(30097613-30097700)
chr5 (24-98)||(5187223-5187297)
chr5 (58-98)||(7682834-7682874)
chr5 (24-168)||(33258615-33258753)
chr5 (25-99)||(7403664-7403737)
chr5 (33-159)||(21398054-21398183)
chr5 (45-98)||(39183951-39184004)
chr5 (42-98)||(4914245-4914301)
chr5 (60-96)||(8731182-8731218)
chr5 (28-76)||(37108102-37108150)
[»] chr7 (13 HSPs)
chr7 (24-260)||(24324524-24324761)
chr7 (107-263)||(8745267-8745426)
chr7 (12-270)||(3478459-3478716)
chr7 (12-237)||(1320935-1321161)
chr7 (45-98)||(22567877-22567930)
chr7 (12-119)||(16954749-16954856)
chr7 (55-162)||(23983420-23983528)
chr7 (45-119)||(28534276-28534349)
chr7 (26-168)||(33719174-33719319)
chr7 (27-98)||(6492859-6492931)
chr7 (108-263)||(6716547-6716704)
chr7 (12-170)||(42532973-42533134)
chr7 (12-93)||(16828814-16828895)
[»] chr2 (16 HSPs)
chr2 (12-262)||(7696077-7696328)
chr2 (12-263)||(10173293-10173544)
chr2 (50-159)||(12343037-12343146)
chr2 (12-263)||(37770364-37770609)
chr2 (12-133)||(4974990-4975112)
chr2 (12-133)||(4992898-4993020)
chr2 (28-263)||(34230315-34230552)
chr2 (70-161)||(1269696-1269787)
chr2 (135-263)||(16952223-16952349)
chr2 (135-263)||(17022888-17023014)
chr2 (135-263)||(17060194-17060320)
chr2 (133-165)||(7874502-7874534)
chr2 (27-87)||(13337542-13337602)
chr2 (26-84)||(29139678-29139736)
chr2 (45-94)||(13699051-13699100)
chr2 (60-96)||(25504689-25504725)
[»] chr4 (14 HSPs)
chr4 (12-273)||(41117682-41117944)
chr4 (28-263)||(16832750-16832988)
chr4 (13-263)||(38636948-38637200)
chr4 (60-262)||(49528187-49528390)
chr4 (65-168)||(22810928-22811032)
chr4 (49-256)||(25753293-25753503)
chr4 (28-159)||(49747746-49747879)
chr4 (71-263)||(48098447-48098641)
chr4 (12-136)||(19311080-19311204)
chr4 (51-258)||(19673219-19673429)
chr4 (42-135)||(52009083-52009175)
chr4 (54-263)||(19814975-19815187)
chr4 (53-98)||(43373862-43373907)
chr4 (133-165)||(35341177-35341209)
[»] chr3 (18 HSPs)
chr3 (12-216)||(50518803-50519007)
chr3 (100-262)||(37998964-37999125)
chr3 (12-256)||(14194054-14194297)
chr3 (44-261)||(37123497-37123716)
chr3 (108-263)||(14879550-14879708)
chr3 (19-263)||(25647800-25648043)
chr3 (25-98)||(48893080-48893153)
chr3 (80-166)||(7105052-7105140)
chr3 (12-159)||(4170963-4171111)
chr3 (26-136)||(12086484-12086595)
chr3 (45-161)||(25594296-25594412)
chr3 (19-157)||(28937443-28937574)
chr3 (141-263)||(39021122-39021244)
chr3 (53-99)||(1652646-1652692)
chr3 (45-95)||(27399228-27399278)
chr3 (12-167)||(33143666-33143822)
chr3 (12-73)||(41039463-41039524)
chr3 (55-95)||(14280305-14280345)
[»] scaffold0050 (1 HSPs)
scaffold0050 (12-259)||(36827-37074)
[»] chr1 (20 HSPs)
chr1 (19-263)||(31290742-31290986)
chr1 (12-159)||(32882584-32882734)
chr1 (12-263)||(34774985-34775239)
chr1 (13-219)||(46768340-46768542)
chr1 (31-155)||(10785194-10785319)
chr1 (42-163)||(38548821-38548942)
chr1 (12-159)||(16148993-16149143)
chr1 (25-96)||(11439747-11439817)
chr1 (113-225)||(9313121-9313236)
chr1 (69-159)||(41126261-41126353)
chr1 (198-263)||(6583118-6583183)
chr1 (19-98)||(6582972-6583052)
chr1 (45-161)||(38544503-38544619)
chr1 (199-263)||(16147672-16147736)
chr1 (59-118)||(16577520-16577579)
chr1 (12-168)||(27102401-27102549)
chr1 (108-206)||(4430862-4430962)
chr1 (12-53)||(9313054-9313095)
chr1 (12-96)||(32863260-32863345)
chr1 (12-119)||(46603623-46603728)
[»] scaffold0063 (1 HSPs)
scaffold0063 (12-241)||(58263-58495)
[»] chr8 (10 HSPs)
chr8 (28-226)||(10248296-10248497)
chr8 (19-159)||(17656457-17656600)
chr8 (27-168)||(12197804-12197948)
chr8 (27-168)||(12442232-12442376)
chr8 (28-170)||(8862352-8862499)
chr8 (28-159)||(22325826-22325957)
chr8 (166-261)||(17656872-17656967)
chr8 (200-258)||(8862505-8862563)
chr8 (45-98)||(30235879-30235932)
chr8 (55-91)||(25184917-25184953)
[»] scaffold0119 (1 HSPs)
scaffold0119 (70-161)||(41915-42006)
[»] chr6 (5 HSPs)
chr6 (13-104)||(15120317-15120409)
chr6 (108-241)||(3880406-3880543)
chr6 (75-263)||(20701578-20701770)
chr6 (57-97)||(16180675-16180715)
chr6 (27-98)||(5607704-5607775)
[»] scaffold1384 (1 HSPs)
scaffold1384 (12-159)||(1365-1519)
[»] scaffold0200 (1 HSPs)
scaffold0200 (70-161)||(19596-19687)
[»] scaffold1613 (1 HSPs)
scaffold1613 (45-161)||(782-898)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 26405269 - 26405605
Alignment:
Q  19 gaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccact 118  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||| |||    
T  26405269 gaacacccgaaaataaacaccttaaaaacacccctgaggacaacaaccaccaaaatacacgtcaccacctaaaacagacttcttcatggaaatgac-act 26405367  T
Q  119 gttaaaaccatatccaaccacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacct 218  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||| ||  ||||||||||||||||   |||||||||    
T  26405368 gttaaaaccatatccaatcacccatcgtcactactcacctcaaagaaaaacactcatcaaaattaaactcctcgtcctgaacaccaaagtcgagccacct 26405467  T
Q  219 ccgaaaagctcatatccgaaagaccaattagcttccaccacctctggatctctgaaggagcagtttattatactttgtgacaaataattctcaatctatt 318  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26405468 ccgaaaagctcatatccgaaagaccaatcagcttccaccacctctcgatctccgaaggagcagtttattatactttgtgacaaataattctcaatctatt 26405567  T
Q  319 ttaggttcaattttagttagacatgtacatcaataaat 356  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26405568 ttaggttcaattttagttagacatgtacatcaataaat 26405605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 8297839 - 8297583
Alignment:
Q  11 cataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    ||||||| |||| || ||||||| ||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||  |||| | |||    
T  8297839 cataggcggaacacctgaaaatacacaccctaaaaacacccctgaggataacatccaccaaaatacacatcaccacctaaaacacactccttcaagaaaa 8297740  T
Q  111 cgaccactgttaaaaccatatccaaccacccatcgtcactactca-----ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaa 205  Q
     ||||| ||| ||||| || |||||||||| ||||||||||||||     ||||||||||||||| || ||||||||||| || || || ||||||||||    
T  8297739 agaccaatgtaaaaacgatttccaaccacctatcgtcactactcactcacccccaaagaaaaacacccctcaaaattaaactccccatcatgaacaccaa 8297640  T
Q  206 aactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctc 262  Q
    ||| ||||||| |||||||||||| |||||||||||||| | | |||||||||||||    
T  8297639 aaccgagccacatccgaaaagctcctatccgaaagaccattcaacttccaccacctc 8297583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 256
Target Start/End: Original strand, 26045693 - 26045924
Alignment:
Q  28 aaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaac 126  Q
    |||||||||||| |||||| | ||||| ||||||||| |||||||||| ||| |||||||||||||||||||| |||||| ||| |||||| || |||||    
T  26045693 aaaataaacaccctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaac 26045792  T
Q  127 catatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaa 224  Q
     | |||||||  | |||||||||||||||||||||||||||||||| || ||||||||||| || |  |||| |||||||||  |||| |||||||||||    
T  26045793 gaaatccaacacctcccatcgtcactactcaccccaaagaaaaacacccctcaaaattaaactctcaatcctaaacaccaaagttgagtcacctccgaaa 26045892  T
Q  225 agctcatatccgaaagaccaattagcttccac 256  Q
    |||||||||| |||||| |||| |||||||||    
T  26045893 agctcatatctgaaagatcaatcagcttccac 26045924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 14302165 - 14302373
Alignment:
Q  19 gaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccact 118  Q
    |||| ||| |||||||| | | ||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||| |  |||  | ||||||||| |    
T  14302165 gaacacccaaaaataaaaatcctaaaaacacccctgatgacaacacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaat 14302264  T
Q  119 gttaaaaccatatcca--accacccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagcca 215  Q
    || ||||| |||||||  ||||||  ||||||||||||| ||||||||||||| | || ||||||||||| || |  |||||||||||||| ||||||||    
T  14302265 gtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaatacccctcaaaattaaactcccactcctgaacaccaaagctgagcca 14302364  T
Q  216 cctccgaaa 224  Q
      |||||||    
T  14302365 tatccgaaa 14302373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 13953962 - 13954178
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaac-acccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    |||||| |||| || ||||||||||||||||||||  |||| | ||||||||  |||||||||||||  ||| | |||||||||||||| |||||| | |    
T  13953962 ataggcggaacacctgaaaataaacaccttaaaaaatacccttgaggacaactcccaccaaaatacatgtcatctcctaaaacagactttttcatgaaga 13954061  T
Q  111 cgaccactgttaaaaccatatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaac 208  Q
    |||| ||||| ||||| |||||| ||  ||||||||||||| |||| |||| ||   ||||| || || |||||||| || | ||||| ||| ||||| |    
T  13954062 cgactactgtaaaaacaatatcccacatcacccatcgtcacaactctcccccaa-cgaaacacccctctaaattaaactcccagtcctcaacgccaaagc 13954160  T
Q  209 tgagccacctccgaaaag 226  Q
    |||||||| |||||||||    
