View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_88 (Length: 343)
Name: NF0856_high_88
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_88 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 51054274 - 51054616
Alignment:
| Q |
1 |
aacaatgaaccaaaaacgatatcgttaagcttcgatttcaaatcacaatgtgtgaatcttaacgaattaccgtttcgaattgagttttcaaaacatgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51054274 |
aacaatgaaccaaaaacgatatcgttaagcttcgatttcaaatcacaatgtgtgaatcttaacgaattaccgtttcgaattgagttttcaaaacatgtga |
51054373 |
T |
|
| Q |
101 |
agaaaaaagaaactttacctatgcgattctgagagaaaattatcgtaatcgatgagacgaaaacatgcagagaatgaaatttccggtgtggcaaggaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51054374 |
agaaaaaagaaactttacctatgcgattctgagagaaatttatcgtaatcgatgagacgaaaacatgcagagaatgaaatttccggtgtggcaaggaaga |
51054473 |
T |
|
| Q |
201 |
ttgacggtggagaacgatcgccggagagtttgttgcggtgaagattccgccgtgggagtggaagtggttagtgtcacttgttttttctcgagattttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51054474 |
ttgacggtggagaacgatcgccggagagtttgttgcggtgaagattccgccgtgggagtggaagtggttagtgtcacttgttttttctcgagattttgaa |
51054573 |
T |
|
| Q |
301 |
aatctactctatatatatgaaaataaatgactaccaaaagtat |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51054574 |
aatctactctatatatatgaaaataaatgactaccaaaagtat |
51054616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3913 times since January 2019
Visitors: 6176