View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_90 (Length: 336)

Name: NF0856_high_90
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_90
NF0856_high_90
[»] chr5 (6 HSPs)
chr5 (10-306)||(10825616-10825913)
chr5 (10-294)||(7262871-7263166)
chr5 (10-306)||(19876504-19876814)
chr5 (10-240)||(23067167-23067410)
chr5 (106-305)||(37980260-37980458)
chr5 (147-306)||(24169468-24169627)
[»] chr1 (9 HSPs)
chr1 (10-306)||(31387452-31387747)
chr1 (10-306)||(4911838-4912134)
chr1 (10-305)||(42463525-42463820)
chr1 (10-305)||(27105926-27106223)
chr1 (10-305)||(46192194-46192490)
chr1 (10-305)||(15291480-15291786)
chr1 (163-306)||(42055805-42055948)
chr1 (106-306)||(18242877-18243077)
chr1 (106-306)||(50914802-50915002)
[»] chr8 (7 HSPs)
chr8 (10-306)||(44115821-44116118)
chr8 (10-306)||(41269783-41270082)
chr8 (10-305)||(42095659-42095964)
chr8 (106-304)||(8317040-8317238)
chr8 (106-306)||(20477617-20477817)
chr8 (114-306)||(18701177-18701369)
chr8 (10-83)||(18701052-18701126)
[»] chr7 (10 HSPs)
chr7 (18-306)||(46526327-46526615)
chr7 (10-306)||(42014059-42014358)
chr7 (10-306)||(6272753-6273053)
chr7 (10-304)||(41964256-41964560)
chr7 (106-306)||(31593743-31593942)
chr7 (146-306)||(10554532-10554692)
chr7 (106-232)||(45075571-45075698)
chr7 (10-83)||(45415235-45415309)
chr7 (107-307)||(3939851-3940051)
chr7 (10-83)||(45075485-45075561)
[»] chr3 (14 HSPs)
chr3 (18-304)||(48164731-48165016)
chr3 (10-306)||(177723-178021)
chr3 (18-304)||(18942908-18943196)
chr3 (10-306)||(45034596-45034893)
chr3 (10-305)||(52561013-52561322)
chr3 (18-192)||(18911880-18912056)
chr3 (106-305)||(55150760-55150959)
chr3 (187-306)||(18908123-18908242)
chr3 (197-306)||(9111-9220)
chr3 (10-93)||(23585209-23585292)
chr3 (10-93)||(23600032-23600115)
chr3 (106-191)||(10817-10902)
chr3 (107-306)||(13825446-13825645)
chr3 (247-306)||(54315423-54315482)
[»] chr2 (16 HSPs)
chr2 (10-306)||(31501034-31501335)
chr2 (10-238)||(19508503-19508732)
chr2 (10-278)||(26393702-26393979)
chr2 (10-306)||(40612742-40613050)
chr2 (109-302)||(4174703-4174896)
chr2 (10-306)||(2119746-2120051)
chr2 (108-306)||(2777070-2777268)
chr2 (145-306)||(34458438-34458599)
chr2 (106-303)||(29902176-29902373)
chr2 (228-306)||(694860-694938)
chr2 (114-306)||(15738222-15738414)
chr2 (10-83)||(15738096-15738170)
chr2 (106-306)||(21833406-21833606)
chr2 (115-240)||(20725491-20725616)
chr2 (156-257)||(26172682-26172783)
chr2 (10-83)||(4174935-4175009)
[»] chr6 (7 HSPs)
chr6 (10-306)||(5620242-5620542)
chr6 (10-305)||(33523360-33523665)
chr6 (31-304)||(19268667-19268951)
chr6 (224-306)||(2946159-2946241)
chr6 (106-288)||(23058643-23058828)
chr6 (10-83)||(2946286-2946360)
chr6 (183-305)||(33522390-33522512)
[»] chr4 (5 HSPs)
chr4 (10-306)||(54602448-54602748)
chr4 (10-301)||(12024778-12025078)
chr4 (106-304)||(39388810-39389008)
chr4 (156-305)||(16347123-16347272)
chr4 (10-83)||(39388699-39388773)
[»] scaffold1043 (2 HSPs)
scaffold1043 (106-305)||(2965-3164)
scaffold1043 (10-83)||(2845-2923)
[»] scaffold0079 (1 HSPs)
scaffold0079 (156-305)||(45589-45738)
[»] scaffold0688 (1 HSPs)
scaffold0688 (106-225)||(5433-5552)
[»] scaffold0097 (1 HSPs)
scaffold0097 (115-240)||(29320-29445)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 10825616 - 10825913
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gcc 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  10825616 aataatataaaggtatgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacataaaaaaaagcc 10825715  T
Q  109 taatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatc 208  Q
    |||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10825716 taatcacaatcaaccctactgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgcatc 10825815  T
Q  209 acctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  10825816 acctcctggacaatctcctctttagtcatctcggcttgcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcagg 10825913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 7263166 - 7262871