T  13954161 tgagccacatccgaaaag 13954178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 33109926 - 33110050
Alignment:
Q  24 cccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 123  Q
    ||||||||||||||| ||||||||||||   | ||||||| |||||||||||||| ||| ||||||||||| ||   |||| | ||||||||||||| ||    
T  33109926 cccgaaaataaacactttaaaaacaccct--atgacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaa 33110023  T
Q  124 aaccatatcca--accacccatcgtca 148  Q
    ||| |||||||  ||||||||||||||    
T  33110024 aacgatatccaataccacccatcgtca 33110050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 7195031 - 7195101
Alignment:
Q  28 aaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    |||||||||||| |||||||||| ||  |||||||| |||||||||||||| |||||||||||||||||||    
T  7195031 aaaataaacaccctaaaaacaccgctgcggacaacacccaccaaaatacacgtcaccacctaaaacagact 7195101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 10175030 - 10174898
Alignment:
Q  29 aaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaacca 128  Q
    ||||||||| | |||||||||| |  ||||||||| |||||||| ||||| | |||||||||||||||||  |||    |||||||||| || ||||| |    
T  10175030 aaataaacatcctaaaaacacctccgaggacaacacccaccaaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacga 10174931  T
Q  129 tatccaaccacccatc--gtcactactcacccc 159  Q
    ||||||||||||||||   ||||||||||||||    
T  10174930 tatccaaccacccatcatatcactactcacccc 10174898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 30097700 - 30097613
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    |||||| |||| |||||||||||||||| |||||| || || | | ||||||| |||||||||||||| |||||||||||||||||||    
T  30097700 ataggcggaacacccgaaaataaacaccctaaaaaacatccatgatgacaacacccaccaaaatacacgtcaccacctaaaacagact 30097613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 5187297 - 5187223
Alignment:
Q  24 cccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    |||||||||||||||| ||||| ||| | | |||| |||| ||||| || |||||||||||||||||| ||||||    
T  5187297 cccgaaaataaacaccataaaagcactcatgaggataacatccacccaagtacacatcaccacctaaaccagact 5187223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 7682874 - 7682834
Alignment:
Q  58 acaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  7682874 acaacacccaccaaaatacacatcaccacctaaaatagact 7682834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 33258615 - 33258753
Alignment:
Q  24 cccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 123  Q
    |||||||||||||||| |||||||| ||| ||| |||||| ||| ||||||        ||||||||||||||  | |||| | || |||||||||| ||    
T  33258615 cccgaaaataaacaccataaaaacatcccaaag-acaacacccatcaaaat--------ccacctaaaacagatctcttcacgaaagcgaccactgtaaa 33258705  T
Q  124 aaccatatcca--accacccatcgtcactactcacccc-aaagaaaaa 168  Q
    ||| |||||||  |||| |||||| ||||||||||||| |||||||||    
T  33258706 aacgatatccaataccatccatcgccactactcacccctaaagaaaaa 33258753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 7403737 - 7403664
Alignment:
Q  25 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagactt 99  Q
    ||||||||||||||| |||||| |||| | | ||||||| |||||||||| ||| |||||||| |||||| ||||    
T  7403737 ccgaaaataaacaccctaaaaa-acccatgaagacaacacccaccaaaattcacgtcaccaccgaaaacaaactt 7403664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 21398054 - 21398183
Alignment:
Q  33 aaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatat 131  Q
    ||||||||||||| |||||||| |||||||||   || ||||||||| |||||| |||||||||||   |||| | |||| |||  ||| ||||| ||||    
T  21398054 aaacaccttaaaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatat 21398153  T
Q  132 cc--aaccacccatcgtcactactcacccc 159  Q
    ||   |||||||||| ||| ||||||||||    
T  21398154 cccgcaccacccatcatcagtactcacccc 21398183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 39183951 - 39184004
Alignment:
Q  45 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    ||||||| | ||||||||| |||| |||||| | ||||||||||||||||||||    
T  39183951 aacacccttgaggacaacacccactaaaataaagatcaccacctaaaacagact 39184004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 4914245 - 4914301
Alignment:
Q  42 aaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    |||||||| ||| ||||  ||| |||||||||||||| |||||||||||| ||||||    
T  4914245 aaaaacactcctgaggattacacccaccaaaatacacttcaccacctaaatcagact 4914301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 8731218 - 8731182
Alignment:
Q  60 aacagccaccaaaatacacatcaccacctaaaacaga 96  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  8731218 aacacccaccaaaataaacatcaccacctaaaacaga 8731182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 37108150 - 37108102
Alignment:
Q  28 aaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatac 76  Q
    |||||||||||| ||||||||||| | |||| |||| ||||||||||||    
T  37108150 aaaataaacaccctaaaaacacccatgaggataacacccaccaaaatac 37108102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 24 - 260
Target Start/End: Original strand, 24324524 - 24324761
Alignment:
Q  24 cccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa-cgaccactgtta 122  Q
    |||||||||||||||  ||||||||||| | |||||||||  ||||||||||||| ||||||| |||||||||||  |||| | ||| |||||| ||| |    
T  24324524 cccgaaaataaacactctaaaaacacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaa 24324623  T
Q  123 aaaccatatccaaccacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccg 221  Q
     ||| ||||||||||||| |||||||||||||||||| ||||||||||| || ||||||| ||| || ||||||||||||||||| |||||||||  |||    
T  24324624 gaacgatatccaaccacc-atcgtcactactcacccctaaagaaaaacacccctcaaaataaaactctccgtcctgaacaccaaagctgagccacagccg 24324722  T
Q  222 aaaagctcatatccgaaagaccaattagcttccaccacc 260  Q
    |||||||| || |||||||| || | |||||||||||||    
T  24324723 aaaagctcctaaccgaaagatcattcagcttccaccacc 24324761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 107 - 263
Target Start/End: Complemental strand, 8745426 - 8745267
Alignment:
Q  107 gaaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacacc 203  Q
    |||||||||| ||  ||||| |||||||||  || || ||||||||||||||||| ||||||||||| || ||||||||||| || | ||| ||||||||    
T  8745426 gaaacgaccaatgaaaaaacaatatccaacaccatccttcgtcactactcacccccaaagaaaaacacccctcaaaattaaactcccagtcttgaacacc 8745327  T
Q  204 aaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    ||| ||||||||| |||||||||||| |||| |||||| ||   ||||||||| ||||||    
T  8745326 aaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctct 8745267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 3478716 - 3478459
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    |||||| |||| |||||||||||||||| ||||| |||  ||  || |||||| ||||||||| |||  |||||| || |||||||| | |||| | | |    
T  3478716 ataggcggaacacccgaaaataaacaccctaaaagacaatccagagcacaacatccaccaaaaaacaagtcaccaactcaaacagacgtcttcacgaata 3478617  T
Q  111 cgaccactgttaaaaccatatcca--accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaac 208  Q
    |||| ||||| ||| | |||||||  |||| || |||||||||||||||||||||||   ||  | ||||||||||| || | ||||| ||||||||| |    
T  3478616 cgac-actgtaaaagcgatatccatcaccaaccgtcgtcactactcaccccaaagaa---cactcctcaaaattaaactcccagtcctcaacaccaaagc 3478521  T
Q  209 tgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctctggatctc 270  Q
    | ||||| ||| |||||| ||| |||||||||| || | ||||||| |||||||| ||||||    
T  3478520 ttagccaactcagaaaagttcacatccgaaagatcattcagcttccgccacctctcgatctc 3478459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 1321161 - 1320935
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacaga-cttattcatggaaa 110  Q
    |||||| |||| |||||||||||||||| ||||||| ||| | | |||| || |||||||||||||||||||||||||||||||| |   |||| | ||     
T  1321161 ataggcggaactcccgaaaataaacaccctaaaaac-cccttgaagacaccatccaccaaaatacacatcaccacctaaaacagacccctttcacgaaag 1321063  T
Q  111 cgaccactgttaaaaccatatcca--accacccatcgtcactactca--ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaa 206  Q
    | |||||||| ||||| ||||| |  ||||| |||||||||||||||  ||||||||||||||  || |||||| |||| || | ||| |||| ||||||    
T  1321062 caaccactgtaaaaacgatatctaataccactcatcgtcactactcaccccccaaagaaaaac--ccctcaaaactaaactccctgtcatgaa-accaaa 1320966  T
Q  207 actgagccacctccgaaaagctcatatccga 237  Q
      |||||||| || |||||| || |||||||    
T  1320965 gttgagccacatctgaaaagatcttatccga 1320935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 22567877 - 22567930
Alignment:
Q  45 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  22567877 aacacccctagggacaacatccaccaaaatacacatcaccacctaaaacagact 22567930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 16954856 - 16954749
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    |||||| ||||  ||||||||||||||  ||||||||||||| | || |||| |||| ||||||||| |||||||||||||||||| | |||| | ||||    
T  16954856 ataggcggaacatccgaaaataaacacgctaaaaacacccctgaagaaaacaaccacaaaaatacacgtcaccacctaaaacagacatcttcaagaaaac 16954757  T
