View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_75 (Length: 362)
Name: NF0856_high_75
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_75 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 67 - 352
Target Start/End: Complemental strand, 53720189 - 53719905
Alignment:
| Q |
67 |
ccttttttctaagatggaataaattctgagtgacaccacaaaggcacaaaagatatgatttaatcttcctcccttttgtcactcgatacgtcgcactcat |
166 |
Q |
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| T |
53720189 |
ccttttttctaagatggaataaattctgagtgacaccacaaaggcacaaaagatatgatttaatcttcctcccttttgtcactcgatacgtcgcactcat |
53720090 |
T |
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| Q |
167 |
cacacccacaaccataaacccacgcccttagaaaatctctcaaaaccccaaatattaattatacacaaagaacaaactcccacacaaataattaccactt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53720089 |
cacacccacaaccataaacccacgcccttagaaaatctctcaaaaccccaaatattaattatacac-aagaacaaactcccacacaaataattaccactt |
53719991 |
T |
|
| Q |
267 |
cctttttctatatttgcatttatgagagcaactccatttttacttgccttatttattgcttcaaatctaaccattcatgattcatc |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53719990 |
cctttttctatatttgcatttatgagagcaactccatttttacttgccttatttattgcttcaaatctaaccattcatgattcatc |
53719905 |
T |
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