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnn 100  Q
    ||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||        |||||||||||||||      
T  7263166 aataatataaaaggtatgtcggaaaatgtcatagaaataaaaaaatgtacggaacatgtcataattatacatcaccatgatcaagtcaaaaagtacataa 7263067  T
Q  101 nnnnn-gcctaatcataatcaaccctgctgcctagcatgcctcgaccccc-tgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggc 198  Q
          |||| ||||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||  ||||||||||||||||||    
T  7263066 aaaaaagccttatcataatcaaccctgctgcctagcatgcctcggcccccctgcgccgcctggtaatctgatacgtaagggaagggcgaccagtaccggc 7262967  T
Q  199 tatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgt 294  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||||||| |||||||||| ||| |||||||||||||||| ||||| |||||    
T  7262966 tatccgcatcacctcctggacaatatcctctttagtcatcttggcttgcctgaccacaatatcgtcagctatatgcaccacatctcggatgatcgt 7262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 19876814 - 19876504
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattataca---------tcacagtcaaaaagtacat- 98  Q
    ||||||||||| |||| |||  |||||||||||||||||  |||||||| ||| |||||||||||||||||         ||||||| |||||||||||     
T  19876814 aataatataaacggtacgtctgaaaatgtcatagaaataagaaaatgtatggagcatgtcataattatacatcacgatcatcacagtaaaaaagtacata 19876715  T
Q  99 ---nnnnnnngcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtacc 195  Q
              ||||||||||||| |||||| |||| |||||||||||| ||| |||| | |||||||||||||||||||||||  |||||||||||||||    
T  19876714 aaaaaaaaaagcctaatcataattaaccctactgcgtagcatgcctcgcccctctgcgctgcctggcaatctgatacgtaagggcagggcgaccagtacc 19876615  T
Q  196 ggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgtt 295  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  19876614 ggctatccgcatcacctcctagacaatctcctctttagtcatctcgacttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgtt 19876515  T
Q  296 agtgtgtcagg 306  Q
    |||||||||||    
T  19876514 agtgtgtcagg 19876504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 23067410 - 23067167
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatn 99  Q
    ||||||||||| |||| |||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||         ||| |||||||||||     
T  23067410 aataatataaaaggtacgtccaaaaatgtcatagaaataagaaaatgtacggaacatgtcataattatacatcacgatcatcaaagtaaaaaagtacata 23067311  T
Q  100 nnnnnn---gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccg 196  Q
             ||||||||||||||||| ||  |||||||| ||||||| |||||||| |||||||| ||||||||||||||||  ||||||||||||||||    
T  23067310 aaaaaaaaagcctaatcataatcaactctattgcctagcttgcctcggccccctgcgccgcctggtaatctgatacgtaagggcagggcgaccagtaccg 23067211  T
Q  197 gctatccgcatcacctcctggacaatctcctctttagtcatctc 240  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  23067210 gctatccccatcacctcctggacaatctcctctttagtcatctc 23067167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 106 - 305
Target Start/End: Original strand, 37980260 - 37980458
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||| ||||||| |||||||| ||| | ||||||   ||||| | |||||||||||||||||| ||||||  |||||||| ||||| | ||||| ||    
T  37980260 gcctaataataatcagccctgctgtctaccctgcctctgacccctacgccgcctggcaatctgataagtaagggcagggcgactagtactg-ctatcagc 37980358  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||||||| ||||| ||||||||||    
T  37980359 atcacctcgtggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagcaatatgcaccacatcccggatgatcgtcagtgtgtcag 37980458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 306
Target Start/End: Complemental strand, 24169627 - 24169468
Alignment:
Q  147 ccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttg 246  Q
    |||||| ||||||| ||||||||||  |||||  ||  |||| |||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  24169627 ccctgcgccgcctgacaatctgataattaagggcagtacgactagtactagctatccgcatcacctcctggacaatctcctttttagtcatctcggcttg 24169528  T