Q  112 gaccactg 119  Q
     |||||||    
T  16954756 aaccactg 16954749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 23983528 - 23983420
Alignment:
Q  55 aggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc--aaccacccatcgtcactac 152  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||| ||||| | |||| |||||||  ||||| |||| |  ||| ||||||| |||||||    
T  23983528 aggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaacaaccactg-aaaaacgatatacataactacccatcatcactac 23983430  T
Q  153 tcaccccaaa 162  Q
    ||||||||||    
T  23983429 tcaccccaaa 23983420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 28534276 - 28534349
Alignment:
Q  45 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactg 119  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||  ||||  |||||||||||||    
T  28534276 aacacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttca-cgaaacgaccactg 28534349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 33719319 - 33719174
Alignment:
Q  26 cgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattca-tggaaacgaccactgttaaa 124  Q
    ||||| |||||||| ||||||||| | | ||||||||| ||||||||||||  |||||| |||||||| ||||  ||||    |||||||| |||| |||    
T  33719319 cgaaagtaaacaccctaaaaacactcatgaggacaacacccaccaaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaa 33719220  T
Q  125 accatatcca--accacccatcgtcactactcaccccaaagaaaaa 168  Q
    |  |||||||  || || ||||||||||||||||||||||||||||    
T  33719219 atgatatccaacactactcatcgtcactactcaccccaaagaaaaa 33719174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 6492859 - 6492931
Alignment:
Q  27 gaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    ||||||||||||| |||||| ||||  | ||||||||| |||||||||| ||| |||||||||||||||||||    
T  6492859 gaaaataaacaccataaaaaacacctatgaggacaacatccaccaaaattcacgtcaccacctaaaacagact 6492931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 263
Target Start/End: Original strand, 6716547 - 6716704
Alignment:
Q  108 aaacgaccactgttaaaaccatatc-ca-accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaa 205  Q
    ||||||||||||| |||||  |||| || ||||||||| ||||||||||||||| ||  ||| || ||  |||||||||| || |  |||| ||||||||    
T  6716547 aaacgaccactgtaaaaacggtatctcacaccacccattgtcactactcacccccaacgaaa-caccccacaaaattaaactcccattcctcaacaccaa 6716645  T
Q  206 aactgagccacctccgaaaagctcatatccgaaa-gaccaattagcttccaccacctct 263  Q
    | ||||||||| |||| |||  || ||||||||| || |||| ||||||||||||||||    
T  6716646 agctgagccacatccggaaaaatcttatccgaaaagatcaatcagcttccaccacctct 6716704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 42532973 - 42533134
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    |||||| |||| || | ||||||||||| ||||||| ||| | | ||||||| |||| |||| | || ||| ||||||||||| || |||||| | || |    
T  42532973 ataggcggaacacctggaaataaacaccctaaaaactcccttgatgacaacacccacaaaaaaatacgtcatcacctaaaacatacctattcacgaaagc 42533072  T
Q  112 gaccactgttaaaaccatatcca--accacccatcgtcactactc-accccaaagaaaaaca 170  Q
     |||| ||| ||||  | |||||  ||||||||||||||||||||  |||||||||||||||    
T  42533073 aaccattgtaaaaatgaaatccaataccacccatcgtcactactcgcccccaaagaaaaaca 42533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 16828814 - 16828895
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaac 93  Q
    |||||| |||| |||||||||||||| | || ||| |||||| | || |||| |||||||||||||||||| || |||||||    
T  16828814 ataggcggaacacccgaaaataaacatcctagaaatacccctgaagaaaacaaccaccaaaatacacatcatcatctaaaac 16828895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 7696328 - 7696077
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    |||||| |||| ||| |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| | |||  |||| | ||||    
T  7696328 ataggcggaacacccaaaaataaacaccttaaaaacacccccgaggacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaac 7696229  T
Q  112 gaccactgttaaaaccatatccaaccacccatcgtcactactcac-cccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactg 210  Q
    ||||| ||| ||||  |||| ||||||| |||||||||||||||| |||  ||||||||| || | ||||| ||| ||   |||||||||||||||  ||    
T  7696228 gaccaatgtaaaaatgatattcaaccactcatcgtcactactcactcccttagaaaaacacccctaaaaataaaactcctggtcctgaacaccaaagttg 7696129  T
Q  211 agccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctc 262  Q
    |||||| |||  ||| ||| ||||||||||| || | |||||||||||||||    
T  7696128 agccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctc 7696077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 10173293 - 10173544
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    |||||| |||| || ||||||||||||| ||||| | ||| || ||||||| | ||| |||||||||  ||||  |||||||||||| | |||||| |||    
T  10173293 ataggcggaacacctgaaaataaacaccctaaaagatacctctgaggacaatacccatcaaaatacatgtcacggcctaaaacagacgtcttcatgaaaa 10173392  T
Q  111 cgaccactgttaaaaccatatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaac 208  Q
    |||| ||||| ||||| |||| ||||  ||| ||||||||||||||||||||||||| |   ||| ||||||||||| || | ||||| ||||||||| |    
T  10173393 cgactactgtaaaaacgatatacaacaccactcatcgtcactactcaccccaaagaata--ctcc-tcaaaattaaactctcagtcctcaacaccaaagc 10173489  T
Q  209 tgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    |||||||| |||||||||||||||| | ||||| || | | ||||||||||||||    
T  10173490 tgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctct 10173544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 12343146 - 12343037
Alignment:
Q  50 ccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcac 149  Q
    |||| ||||||||| ||| |||||||||| |||||||||||||||||||  |||| | |||||||| |||| ||||| |||||||||||| |||||||||    
T  12343146 ccctgaggacaacatccatcaaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaaccactcatcgtcac 12343047  T
Q  150 tactcacccc 159  Q
    ||||||||||    
T  12343046 tactcacccc 12343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 37770364 - 37770609
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    |||||| |||| |||||||||||||||| ||||||||||  | |||| | || |||||||||| ||| |||||||||||||||||||  |||| | ||||    
T  37770364 ataggcggaacacccgaaaataaacaccctaaaaacacca-tgaggataccacccaccaaaatccacgtcaccacctaaaacagactccttcacgaaaac 37770462  T
Q  112 gaccactgttaaaaccatatccaaccacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactg 210  Q
     |||||| |  || |||      ||||||| |||||||||||| |||| |||||||||   || ||||||||||| || | | ||||||||||||| | |    
T  37770463 caccactat--aatccaac----accacccgtcgtcactactcgcccccaaagaaaaaaccccctcaaaattaaactcacagacctgaacaccaaagccg 37770556  T
Q  211 agccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    ||||||||| |||||||||||||| |||||| || | |||||||| |||||||    
T  37770557 agccacctcagaaaagctcatatctgaaagatcattcagcttccaacacctct 37770609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 4975112 - 4974990
Alignment:
Q  12 ataggcagaacccccgaaaataaacacctt-aaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    |||||| |||| |||||||||||||||| | ||||||| || | |||| |||| |||||||| |||||| ||||||||||||||||||| |||| | |||    
T  4975112 ataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaa 4975013  T
Q  111 cgaccactgttaaaaccatatcc 133  Q
    |||||||||| ||||| ||||||    
T  4975012 cgaccactgtaaaaacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 4993020 - 4992898
Alignment:
Q  12 ataggcagaacccccgaaaataaacacctt-aaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    |||||| |||| |||||||||||||||| | ||||||| || | |||| |||| |||||||| |||||| ||||||||||||||||||| |||| | |||    
T  4993020 ataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaa 4992921  T
Q  111 cgaccactgttaaaaccatatcc 133  Q
    |||||||||| ||||| ||||||    
T  4992920 cgaccactgtaaaaacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 263
Target Start/End: Complemental strand, 34230552 - 34230315
Alignment:
Q  28 aaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaacc 127  Q
    |||||||||| | ||||||||||||| || |||||| |||||||||||||| |||||| || |||||||||  | || | ||||||||||| | |||||     
T  34230552 aaaataaacatcgtaaaaacaccccttagaacaacatccaccaaaatacacgtcaccatct-aaacagactcttccacgaaaacgaccactataaaaacg 34230454  T
Q  128 atatccaac--cacccatcgtcactactcacc-ccaaag-aaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaa 223  Q
    |||||||||  ||||| |||  |||||||||| |||||| ||||||| |||| ||||  ||| |  | ||||| |||||||||  |||||||| || |||    
T  34230453 atatccaacaacacccgtcgcaactactcacctccaaagaaaaaacacccataaaaaaaaaaat-tcagtcctaaacaccaaagttgagccacatctgaa 34230355  T
Q  224 aagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    |||||| |||  |||||| || | ||||||||||||||||    
T  34230354 aagctcttatttgaaagatcattcagcttccaccacctct 34230315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 1269787 - 1269696
Alignment:
Q  70 aaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaa 161  Q
