View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_86 (Length: 345)
Name: NF0856_high_86
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_86 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 32750136 - 32750284
Alignment:
| Q |
22 |
atgaggttgctaagagaaaacattagcacttgtttgatcaaactcaaactatattattccaaaataaggttctcgaaaaagcttaggaaggcagttttag |
121 |
Q |
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| T |
32750136 |
atgaggttgctaagagaaaaaatgggcacttgtttgatcaaactcaaactatattatttcaaaataaggttctcgaaaaagcttaggaaggcagttttag |
32750235 |
T |
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| Q |
122 |
ctgcatcttatctcataaatcatttgccttctagtgtcttaattccaaa |
170 |
Q |
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| T |
32750236 |
ctgcatcttatctcataaatcatttgccttctagtgtcttaattccaaa |
32750284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 50058786 - 50058921
Alignment:
| Q |
26 |
ggttgctaagagaaaacattagcacttgtttgatcaaactcaaactatattattccaaaataaggttctcgaaaaagctt--aggaaggcagttttagct |
123 |
Q |
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| T |
50058786 |
ggttgctgagagaaaaaatgggcatttgttagatcaaactcgagctatgttattccaaaataaggttcctaagaaattttggggggaggcagttttaaca |
50058885 |
T |
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| Q |
124 |
gcatcttatctcataaatcatttgccttctagtgtc |
159 |
Q |
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| T |
50058886 |
gcatcttacctcataaaccgtttaccttctagtgtc |
50058921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 28094564 - 28094515
Alignment:
| Q |
110 |
aggcagttttagctgcatcttatctcataaatcatttgccttctagtgtc |
159 |
Q |
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| T |
28094564 |
aggcggttttaattgcatcttatctcataaatcgtttaccttctagtgtc |
28094515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 31972615 - 31972658
Alignment:
| Q |
116 |
ttttagctgcatcttatctcataaatcatttgccttctagtgtc |
159 |
Q |
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| T |
31972615 |
ttttagctgcatcttatctcataaatcgtttaccttctaatgtc |
31972658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 29442408 - 29442362
Alignment:
| Q |
115 |
gttttagctgcatcttatctcataaatcatttgccttctagtgtctt |
161 |
Q |
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| T |
29442408 |
gttttaactgcatcttatctcataaatcgtttaccttctattgtctt |
29442362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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