Q  247 cctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||||||||||| ||| | ||||||||||||||  |||| ||||| |||||||||||    
T  24169527 cctggccacaatatcgtcagcaatatgcaccacatcttggatgatcgtcagtgtgtcagg 24169468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 31387747 - 31387452
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcct 109  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |       ||||    
T  31387747 aataatataaaggtatgtcggaaaatgtcatagaaatatcaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacgtaaaaaa-gcct 31387649  T
Q  110 aatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatca 209  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  31387648 aatcacaatcaaccctgctgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccacatca 31387549  T
Q  210 cctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  31387548 cctcctggacagtctcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcagg 31387452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 4911838 - 4912134
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcct 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||    
T  4911838 aataatataaaggtatgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacaatcaaaaagtacataaaaaaagcct 4911937  T
Q  110 aatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatca 209  Q
    ||||| |||||||| |||||||||| |||||||  |||||||| ||||||||||||||||||  |||||  |||||||||| ||||||||| ||||||||    
T  4911938 aatcacaatcaaccatgctgcctagtatgcctcagccccctgcgccgcctggcaatctgatatataagggcagggcgaccaataccggctacccgcatca 4912037  T
Q  210 cctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||| ||||| |||||||||||    
T  4912038 cctcctggacaatcttctctttagtcatctcggcttgcctggccacaatatcatcggttatatgcaccacatcccggatgatcgtcagtgtgtcagg 4912134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 42463525 - 42463820
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcct 109  Q
    |||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||       ||||    
T  42463525 aataatataaaggtatgttggaaaatatcatagaaataccaaaatgtacgaaacatgtcataattatacatcacagtgaaaaagtacataaaaaaagcct 42463624  T
Q  110 aatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatca 209  Q
    ||||  |||||||| ||| ||||||||||||||| | |||||| ||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||    
T  42463625 aatcgcaatcaaccatgcggcctagcatgcctcggctccctgcgccgcctgacaatctaatacgtaagggcagggcgaccagtaccggctatccgcatca 42463724  T
Q  210 cctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    ||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  42463725 cctcctggacaatctcctcgttagtcatctcggctttcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgttagtgtgtcag 42463820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 27105926 - 27106223
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn--gc 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||| |||||         ||    
T  27105926 aataatataaaggtatgtcggaaaatgtcatagaaataccaaaatgtacgaaacatgtcataattatatgtcacagtcaaaaaatacataaaaaaaaagc 27106025  T
Q  108 ctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcat 207  Q
    ||||||| |||||||| ||||||||||||||||||| |||||| | ||||||| ||||||||||| |||||  |||||||||||||||||||||||||||    
T  27106026 ctaatcacaatcaaccatgctgcctagcatgcctcggccccctacgccgcctgacaatctgatacataagggcagggcgaccagtaccggctatccgcat 27106125  T
Q  208 cacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||    
T  27106126 cacctcctggaaaatctcctctttagtcatctcggcttgcctgaccacaatatcatcagctatatgcaccatatcccggatgatcgtcagtgtgtcag 27106223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 46192194 - 46192490
Alignment:
Q  10 aataatataaag-gtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcc 108  Q
    |||||||||||  |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||       | |    