    ||||||||||||||||||||||||| | |  |||  |||||||||| || | ||||| ||||||||||||||||||||||||||| ||||||    
T  1269787 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaaccacccatcgtcactactcgccccaa 1269696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 16952223 - 16952349
Alignment:
Q  135 accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatc 234  Q
    ||||| ||||||||||||||||||| ||  | |||| || || |||| ||| || | ||||| |||||||||  ||| |||| |||||||||||| ||||    
T  16952223 accactcatcgtcactactcacccccaa--agaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatc 16952320  T
Q  235 cgaaagaccaattagcttccaccacctct 263  Q
    ||||||| |  ||||||||||||||||||    
T  16952321 cgaaagatcgtttagcttccaccacctct 16952349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 17022888 - 17023014
Alignment:
Q  135 accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatc 234  Q
    ||||| ||||||||||||||||||| ||  | |||| || || |||| ||| || | ||||| |||||||||  ||| |||| |||||||||||| ||||    
T  17022888 accactcatcgtcactactcacccccaa--agaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatc 17022985  T
Q  235 cgaaagaccaattagcttccaccacctct 263  Q
    ||||||| |  ||||||||||||||||||    
T  17022986 cgaaagatcgtttagcttccaccacctct 17023014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 17060194 - 17060320
Alignment:
Q  135 accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatc 234  Q
    ||||| ||||||||||||||||||| ||  | |||| || || |||| ||| || | ||||| |||||||||  ||| |||| |||||||||||| ||||    
T  17060194 accactcatcgtcactactcacccccaa--agaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatc 17060291  T
Q  235 cgaaagaccaattagcttccaccacctct 263  Q
    ||||||| |  ||||||||||||||||||    
T  17060292 cgaaagatcgtttagcttccaccacctct 17060320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 7874534 - 7874502
Alignment:
Q  133 caaccacccatcgtcactactcaccccaaagaa 165  Q
    |||||||||||||||||||||||||||||||||    
T  7874534 caaccacccatcgtcactactcaccccaaagaa 7874502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 13337602 - 13337542
Alignment:
Q  27 gaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacc 87  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||  || |||||||| |||||    
T  13337602 gaaaataaacaccctaaaaacacccctgaggacaacacccacttaattacacatcgccacc 13337542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 29139678 - 29139736
Alignment:
Q  26 cgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcacc 84  Q
    |||||||||| |||||||||||||| || |  |||||| |||||||||||||| |||||    
T  29139678 cgaaaataaataccttaaaaacacctctgaaaacaacatccaccaaaatacacgtcacc 29139736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 13699051 - 13699100
Alignment:
Q  45 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaaca 94  Q
    ||||||||| | || |||| ||||||||||| ||||||||||||||||||    
T  13699051 aacacccctgaagataacacccaccaaaataaacatcaccacctaaaaca 13699100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 25504689 - 25504725
Alignment:
Q  60 aacagccaccaaaatacacatcaccacctaaaacaga 96  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  25504689 aacacccaccaaaataaacatcaccacctaaaacaga 25504725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 41117682 - 41117944
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaa-aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    |||||| |||| |||||||||||||||| |||| ||||||  | ||||||||| ||||||||||||| ||||||||||| |||||||| || || | |||    
T  41117682 ataggcggaacacccgaaaataaacaccctaaataacacca-tgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcacgaaaa 41117780  T
Q  111 cgaccactgttaaaaccatatccaaccacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaact 209  Q
    | |||  ||| ||||| ||||||||||||||||||||| ||||||||||   ||||||||| || ||| ||| ||| || |  || ||||||||||| ||    
T  41117781 caaccgttgtaaaaacgatatccaaccacccatcgtcattactcacccctttagaaaaacacccctcagaataaaactcccgatcatgaacaccaaacct 41117880  T
Q  210 gagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctctggatctctga 273  Q
    |||||||||||| ||||||| ||| ||||||| || | |||||||||||||||| || ||||||    
T  41117881 gagccacctccgcaaagctcctattcgaaagatcattcagcttccaccacctctcgacctctga 41117944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 28 - 263
Target Start/End: Original strand, 16832750 - 16832988
Alignment:
Q  28 aaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa-cgaccactgttaaaac 126  Q
    |||||||||||| ||||||| | ||| ||||||||| |||||||| || || ||||||||||||||| | |  | || | ||| ||||| |||| ||||     
T  16832750 aaaataaacaccctaaaaactctcctgaggacaacacccaccaaa-taaacgtcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaa 16832848  T
Q  127 catatccaac--cacccatcgtcactactcaccccaaagaaaaa-catccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaa 223  Q
     |||||||||  ||||| |||||||||||||||||||||||||| || || ||||||||||| || | ||| |||||||||||  |||||||| ||||||    
T  16832849 gatatccaacaccacccgtcgtcactactcaccccaaagaaaaaacacccctcaaaattaaactcacagtcttgaacaccaaagttgagccacatccgaa 16832948  T
Q  224 aagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    |||||||||||| ||||| || | |||||| | |||||||    
T  16832949 aagctcatatcccaaagatcattcagcttcaatcacctct 16832988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 38636948 - 38637200
Alignment:
Q  13 taggcagaacccccgaaaataaacaccttaaa-aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    ||||| |||| || |||||||||||||||||| || |||||  ||||||||| |||| ||||||||  ||||||||||||||| |||  |||| | ||||    
T  38636948 taggcggaacacctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaac 38637047  T
Q  112 gaccactgttaaaaccatatccaaccacccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactg 210  Q
     ||| |||| ||||  |||||||||||||||||||||||||||| ||||  ||||||||| || | | | | ||| || |  || |||||||||||  ||    
T  38637048 aaccgctgtaaaaatgatatccaaccacccatcgtcactactcacccccttagaaaaacaccccttatactaaaactcccaatcttgaacaccaaagttg 38637147  T
Q  211 agccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    | || |||| | ||||||| |||| |||||| || | ||||||||||||||||    
T  38637148 aaccgcctcggcaaagctcttatctgaaagatcattcagcttccaccacctct 38637200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 60 - 262
Target Start/End: Complemental strand, 49528390 - 49528187
Alignment:
Q  60 aacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactca-ccc 158  Q
    |||| ||||||||| |||| ||| ||||||||| |||||  ||||||  | |||||||| ||||||| |||| |||||| ||||| |||||||||| |||    
T  49528390 aacacccaccaaaaaacacgtcatcacctaaaatagactccttcatgacaccgaccactattaaaacgatattcaaccatccatcttcactactcacccc 49528291  T
Q  159 caaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccacca 258  Q
    |  ||||||||| || ||||||| ||| || | ||| ||||||||||| |||| |||| |||| ||||||  ||||||||||| || | | |||||||||    
T  49528290 cttagaaaaacacccctcaaaataaaactctcagtcttgaacaccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccacca 49528191  T
Q  259 cctc 262  Q
    ||||    
T  49528190 cctc 49528187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 22810928 - 22811032
Alignment:
Q  65 ccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactca-ccccaaag 163  Q
    |||||||||||||| ||||| |||||||||||||  |||| | || |||||||||| ||||| |||||| |||| |||||||||||||||| ||||||||    
T  22810928 ccaccaaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcctaccatccatcgtcactactcacccccaaag 22811027  T
Q  164 aaaaa 168  Q
    |||||    
T  22811028 aaaaa 22811032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 256
Target Start/End: Complemental strand, 25753503 - 25753293
Alignment:
Q  49 cccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac--cacccatcgt 146  Q
    ||||| ||||||||| |||||||||||||  ||| ||||||||||| |||  |||| | ||| | ||||||| ||| |  ||||||||  ||  ||||||    
T  25753503 cccctgaggacaacacccaccaaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaacatcattcatcgt 25753404  T
Q  147 cactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaa 245  Q
    ||||||||||||| ||||||||||| || ||||||||||| |  | |||||||||| ||||  ||| |||| ||| |||||||  | ||||||||| ||     
T  25753403 cactactcacccccaaagaaaaacacccctcaaaattaaactttcagtcctgaacatcaaagttgaaccacatccaaaaagcttctctccgaaagatcat 25753304  T
Q  246 ttagcttccac 256  Q
    | |||||||||    
T  25753303 tcagcttccac 25753293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 49747879 - 49747746
Alignment:
Q  28 aaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaac 126  Q
    |||||||||||| |||||| |||| || ||||||||| |||||||||| ||  |||||||||||||||||||  |||| | ||||||||| ||| |||||    
T  49747879 aaaataaacaccataaaaaacacctctgaggacaacacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaac 49747780  T
Q  127 catatcca--accacccatcgtcactactcacccc 159  Q
     | |||||  ||| ||||| |||||||||||||||    
