View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_76 (Length: 360)
Name: NF0856_high_76
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_76 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 54562246 - 54562462
Alignment:
| Q |
22 |
caaaatgttgattaagtttcaccgacaagttacgaagcaaatagaaaatggcctcaacagtagaatcggtttgcatagctgcatgttggacatcaaacca |
121 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54562246 |
caaaacgttgattaagtttcacggacaagttacgaagcaaatagaaaatggcatcaacagtagaatcggtttgcatagctgcatgttggacatcaaacca |
54562345 |
T |
|
| Q |
122 |
catcccagctgacttccaaacttgaattgcaaaaggacattcaaagaaaatgtggttcaggtccttataattagaattgcagctagcacacatcgtcgaa |
221 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| | |
|
|
| T |
54562346 |
catccaagctgacttccaaacatgaattgcaaaaggacattcaaagaaaatgtggttcagatcctcataattagaattgcaactagcacacatcgtcgga |
54562445 |
T |
|
| Q |
222 |
cacgacacacccttgtc |
238 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
54562446 |
cacgacacacccttgtc |
54562462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 46988591 - 46988654
Alignment:
| Q |
59 |
caaatagaaaatggcctcaacagtagaatcggtttgcatagctgcatgttggacatcaaaccacat |
124 |
Q |
| |
|
|||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
46988591 |
caaataaaaaatggcctcaa--gtaaaatcagtttgcatagctgcatgttggacatcaaaccacat |
46988654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 42625407 - 42625325
Alignment:
| Q |
84 |
gaatcggtttgcatagctgcatgttggacatcaaaccacatcccagctgacttccaaacttgaattgcaaaaggacattcaaa |
166 |
Q |
| |
|
||||||| |||||| | |||||||| | ||| |||| || || ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
42625407 |
gaatcggattgcatggaagcatgttgaatctcataccaaattccggctgaattccaaacttgaatcgcaaaaggacattcaaa |
42625325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 22786777 - 22786997
Alignment:
| Q |
18 |
gtagcaaaatgttgattaagtttcaccgacaagttacgaagcaaatagaaaatggcctcaacagtagaatcggtttgcatagctgcatgttggacatcaa |
117 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||| ||||||||||| |||||||||||||| | | |||| |||||||||||||||||||||||||||| |
|
|
| T |
22786777 |
gtagcaaaacgttgattaagttgcacatacaagttgcgaagcaaataaaaaatggcctcaacggcataatcagtttgcatagctgcatgttggacatcaa |
22786876 |
T |
|
| Q |
118 |
accacatcccagctgacttccaaacttgaattgcaaaaggacattcaaagaaaatgtggttcaggtccttataattagaattgcagctagcacacatcgt |
217 |
Q |
| |
|
|| ||||||||| ||| ||||| || |||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||| |
|
|
| T |
22786877 |
actacatcccagatgagttccacacctgaattgcaaaagggcattcaaagaaaatgtggttcatgtcctcatgattagaattgcagctagcacacaccgt |
22786976 |
T |
|
| Q |
218 |
cgaacacgacacacccttgtc |
238 |
Q |
| |
|
| |||||||||||| ||||| |
|
|
| T |
22786977 |
cagacacgacacacctttgtc |
22786997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 38950309 - 38950195
Alignment:
| Q |
20 |
agcaaaatgttgattaagtttcaccgacaagttacgaagcaaatagaaaatggcctcaacagtagaatcggtttgcatagctgcatgttggacatcaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38950309 |
agcaaaatgttgattaagtttcacggacaagttacgaagcaaatagaaaatggcctcaacagtagaatccgtttgcatagctgcatgttggacatcaaac |
38950210 |
T |
|
| Q |
120 |
cacatcccagctgac |
134 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38950209 |
cacatcccagctgac |
38950195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 38950196 - 38950139
Alignment:
| Q |
209 |
acacatcgtcgaacacgacacacccttgtcattaatttgggaatctattcatgtcatt |
266 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950196 |
acacatcgtcggacacgacacacccttgtcattaatttgggaatctattcatgtcatt |
38950139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 18610467 - 18610364
Alignment:
| Q |
135 |
ttccaaacttgaattgcaaaaggacattcaaagaaaatgtggttcaggtccttataattagaattgcagctagcacacatcgtcgaacacgacacaccct |
234 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||||||||||| ||||| || |||||||||||||| | | |||| |||| |||||||||||| | |
|
|
| T |
18610467 |
ttccacacctgaattgcaaaagggcattcgaagaaaatgtggttcaagtcctcatgattagaattgcagccaacgcacactgtcggacacgacacacctt |
18610368 |
T |
|
| Q |
235 |
tgtc |
238 |
Q |
| |
|
|||| |
|
|
| T |
18610367 |
tgtc |
18610364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 17178240 - 17178133
Alignment:
| Q |
59 |
caaatagaaaatggcctcaacagtagaatcggtttgcatagctgcatgttggacatcaaaccacatcccagctgacttccaaacttgaattgcaaaagga |
158 |
Q |
| |
|
|||||||||||||| | ||||| ||||| | ||||||||| ||||| || |||||| ||||||| || ||||| |||||||||||||| ||||||||| |
|
|
| T |
17178240 |
caaatagaaaatggtattaacagctgaatccgattgcatagcagcatgctgaacatcataccacattccggctgaattccaaacttgaatagcaaaagga |
17178141 |
T |
|
| Q |
159 |
cattcaaa |
166 |
Q |
| |
|
|||||||| |
|
|
| T |
17178140 |
cattcaaa |
17178133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 27010480 - 27010554
Alignment:
| Q |
92 |
ttgcatagctgcatgttggacatcaaaccacatcccagctgacttccaaacttgaattgcaaaaggacattcaaa |
166 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
27010480 |
ttgcatagcagcatgttcaacatcataccacattccagctgaattccaaacttgaatagcaaaaggacattcaaa |
27010554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 13701138 - 13701175
Alignment:
| Q |
129 |
gctgacttccaaacttgaattgcaaaaggacattcaaa |
166 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
13701138 |
gctgaattccaaacttgaattgcaaaagggcattcaaa |
13701175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2098 times since January 2019
Visitors: 6156