T  46192194 aataatataaaaagtatgttgaaaaatgtcatacaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaattacataaaaaaagtc 46192293  T
Q  109 taatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatc 208  Q
    ||||||||||||| | |||||||||| |||||||| |||||| |  |||||| ||||||||||| |||||  |||||||| |||||||| ||||||||||    
T  46192294 taatcataatcaaacgtgctgcctagaatgcctcggccccctacgtcgcctgacaatctgatacataaggggagggcgactagtaccggttatccgcatc 46192393  T
Q  209 acctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  46192394 acctccaggacaatctcctctttagtcatctcggcttgcctggccacaatatcatcaactatatgcaccacatcccggatgatcgtgagtgtgtcag 46192490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 15291480 - 15291786
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatn 99  Q
    ||||||||||| ||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||         ||| ||| |||||||     
T  15291480 aataatataaaaggtatgtccgaaaatgtcatagaaataaaaaaatgtacggaacatgtcataattatacatcacgatcatcacagtaaaatagtacata 15291579  T
Q  100 nnnnnn-gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggc 198  Q
           |||||||||||||||||| | ||||||||||||||||| ||| |||| |||||||||||||||||||||||||  ||| |||||| |||||||    
T  15291580 aaaaaaagcctaatcataatcaaccttactgcctagcatgcctcggccctctgcgccgcctggcaatctgatacgtaagggcaggacgaccaataccggc 15291679  T
Q  199 tatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagt 298  Q
    |||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |||    
T  15291680 tatccgtatcacctcctggacaatctcctatttagtcatctcggcttgcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgtcagt 15291779  T
Q  299 gtgtcag 305  Q
    |||||||    
T  15291780 gtgtcag 15291786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 163 - 306
Target Start/End: Original strand, 42055805 - 42055948
Alignment:
Q  163 aatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatca 262  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  42055805 aatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagctttcttggccacaatatca 42055904  T
Q  263 tcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
     || |||||||||| |||||| |||| ||||| |||||||||||    
T  42055905 ccaactatatgcacaacatcctggatgatcgtcagtgtgtcagg 42055948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 106 - 306
Target Start/End: Complemental strand, 18243077 - 18242877
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||| ||||||| |||||||||||| | ||||||  |||||||| |||||||||||||||||| ||||||  |||||||| |||||  | |||| |     
T  18243077 gcctaataataatcagccctgctgcctaccctgcctctgccccctgcgccgcctggcaatctgataagtaagggcagggcgactagtactagatatctgt 18242978  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||||||||| ||| ||||||||||||||||| || |||||||||||||||||||| ||| | |||||||||| |||| |||| ||||| ||||||||||    
T  18242977 atcacctcctagacgatctcctctttagtcatatcggcttgcctggccacaatatcgtcagcaatatgcaccagatccgggatgatcgtcagtgtgtcag 18242878  T
Q  306 g 306  Q
    |    
T  18242877 g 18242877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 106 - 306
Target Start/End: Complemental strand, 50915002 - 50914802
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||| ||||||| |||||||||||| | | ||||   ||||||| ||||||| |||| ||||| ||||||  |||||| | |||||  |||||||||    
T  50915002 gcctaataataatcagccctgctgcctaccctacctctggcccctgcgccgcctgacaatttgataagtaagggcagggcggctagtactagctatccgc 50914903  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||| | |||||||||||||| ||||| ||| | ||||||||||    
T  50914902 atcacctcctggacgatctcctctttagtcgtctcggcttgcctggccacaatatcgtcaacaatatgcaccacatctcggatgatcctcagtgtgtcag 50914803  T
Q  306 g 306  Q
    |    
T  50914802 g 50914802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 44115821 - 44116118
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gcc 108  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  44115821 aataatataaaggtatgttggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacataaaaaaaagcc 44115920  T
Q  109 taatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatc 208  Q