T  49747779 ga-atccaacaccgcccattgtcactactcacccc 49747746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 263
Target Start/End: Complemental strand, 48098641 - 48098447
Alignment:
Q  71 aaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcca--accacccatcgtcactactcacccc-aaagaaaa 167  Q
    |||||||| |||||||||||||||  |||  |||   ||||||||||||| ||||| |||||||  || |||| ||||||||||||||||| ||||||||    
T  48098641 aaatacacgtcaccacctaaaacactctt--tcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaa 48098544  T
Q  168 -acatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
     ||| || | |||| |||| || | ||| | |||||||||  |||||||| |||||||||||| |||| |||||| |  | | ||||||||||||||    
T  48098543 tacacccctaaaaaataaactcccagtcttaaacaccaaagttgagccacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctct 48098447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 19311080 - 19311204
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    |||||| ||||  |||||| |||||||| ||||||| |||||  ||| |||| |||||||||||||| ||||||||  ||||||| |  |||| | ||||    
T  19311080 ataggcggaacatccgaaattaaacaccctaaaaactcccctggggataacacccaccaaaatacacgtcaccaccataaacagattccttcacgaaaac 19311179  T
Q  112 gaccactgttaaaaccatatccaac 136  Q
    || |||||| ||||| |||||||||    
T  19311180 gagcactgtaaaaacgatatccaac 19311204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 19673429 - 19673219
Alignment:
Q  51 cctaaggacaacagccaccaaaatacacatcacca---cctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac--cacccatcg 145  Q
    ||||| || |||| ||||||||| |||| ||||||   ||| |||||||| | |||| | ||| ||||||||| ||| | |||||||||  || || |||    
T  19673429 cctaaagataacacccaccaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcg 19673330  T
Q  146 tcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaa 245  Q
    |||||||||||||| ||  | ||||  | ||||||||||| || | ||||| |||||||||  | |||||| ||||||||| |||||||| ||| | ||     
T  19673329 tcactactcacccccaa--agaacactcctcaaaattaaactctcagtcctcaacaccaaagtttagccacatccgaaaagttcatatccaaaatatcat 19673232  T
Q  246 ttagcttccacca 258  Q
    |||||||||||||    
T  19673231 ttagcttccacca 19673219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 52009175 - 52009083
Alignment:
Q  42 aaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaa 135  Q
    |||||||||||| ||||||||  |||||||||  |||  ||||||||||||||||||   |||||||| |||||||||| ||||| ||||||||    
T  52009175 aaaaacacccctgaggacaacc-ccaccaaaaatcacgccaccacctaaaacagactccgtcatggaagcgaccactgtaaaaacgatatccaa 52009083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 263
Target Start/End: Original strand, 19814975 - 19815187
Alignment:
Q  54 aaggacaacagccaccaaaatacacatcacca---cctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaa--ccacccatcgtca 148  Q
    |||||||||| ||||||||| |||| ||||||   ||| |||||||| | |||| | ||| |||||| || ||||  ||||||||  ||| || | ||||    
T  19814975 aaggacaacacccaccaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtca 19815074  T
Q  149 ctactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaatta 248  Q
    ||||||||||| ||  || || ||  |||| |||||| || | ||||| |||||||||  | |||||| || |||||| || ||||||||||| || |||    
T  19815075 ctactcacccccaaagaacacttc--tcaagattaaactctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcattta 19815172  T
Q  249 gcttccaccacctct 263  Q
    |||||||||| ||||    
T  19815173 gcttccaccatctct 19815187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 43373862 - 43373907
Alignment:
Q  53 taaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    ||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  43373862 taaggacaacacccaccaaaataaacatcaccccctaaaactgact 43373907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 35341177 - 35341209
Alignment:
Q  133 caaccacccatcgtcactactcaccccaaagaa 165  Q
    |||||||||||||||||||||||||||| ||||    
T  35341177 caaccacccatcgtcactactcaccccagagaa 35341209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 50518803 - 50519007
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    |||||| |||| |||||||||||||||| ||||||||||| | ||||| ||| ||| |||||||||| |||||| ||||||||||||  ||||  || ||    
T  50518803 ataggcggaacacccgaaaataaacaccctaaaaacacccatgaggaccacacccaacaaaatacacctcaccatctaaaacagactccttca-cgatac 50518901  T
Q  112 gaccactgttaaaaccatatccaaccacccatcgtcactactcacc-ccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactg 210  Q
     |||||||| ||||| ||||| ||| | |||||||||||||||||| ||||||||||||| || | |||| |||||||  |||||||||||||||| |||    
T  50518902 caccactgtaaaaacgatatctaacgatccatcgtcactactcacctccaaagaaaaacacccctaaaaaataaattcctcgtcctgaacaccaaagctg 50519001  T
Q  211 agccac 216  Q
    ||||||    
T  50519002 agccac 50519007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 37998964 - 37999125
Alignment:
Q  100 attcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaa 199  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||   ||| ||||||| |||| ||||||||| |  ||||||| ||    
T  37998964 attcatgaaaacgaccactgttaaaacgatatccaaccactcatcgtcaccactcacaaaaaa-aaaaacacccattaaaattaaacttcccgtcctaaa 37999062  T
Q  200 caccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctc 262  Q
    |||||||  ||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||    
T  37999063 caccaaagttgatccacctccaaaaagctcctatccaaaagatcaattagcttccaccacctc 37999125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 14194297 - 14194054
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    |||||| ||||  ||||||||||||| | ||||||||| | | ||||| ||| |||||||||||||| |||||||||||||||||||   ||| | || |    
T  14194297 ataggcggaacatccgaaaataaacatcctaaaaacactcatgaggaccacacccaccaaaatacacgtcaccacctaaaacagactccatcacgaaatc 14194198  T
Q  112 gaccactgttaaaaccatatccaaccacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactg 210  Q
    | ||||||  | ||| ||||||||||| |||||||||||||||||||| ||| ||||||| || | |||| |||   |  | ||||||  ||||||||||    
T  14194197 g-ccactg-aataacgatatccaaccatccatcgtcactactcaccccaaaataaaaacacccttaaaaaataacccccacttcctgagaaccaaaactg 14194100  T
Q  211 agccacctccgaaaagctcatatccgaaagaccaattagcttccac 256  Q
    |||||| |||||||||||| || ||||||||| | | |||||||||    
T  14194099 agccacgtccgaaaagctcctaaccgaaagacaattcagcttccac 14194054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 261
Target Start/End: Complemental strand, 37123716 - 37123497
Alignment:
Q  44 aaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcca--accaccc 141  Q
    |||||||| | | ||||||| |||||||||||||||||||||  ||||| |||||| |||| | ||||||||||||| ||||| |||||||  ||||||     
T  37123716 aaacacccttgaagacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacct 37123617  T
Q  142 atcgtcactactcacc-ccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaag 240  Q
     | ||||||||||||| |||||||  |||| || || |||||||| || | |||| ||||| |||| ||||||||| | |||||||||||| || |||||    
T  37123616 gttgtcactactcaccgccaaagatgaacacccctccaaattaaactctcagtccagaacatcaaagctgagccacat-cgaaaagctcatgtctgaaag 37123518  T
Q  241 accaattagcttccaccacct 261  Q
    | ||   ||||||||||||||    
T  37123517 atcatacagcttccaccacct 37123497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 263
Target Start/End: Complemental strand, 14879708 - 14879550
Alignment:
Q  108 aaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacacca 204  Q
    ||||||||||||  ||||| |||||||||  ||| ||||||||||| ||||||| ||||||||||| || ||||||||||| || | | | |||||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaaaaacacccctcaaaattaaactcccagacttgaacacca 14879609  T
Q  205 aaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    || | ||||||| |||||||||||| |||| |||||| || | ||||||||||||||||    
T  14879608 aacccgagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctct 14879550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 25648043 - 25647800
Alignment:
Q  19 gaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccact 118  Q
    |||| |||||||||||||||| ||||||||| | | ||||| ||| ||||||||  |||  ||||||| ||||||| |||   ||| | |||| ||||||    
T  25648043 gaacacccgaaaataaacaccctaaaaacacacatgaggaccacacccaccaaataacatgtcaccacataaaacatactccatcacg-aaaccaccact 25647945  T
Q  119 gttaaaaccatatccaaccacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacc 217  Q
    |  ||||| ||||||||||| ||||| |||||||||||||| ||| ||||||| || | |||| |||   |  | |||||| |||||||||||||||||     
T  25647944 ga-aaaacgatatccaaccatccatcatcactactcacccccaaataaaaacacccctaaaaaataacccccacttcctgagcaccaaaactgagccacg 25647846  T
Q  218 tccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    ||||||||||||||| |||||||| || | | ||| ||||||||||    
T  25647845 tccgaaaagctcataaccgaaagatcattcaactttcaccacctct 25647800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 48893080 - 48893153
Alignment:
Q  25 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    |||||||||||||| |||||||||||||| | ||||||| |||||||||||||  ||||||||||||| |||||    
T  48893080 ccgaaaataaacactttaaaaacacccctgaagacaacacccaccaaaatacatgtcaccacctaaaagagact 48893153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 7105140 - 7105052
Alignment:
Q  80 tcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcca--accacccatcgtcactactcaccccaaagaaa 166  Q
    |||||||||||||||||||| |||| | |||| | |||| | |||||  ||||||  ||||||||||||||||||||||||||||||||    
T  7105140 tcaccacctaaaacagacttcttcaagaaaacaagcactataaaaacagtatccaccaccacccatcgtcactactcaccccaaagaaa 7105052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 4171111 - 4170963
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaa-tacacatcaccacctaaaacagacttattcatggaaa 110  Q
    |||||| |||| || ||||||||||||| |||||||| |  | ||||||||| |||| |||| || || ||| ||||||||| |||||  |||| | |||    
T  4171111 ataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatatacgtcatcacctaaaatagactccttcacgaaaa 4171012  T
Q  111 cgaccactgttaaaaccatatccaaccacccatcgtcactactcacccc 159  Q
     ||||| |||  |||  ||||||||||| ||||||||||||||||||||    
T  4171011 tgaccattgtataaatgatatccaaccatccatcgtcactactcacccc 4170963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 12086595 - 12086484
Alignment:
Q  26 cgaaaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 124  Q
    |||||||||||| ||||||| | |||||  | ||| ||| ||||||||||| ||||||||||||||||||||  |||||| | |||||| |||||| |||    
T  12086595 cgaaaataaacatcttaaaagataccccctaagaccacacccaccaaaataaacatcaccacctaaaacagatgtattcaagaaaacgatcactgtaaaa 12086496  T
Q  125 accatatccaac 136  Q
    || |||| ||||    
T  12086495 acgatattcaac 12086484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 25594296 - 25594412
Alignment:
Q  45 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaa-ccacccat 143  Q
    ||||||| | ||||||||| |||||| |||| ||||||| |||||||||| |||  ||||   ||||||||||||  ||||| |||||||| ||||||||    
T  25594296 aacacccatgaggacaacacccaccacaataaacatcactacctaaaacatactccttcaca-aaacgaccactgaaaaaacgatatccaaaccacccat 25594394  T
Q  144 cgtcactactcaccccaa 161  Q
    || ||||||||| |||||    
T  25594395 cgccactactcatcccaa 25594412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 28937443 - 28937574
Alignment:
Q  19 gaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccact 118  Q
    |||| |||||||||||||||| |||||||||||| || ||||||| ||||||||||        |||||||||||||||   |||| | ||  |||||||    
T  28937443 gaacacccgaaaataaacaccctaaaaacacccc-aatgacaacacccaccaaaat--------ccacctaaaacagaccccttcacgaaagtgaccact 28937533  T
Q  119 gttaaaaccatatcca--accacccatcgtcactactcacc 157  Q
    || ||||| |||||||  ||||||||||| |||||||||||    
T  28937534 gtaaaaacgatatccaataccacccatcgccactactcacc 28937574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 39021122 - 39021244
Alignment:
Q  141 catcgtcactactcac-cccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccg-aa 238  Q
    |||||||||||||||| |||||||||| ||   | ||||||| ||| || | ||||| ||||||||| || |||||| |||||||| |||||||||| ||    
T  39021122 catcgtcactactcacacccaaagaaacacg--cgtcaaaatgaaactctcagtcctcaacaccaaagctaagccacatccgaaaaactcatatccgaaa 39021219  T
Q  239 agaccaattagcttccaccacctct 263  Q
    ||| |||| |||| |||||| ||||    
T  39021220 agatcaatcagctaccaccatctct 39021244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 1652646 - 1652692
Alignment:
Q  53 taaggacaacagccaccaaaatacacatcaccacctaaaacagactt 99  Q
    ||||||||||| ||||||||||| |||||||| |||||||| |||||    
T  1652646 taaggacaacacccaccaaaataaacatcaccccctaaaactgactt 1652692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 27399278 - 27399228
Alignment:
Q  45 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacag 95  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||||||||    
T  27399278 aacacccatgaggacaacacccaccaaaataaacatcatcacctaaaacag 27399228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 33143666 - 33143822
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    |||||| |||| |||||||| |||||||  |||||| |||   |||| |||| |||||| || |||| ||||||||||||||| |||  |||| | ||||    
T  33143666 ataggcggaacacccgaaaa-aaacacccaaaaaactcccaagaggataacatccaccataaaacacgtcaccacctaaaacaaactccttcacgaaaac 33143764  T
Q  112 gaccactgttaaaaccatatccaa--ccacccatcgtcactactcaccccaaagaaaa 167  Q
     |||||||   |||| ||||||||  ||| || ||||||||||||||||  |||||||    
T  33143765 caccactgaacaaacgatatccaaccccatccgtcgtcactactcacccttaagaaaa 33143822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 41039524 - 41039463
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaa 73  Q
    |||||| |||| || ||||||||||||| ||||||||||| | | ||||||| |||||||||    
T  41039524 ataggcggaacaccagaaaataaacaccctaaaaacacccgtgaagacaacacccaccaaaa 41039463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 14280305 - 14280345
Alignment:
Q  55 aggacaacagccaccaaaatacacatcaccacctaaaacag 95  Q
    ||||||||| |||| ||||||||| ||||||||||||||||    
T  14280305 aggacaacacccactaaaatacacgtcaccacctaaaacag 14280345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 37074 - 36827
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    |||||| ||||  ||||||||||||||| |||||| ||||| | ||||| ||| ||| |||||||||| |||||||||||||||||||  ||||  ||||    
T  37074 ataggcggaacatccgaaaataaacaccataaaaaacacccatgaggaccacacccaacaaaatacacgtcaccacctaaaacagactccttca-cgaaa 36976  T
Q  111 cgaccactgttaaaaccatatccaaccacccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaact 209  Q
    | |||||||| ||||| | ||||||||| ||| |||||||||||| ||||||||||||||| || | |||| | ||  | ||||||||||||||||| ||    
T  36975 ccaccactgtaaaaacgacatccaaccatccaccgtcactactcacccccaaagaaaaacacccctaaaaaat-aaccccccgtcctgaacaccaaagct 36877  T
Q  210 gagccacctccgaaaagctcatatccgaaagaccaattagcttccaccac 259  Q
    |||||||   |||||||||| || ||||||||||| | | ||||||||||    
T  36876 gagccacaatcgaaaagctcctaaccgaaagaccattcaacttccaccac 36827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 31290742 - 31290986
Alignment:
Q  19 gaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccact 118  Q
    |||| |||||||||||||||| ||||||||||||| |||||||   ||  || | |||||||||||||||||| ||||||  |||  | |||||||||||    
T  31290742 gaacacccgaaaataaacaccataaaaacacccctgaggacaattcccttcata-tacacatcaccacctaaatcagactccttcgcgaaaacgaccact 31290840  T
Q  119 gttaaaaccatatccaaccacccatcgtcactactcaccc-caaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacc 217  Q
    || ||||  ||| ||||||| ||||||||||||||||||| |||||||||||| || | |||| ||||     | ||  |||||||||| |||||||||     
T  31290841 gtaaaaatgatagccaaccatccatcgtcactactcaccctcaaagaaaaacacccctaaaaaataaacggctcatctagaacaccaaagctgagccaca 31290940  T
Q  218 tccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    |||||||||||| ||||||||||| |||  | ||||||||||||||    
T  31290941 tccgaaaagctcctatccgaaagatcaagcaacttccaccacctct 31290986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 32882734 - 32882584
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    ||||||||||| |||||||||||||||| ||||| |||||||  ||||||||| ||||||||||| |||||||| |||||||| ||||  |||| | |||    
T  32882734 ataggcagaacacccgaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaa 32882635  T
Q  111 cgaccactgttaaaaccatatcca--accacccatcgtcactactcacccc 159  Q
    ||| |||||| || || |||||||  |||||||||||||||||||||||||    
T  32882634 cgagcactgtaaacacgatatccaacaccacccatcgtcactactcacccc 32882584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 34775239 - 34774985
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaac-acccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    |||||| |||| |||||||||||||||||||||||  |||  | ||||||||| |||||||||||||| ||| |||||||||||||||  |||| | |||    
T  34775239 ataggcggaacacccgaaaataaacaccttaaaaaataccaatgaggacaacacccaccaaaatacacgtcatcacctaaaacagactccttcacgaaaa 34775140  T
Q  111 cgaccactgttaaaaccatatcc--aaccacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaac 208  Q
    |||| ||||| ||||| | ||||   || |||| ||||||||||||||||||| |  ||||| || | |||| |||| || |  |||| ||||||||| |    
T  34775139 cgacaactgtaaaaacgaaatcccacactacccgtcgtcactactcaccccaatg--aaacacccgtaaaaaataaactcccaatcctcaacaccaaagc 34775042  T
Q  209 tgagccacctcc-gaaaagctcatatccgaaa-gaccaattagcttccaccacctct 263  Q
    |||||||| ||| ||||| ||| |||| ||||  | |||| ||||||||||||||||    
T  34775041 tgagccacatccggaaaaactcctatctgaaacaatcaatcagcttccaccacctct 34774985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 46768542 - 46768340
Alignment:
Q  13 taggcagaacccccgaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    ||||| |||| |||||||||||||||| |||||| ||||||  ||||||||| |||||||||| ||| |||||||||||||||||||  |||| | ||||    
T  46768542 taggcggaacacccgaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaac 46768443  T
Q  112 gaccactgttaaaaccatatcca--accacccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaac 208  Q