    |||||| |||||||||| ||||||||||||| ||  |||||||| || ||| ||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  44115921 taatcacaatcaaccctactgcctagcatgcatcagccccctgcgccacctagcaatctgatacgtaagggcagggcgaccggtaccggctatccgcatc 44116020  T
Q  209 acctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  ||| ||||| |||||||||||    
T  44116021 acctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcctagatgatcgtcagtgtgtcagg 44116118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 41270082 - 41269783
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaa-gtacatnnnnnnngc 107  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||        |    
T  41270082 aataatataaaaggtatgtcggaaaatgtcatataaataccaaaatgtacggaacatgtcataattatacatcacagtaaaaaaagtaaataaaaaaaac 41269983  T
Q  108 c-taatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgca 206  Q
    | ||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  41269982 cctaatcataatcaaccctgctgcctagcatgccttggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgca 41269883  T
Q  207 tcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  41269882 tcacctcttggacaatctcctctttagtcatctcggtttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcagg 41269783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 42095659 - 42095964
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnn 100  Q
    ||||||||||| ||||||||  |||||||||||||||||  ||||||||||||||||||||| ||||||||||||        |||||||||||||||      
T  42095659 aataatataaatggtatgtcagaaaatgtcatagaaataataaaatgtacggaacatgtcattattatacatcaccatgatcaagtcaaaaagtacataa 42095758  T
Q  101 nnnnn-gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggct 199  Q
          | ||||||||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||| ||||| ||    
T  42095759 aaaaaagtctaatcataatgaaccttgctgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccaataccgact 42095858  T
Q  200 atccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtg 299  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||||||||||||||| ||||| ||||| || |    
T  42095859 atccgcatcacctcctggacaatctcctctttagtcatctcggcttgcctagccacaatatcatcaaatatatgcaccacatctcggatgatcgtcagcg 42095958  T
Q  300 tgtcag 305  Q
    ||||||    
T  42095959 tgtcag 42095964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 106 - 304
Target Start/End: Original strand, 8317040 - 8317238
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||||| ||||||||||||| ||||||||| |||  || | ||| |||||||||||||||||| ||||||  |||||||| ||||   |||||||||    
T  8317040 gcctaatcacaatcaaccctgctacctagcatgtctctgcctcatgcgccgcctggcaatctgataagtaagggcagggcgactagtagtagctatccgc 8317139  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 304  Q
    |||||||||||||||||||||| |||||| ||||| | |||| ||||||||||||| ||| | |||||||||||||||||||| ||||| |||||||||    
T  8317140 atcacctcctggacaatctcctatttagtgatctcggtttgcttggccacaatatcgtcagcaatatgcaccacatcccggatgatcgtcagtgtgtca 8317238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 106 - 306
Target Start/End: Original strand, 20477617 - 20477817
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||| ||||||| || || | |||| | ||||||  |||||||| |||||| ||||| ||||| ||||||  |||||||| |||||  |||||||||    
T  20477617 gcctaataataatcagccatgtttcctaccctgcctctgccccctgcgccgcctcgcaatatgataagtaagggcagggcgactagtactagctatccgc 20477716  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||  || ||||| ||||||||||    
T  20477717 atcacctcctggacgatctcctctttagtcatctcggcatgcctggccacaatatcatcagcaatatgcaccacatcccatatgatcgtcagtgtgtcag 20477816  T
Q  306 g 306  Q
    |    
T  20477817 g 20477817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 306
Target Start/End: Original strand, 18701177 - 18701369
Alignment:
Q  114 ataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctc 213  Q
    ||||||| |||| ||| |||  |||||||  ||||||||   |||||||||||||||||||||||  ||||||||| |||| | | ||||| ||||||||    
T  18701177 ataatcagccctactgtctacgatgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggcgaccggtactgccaatccgaatcacctc 18701276  T
Q  214 ctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||  ||| | ||||||||||||||||   |   ||| | |||||||| |||| |||| |||||||||||||  || ||||| |||||||||||    
T  18701277 ctaaacagtatcctctttagtcatcttgccgctcctagacacaatattatcagctatctgcaccacatccctaatgatcgtcagtgtgtcagg 18701369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 18701052 - 18701126
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac 83  Q
    ||||||||||| |||||||   |||||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  18701052 aataatataaaaggtatgtacgaaaatgtcatagaaatactaaaatgtacgaaacatgtcataataatacatcac 18701126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 46526327 - 46526615
Alignment:
Q  18 aaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataa 117  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||        |||||||||||    
T  46526327 aaaggtatgtcggaaaatgtcatacaaataccaaaatgtaaggaacatgtcataattatacgtcacagtaaaaaagtacataaaaaaaccctaatcataa 46526426  T
Q  118 tcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctgg 217  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||| ||||    
T  46526427 tcaaccctgctgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgactagtaccggctatccgcatcacctactgg 46526526  T
Q  218 acaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||||||||||||||||||| |||||||| |||||||||||  || |||||||||||||||||||||| ||||| |||||||||||    
T  46526527 acaatctcctctttagtcatctcggcttgcctagccacaatatcgccaactatatgcaccacatcccggatgatcgtcagtgtgtcagg 46526615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 42014358 - 42014059
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng-- 106  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||              
T  42014358 aataatataaaaggtatgtcggaaaatgtcatacaaataccaaaatgtacggaatatgtcataattatacataacagtaaaaaagtacataaaaaaaaac 42014259  T
Q  107 cctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgca 206  Q
    |||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||    
T  42014258 cctaatcataatcaactctgctgcctagcatgcctcggccccctgctccgcctagcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 42014159  T
Q  207 tcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||| | |||||||||    
T  42014158 tcacctcctggaaaatcttctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatctcggatgatcgtcaatgtgtcagg 42014059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 6272753 - 6273053
Alignment:
Q  10 aataatataaag-gtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng-- 106  Q
    |||||||||||  |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||              
T  6272753 aataatataaaaagtatgtcggaaaatgtcatacaaataccaaaatgtacgaaacatgtcataattatacatcacagtaaaaaagtacataaaaaaaaaa 6272852  T
Q  107 -cctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
     | ||||||||||||| | | ||||||||||||||||| |||||||| |||||||| ||||||||||||||||  |||| ||||||||||||||||||||    
T  6272853 ccttaatcataatcaatcttactgcctagcatgcctcggccccctgcgccgcctggaaatctgatacgtaagggcagggtgaccagtaccggctatccgc 6272952  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||| ||||||||    
T  6272953 atcacctcctggacaatctcctctttagtcatctcgtcttgcctggccacaatatcgtcaactatatgcaccacatcccagatgatcgttaatgtgtcag 6273052  T
Q  306 g 306  Q
    |    
T  6273053 g 6273053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 41964560 - 41964256
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatn 99  Q
    ||||||||||| |||| |||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||         ||| |||||||||||     
T  41964560 aataatataaaaggtacgtccgaaaatgtcatagaaataagaaaatgtacggaacatgtcataattatacatcacgatcatcacagtaaaaaagtacata 41964461  T
Q  100 nnnnnngcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggct 199  Q
          || ||||||||||||||||| ||||||||||||||||||||||||||  || |||||||||||||||||||||  |||||||||||||||||||    