    ||||||        | |||||||  ||  ||||||||||||||||| ||||||||||||| | || |||| | |||| || |  |||||||||||||| |    
T  46768442 gaccac--------cgatatccaacactgcccatcgtcactactcacccccaaagaaaaaaaaccctcaagactaaactcccaatcctgaacaccaaagc 46768351  T
Q  209 tgagccacctc 219  Q
    | |||||||||    
T  46768350 taagccacctc 46768340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 10785194 - 10785319
Alignment:
Q  31 ataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccat 129  Q
    |||||||||||||||| ||||| | ||||||||| ||| |||||||||  | | ||| |||||||||||  |||| | |||||||  |||  ||||| ||    
T  10785194 ataaacaccttaaaaaacacccttgaggacaacacccatcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgat 10785293  T
Q  130 atccaaccacccatcgtcactactca 155  Q
    ||||||||||||||||||||||||||    
T  10785294 atccaaccacccatcgtcactactca 10785319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 38548821 - 38548942
Alignment:
Q  42 aaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc--aaccac 139  Q
    |||||||| | ||||| ||||| ||||||||||| ||||||||||||||||||||||  ||||  ||||||| |||||  ||||| |||| |  ||||||    
T  38548821 aaaaacactcataagggcaacatccaccaaaataaacatcaccacctaaaacagactctttca-cgaaacgatcactg-aaaaacgatattcataaccac 38548918  T
Q  140 ccatcgtcactactcaccccaaag 163  Q
    |||||||||||||||| |||||||    
T  38548919 ccatcgtcactactcatcccaaag 38548942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 16149143 - 16148993
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaa-acacccctaaggacaacagccacc-aaaatacacatcaccacctaaaacagacttattcatggaa 109  Q
    |||||| |||| | |||||||||||||| ||||| ||| || | ||||||| ||||  | ||||||||| ||||||||||||||||||   |||||| ||    
T  16149143 ataggcggaacacgcgaaaataaacaccctaaaagacaaccttgaggacaaaagcccgctaaaatacacgtcaccacctaaaacagacaccttcatgtaa 16149044  T
Q  110 acgaccactgttaaaaccatatcc--aaccacccatcgtcactactcacccc 159  Q
    ||||| ||||  ||||| ||||||  || |||||||||||||||||||||||    
T  16149043 acgactactg-aaaaacgatatccaaaagcacccatcgtcactactcacccc 16148993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 11439747 - 11439817
Alignment:
Q  25 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacaga 96  Q
    ||||||||||||||| ||||| | ||||| | ||||||| |||||||||||||| |||||||||||||||||    
T  11439747 ccgaaaataaacaccctaaaatc-cccctgaagacaacatccaccaaaatacacgtcaccacctaaaacaga 11439817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 9313121 - 9313236
Alignment:
Q  113 accactgttaaaaccatatccaa--ccacccatcgtcactactcacccc--aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaac 208  Q
    |||| ||||||||| ||||||||  |||| ||||||| ||| |||||||  ||||||||||| || ||||||||||| || | |||||||| |||||| |    
T  9313121 accattgttaaaacgatatccaataccactcatcgtcgctaatcacccccaaaagaaaaacacccttcaaaattaaactcccagtcctgaa-accaaagc 9313219  T
Q  209 tgagccacctccgaaaa 225  Q
    |||||||| ||||||||    
T  9313220 tgagccacatccgaaaa 9313236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 41126261 - 41126353
Alignment:
Q  69 caaaatacacatcaccacctaaaacagacttattcatggaaac-gaccactgttaaaaccatatcca--accacccatcgtcactactcacccc 159  Q
    ||||||||| |||||||||||||||||||  ||||| | ||||  ||||||| |||||| |||||||  |||||||||||||||||||||||||    
T  41126261 caaaatacatatcaccacctaaaacagacgcattcacgaaaacaaaccactg-taaaacgatatccatcaccacccatcgtcactactcacccc 41126353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 6583118 - 6583183
Alignment:
Q  198 aacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    ||||||||| ||||||| | |||||||||||| |||| |||||| |||| ||||||||||||||||    
T  6583118 aacaccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctct 6583183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 6582972 - 6583052
Alignment:
Q  19 gaacccccgaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    |||| |||||||||||||||| |||||| ||| | | | || |||| |||||||||||||| |||||||||||||||||||    
T  6582972 gaacacccgaaaataaacaccataaaaaacactcatgatgataacacccaccaaaatacacgtcaccacctaaaacagact 6583052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 38544503 - 38544619
Alignment:
Q  45 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc--aaccaccca 142  Q
    ||||||| | |||||||||  |||||||||| ||||||||||||||||||||||  |||| || || || |||||  ||||| ||||||  |||||| ||    
T  38544503 aacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcacgg-aatgatcactg-gaaaacgatatccataaccactca 38544600  T
Q  143 tcgtcactactcaccccaa 161  Q
    ||||||||||||| |||||    
T  38544601 tcgtcactactcatcccaa 38544619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 16147736 - 16147672
Alignment:
Q  199 acaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
    |||||||| ||||||||| ||||||||||||||||| |||||| || | | ||| ||||||||||    
T  16147736 acaccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctct 16147672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 16577579 - 16577520
Alignment:
Q  59 caacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccact 118  Q
    ||||| ||||||||||| |||||| |||||||||||||||  |||| | |||||||||||    
T  16577579 caacacccaccaaaataaacatcatcacctaaaacagactctttcacgaaaacgaccact 16577520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 27102549 - 27102401
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    |||||| |||| |||||||||||||||| |||||||| || | ||||||||| ||||||||||         | |||||||||||    |||| | ||||    
T  27102549 ataggcggaacacccgaaaataaacaccctaaaaaca-ccatgaggacaacacccaccaaaat---------cccctaaaacagatactttcacgaaaac 27102460  T
Q  112 gaccactgttaaaaccatatcca--accacccatcgtcactactcaccccaaagaaaaa 168  Q
      ||||||| ||||| | |||||  ||||| ||||||||||||||||||||||||||||    
T  27102459 agccactgtaaaaacgaaatccaacaccactcatcgtcactactcaccccaaagaaaaa 27102401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 4430962 - 4430862
Alignment:
Q  108 aaacgaccactgttaaaaccatatccaa--ccacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaa 205  Q
    |||| ||||| || ||||| ||||||||  ||| || ||||| |||||||||||||||||||||| || || |||||||| || | | ||||| ||||||    
T  4430962 aaacaaccaccgtaaaaacgatatccaaaaccatccgtcgtcgctactcaccccaaagaaaaacacccctccaaattaaactccctggcctgagcaccaa 4430863  T
Q  206 a 206  Q
    |    
T  4430862 a 4430862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 9313054 - 9313095
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccct 53  Q
    |||||| |||| |||||||||||||||| |||||||||||||    
T  9313054 ataggcggaacacccgaaaataaacaccctaaaaacacccct 9313095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 32863260 - 32863345
Alignment:
Q  12 ataggcagaacccccgaaaataaacacctt-aaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacaga 96  Q
    |||||| |||| || |||||||||||||   ||||||||||   ||||||||| ||||||| |||||| ||||| |||||||||||    
T  32863260 ataggcggaacacctgaaaataaacaccaagaaaaacacccaagaggacaacacccaccaacatacacgtcaccgcctaaaacaga 32863345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 46603728 - 46603623
Alignment:
Q  12 ataggcagaacccccgaaaat-aaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa 110  Q
    |||||| |||| ||||||||| ||||| | | |||| |||||| | ||||||| ||||||||||| | ||||||| ||||||||||||| ||||  ||||    
T  46603728 ataggcggaacacccgaaaataaaacatcat-aaaagacccctgaagacaacacccaccaaaata-aaatcaccatctaaaacagacttcttca-cgaaa 46603632  T
Q  111 cgaccactg 119  Q
    |||||||||    
T  46603631 cgaccactg 46603623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 58495 - 58263
Alignment:
Q  12 ataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaac 111  Q
    ||||| ||||| ||| |||||||| ||| ||||||||||| | || ||| || |  ||||| |||||||||||||| ||||||||||  |||| | ||||    
T  58495 ataggtagaacacccaaaaataaataccctaaaaacacccatgagaacaccatcagccaaagtacacatcaccaccaaaaacagactccttcacgaaaac 58396  T
Q  112 gaccactgttaaaaccatatccaacc--acccatcgtcactactcac-cccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaac 208  Q
    ||||| ||| |||   |||||||||   |||| |||||||||||||| ||||||||| ||||  | ||||||||||| || | |||| |||||||||| |    
T  58395 gaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaacaacactcctcaaaattaaactctcagtcccgaacaccaaagc 58296  T
Q  209 tgagccacctccgaaaagctcatatccgaaaga 241  Q
    |||||||| | |||||||||| |||||||||||    
T  58295 tgagccacattcgaaaagctcttatccgaaaga 58263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 10248296 - 10248497
Alignment:
Q  28 aaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaac 126  Q
    |||| |||||||||||||| ||||| | ||||||||| || ||||||||||| ||||||||||||||| |||  |||| | ||||||||||||| |||||    
T  10248296 aaaaaaaacaccttaaaaaacacccttgaggacaacacccgccaaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaac 10248395  T
Q  127 catatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaa 224  Q
     | |||| ||  |||||||||||||||||||||||  |   ||||| || ||||||||||| ||   ||||| |||||||||  |||||||| |||||||    
T  10248396 gacatcccacaacacccatcgtcactactcaccccccaacgaaacacccgtcaaaattaaactctaagtcctcaacaccaaagttgagccacatccgaaa 10248495  T
Q  225 ag 226  Q
    ||    
T  10248496 ag 10248497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 17656457 - 17656600
Alignment:
Q  19 gaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatg-gaaacgaccac 117  Q
    |||| ||||||||| |||||| ||||||||||| | ||||||||| |||||||||| ||| |||||| ||||||||||||  |||| |  ||||||||||    
T  17656457 gaacacccgaaaattaacaccctaaaaacacccttgaggacaacacccaccaaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccac 17656556  T
Q  118 tgttaaaaccatatcca--accacccatcgtcactactcacccc 159  Q
    ||  ||||| |||||||  ||| | ||| |||||||||||||||    
T  17656557 tgcaaaaacgatatccaacaccgctcattgtcactactcacccc 17656600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 12197804 - 12197948
Alignment:
Q  27 gaaaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaa 125  Q
    ||||||||||||| ||||| ||||| ||  |||||||| |||| ||||||||| |||||||||| |||||||   |||||| | |||||||||   ||||    
T  12197804 gaaaataaacaccctaaaagacacctctggggacaaca-ccacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaa 12197902  T
Q  126 ccatatcca--accacccatcgtcactactca-ccccaaagaaaaa 168  Q
    | |||||||  ||||||| ||||||||||||| |||||||||||||    
T  12197903 cgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 12197948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 12442232 - 12442376
Alignment:
Q  27 gaaaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaa 125  Q
    ||||||||||||| ||||| ||||| ||  |||||||| |||| ||||||||| |||||||||| |||||||   |||||| | |||||||||   ||||    
T  12442232 gaaaataaacaccctaaaagacacctctggggacaaca-ccacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaa 12442330  T
Q  126 ccatatcca--accacccatcgtcactactca-ccccaaagaaaaa 168  Q
    | |||||||  ||||||| ||||||||||||| |||||||||||||    
T  12442331 cgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 12442376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 8862352 - 8862499
Alignment:
Q  28 aaaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaac 126  Q
    |||||||||||| ||||| ||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||  | || |  ||| |||| ||| |||||    
T  8862352 aaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtcaccacctaaaactgactcttacacgagaacaaccattgtaaaaac 8862451  T
Q  127 catatcca---accacccatcgtcactactcac-cccaaagaaaaaca 170  Q
     |||||||   ||||| | ||||||||||| || ||||||||||||||    
T  8862452 aatatccaaacaccacacgtcgtcactactgactcccaaagaaaaaca 8862499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 22325826 - 22325957
Alignment:
Q  28 aaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaacc 127  Q
    |||||||||| | ||||||||||| ||| ||| ||| ||||||||||| |  ||||||  |||||||||||  || |   ||||||||| ||| |||||     
T  22325826 aaaataaacatcctaaaaacacccataatgacgacacccaccaaaatataggtcaccatataaaacagactccttaacaaaaacgaccattgtaaaaacg 22325925  T
Q  128 atatccaaccacccatcgtcactactcacccc 159  Q
    |||||| |||| |||||||| | |||||||||    
T  22325926 atatccgaccatccatcgtcgccactcacccc 22325957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 17656872 - 17656967
Alignment:
Q  166 aaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacct 261  Q
    ||||| || ||||||||||| || |  || |||||||||||  ||||||||||| ||||||||| |||  |||||| || | ||||||||||||||    
T  17656872 aaacacccctcaaaattaaactcccaatcatgaacaccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacct 17656967  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 8862505 - 8862563
Alignment:
Q  200 caccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccacca 258  Q
    ||||||| ||||||||| || |||||| |||||||||||||| || | |||||||||||    
T  8862505 caccaaagctgagccacatctgaaaagttcatatccgaaagatcattcagcttccacca 8862563  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 30235879 - 30235932
Alignment:
Q  45 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    |||||||  |||||||||| ||||||||||| |||||||| |||||||| ||||    
T  30235879 aacacccaaaaggacaacacccaccaaaataaacatcaccccctaaaactgact 30235932  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 25184917 - 25184953
Alignment:
Q  55 aggacaacagccaccaaaatacacatcaccacctaaa 91  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  25184917 aggacaacacccaccaaaataaacatcaccacctaaa 25184953  T

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Target: scaffold0119 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 41915 - 42006
Alignment:
Q  70 aaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaa 161  Q
    ||||||||||||||||||||||||| | |  |||  |||||||||| || | ||||| ||||||||||||||||||||||||||| ||||||    
T  41915 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaaccacccatcgtcactactcgccccaa 42006  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 15120317 - 15120409
Alignment:
Q  13 taggcagaacccccgaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattca 104  Q
    ||||||||||  | || |||||||||| |||||| || || | ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  15120317 taggcagaacatctgacaataaacaccctaaaaaacatccatgaggacaacatccaccaaaatacacatcaccacctaaaacagactcattca 15120409  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 3880406 - 3880543
Alignment:
Q  108 aaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcacccc--aaagaaaaacatccatcaaaattaaattcgccgtcctgaacacc 203  Q
    ||||||||||| | ||||| |||||||||  || |  |||||||||||||||||  ||  ||||||| || ||||||||||| ||   ||| ||||||||    
T  3880406 aaacgaccactataaaaacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaacacccctcaaaattaaactccaagtcttgaacacc 3880505  T
Q  204 aaaactgagccacctccgaaaagctcatatccgaaaga 241  Q
    ||| ||||||||| ||| ||||||||||||||||||||    
T  3880506 aaagctgagccacatccaaaaagctcatatccgaaaga 3880543  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 263
Target Start/End: Original strand, 20701578 - 20701770
Alignment:
Q  75 acacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaa--ccacccatcgtcactactcacccc--aaagaaaaaca 170  Q
    |||| |||||||||| |||||||  ||||| | || | |||||||| ||||| ||||||||  | ||||||||||||||||||||||  ||| |||||||    
T  20701578 acacttcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcacccccaaaaaaaaaaca 20701677  T
Q  171 tccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 263  Q
     || | ||||  ||| ||   ||| |||||| ||||  |||||||| | |||||||||| ||||||||||| || | ||||||||| ||||||    
T  20701678 ccctttaaaaacaaactcctagtcttgaacaacaaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctct 20701770  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 16180675 - 16180715
Alignment:
Q  57 gacaacagccaccaaaatacacatcaccacctaaaacagac 97  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  16180675 gacaacatccaccaaaataaacatcaccacctaaaacagac 16180715  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 5607704 - 5607775
Alignment:
Q  27 gaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 98  Q
    ||||||||||| ||||||||||||||| |  |||||| |||| | |||||| || |||| ||||||||||||    
T  5607704 gaaaataaacatcttaaaaacacccctgaaaacaacacccactataatacaaattaccatctaaaacagact 5607775  T

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Target: scaffold1384 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 1365 - 1519
Alignment:
Q  12 ataggcagaacccccgaaaa-taaacaccttaaaa-acacccctaaggacaac---agccaccaaaatacacatcaccacctaaaacagacttattcatg 106  Q
    ||||||||||| |||||||| |||||||| ||||| |||||||||||||||||   | |||| ||||||||| |||||||||||||| ||||  | || |    
T  1365 ataggcagaacacccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccacaaaaatacacgtcaccacctaaaactgactcctacacg 1464  T
Q  107 gaaacgaccactgttaaaaccatatcca--accacccatcgtcactactcacccc 159  Q
      ||| |||||||| ||||| |||||||  ||||| | ||||||||||| |||||    
T  1465 agaacaaccactgtaaaaacgatatccaacaccacacgtcgtcactactgacccc 1519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 19687 - 19596
Alignment:
Q  70 aaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaa 161  Q
    ||||||||||||||||||||||||| |||  |||    |||||||| || | ||||| |||||||||||| |||||||||||||| ||||||    
T  19687 aaaatacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatccaaccacacatcgtcactactcgccccaa 19596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 782 - 898
Alignment:
Q  45 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc--aaccaccca 142  Q
    ||||||| | |||||||||  |||||||||| ||||||||||||||||||||||  |||| || || || |||||  ||||| ||||||  |||||| ||    
T  782 aacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcacgg-aatgatcactg-gaaaacgatatccataaccactca 879  T
Q  143 tcgtcactactcaccccaa 161  Q
    ||||||||||||| |||||    
T  880 tcgtcactactcatcccaa 898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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