T  41964460 aaaaaagcttaatcataatcaaccctactgcctagcatgcctcgaccccctgcgtcgtctggcaatctgatacgtaagggcagggcgaccagtaccggct 41964361  T
Q  200 atccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtg 299  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||| ||||| |||     
T  41964360 atccgcatcacctcctggaaaatctcctctttagtcatctcggcttgcctgaccacaatatcatcaactatattcaccacatcccggatgatcgtcagtc 41964261  T
Q  300 tgtca 304  Q
    |||||    
T  41964260 tgtca 41964256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 106 - 306
Target Start/End: Complemental strand, 31593942 - 31593743
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||| ||||||| |||||||||||| | |||||| ||||| ||| |||||||| ||||||||| ||||||  |||||||| |||||  |||||||||    
T  31593942 gcctaataataatcagccctgctgcctaccctgcctctacccc-tgcgccgcctggaaatctgataagtaagggcagggcgactagtactagctatccgc 31593844  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    ||||  |||| ||| |||||||||||||||||||| ||||| || ||||||||||| ||| | || ||||||||||||||||| ||||| ||||||||||    
T  31593843 atcaaatcctagacgatctcctctttagtcatctcggcttggctagccacaatatcgtcagcaatttgcaccacatcccggatgatcgtcagtgtgtcag 31593744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 146 - 306
Target Start/End: Complemental strand, 10554692 - 10554532
Alignment:
Q  146 cccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagctt 245  Q
    |||||||  ||||||||||| ||||| ||||||  |||||||| |||||  ||||||  |||||||||||||| ||||||||||||||||||||| ||||    
T  10554692 cccctgcgtcgcctggcaatttgataagtaagggcagggcgactagtactagctatctacatcacctcctggataatctcctctttagtcatctcggctt 10554593  T
Q  246 gcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    |||||||||||||||| ||| | |||||||||||||||||||| ||||| | |||||||||    
T  10554592 gcctggccacaatatcgtcaccaatatgcaccacatcccggatgatcgtcaatgtgtcagg 10554532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 45075571 - 45075698
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccc-tgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccg 204  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| | | |||||||||||||||||||||||||||| || || ||||||||||||||||    
T  45075571 gcctaatcataatcaaccctgttgcctagcatgcctcgccccccctacgccgcctggcaatctgatacgtaaggatatggtgatcagtaccggctatccg 45075670  T
Q  205 catcacctcctggacaatctcctcttta 232  Q
    ||||||||| |||| |||||||||||||    
T  45075671 catcacctcttggataatctcctcttta 45075698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 45415309 - 45415235
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac 83  Q
    ||||||||||| |||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  45415309 aataatataaaaggtatgtcgggaaatgtcatggaaatacaaaaatgtacggaacatgtcataattatacatcac 45415235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 307
Target Start/End: Complemental strand, 3940051 - 3939851
Alignment:
Q  107 cctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgca 206  Q
    |||||| ||||||||||||||||||||  |||| |   ||||| || | |  || ||||||||||| ||||| ||||||||||||||| | | ||||| |    
T  3940051 cctaatgataatcaaccctgctgcctacaatgcttatgcccccggcgctgattgacaatctgatacataagggtagggcgaccagtactgccaatccgga 3939952  T
Q  207 tcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||| |||||| || | |||||||||||| ||||| ||   | ||||||||| || |||| |||| ||||| |||||||  || ||||| |||||||||||    
T  3939951 tcatctcctgcaccagctcctctttagttatctcggcgctcatggccacaacattatcaactatctgcacgacatccctaatgatcgtcagtgtgtcagg 3939852  T
Q  307 t 307  Q
    |    
T  3939851 t 3939851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 45075485 - 45075561
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaa--tgtacggaacatgtcataattatacatcac 83  Q
    ||||||||||| ||||| ||| |||||||||||||||||  ||||  |||||| |||||||||||||||||||||||    
T  45075485 aataatataaaaggtatatcgaaaaatgtcatagaaataaaaaaaaatgtacgaaacatgtcataattatacatcac 45075561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 48165016 - 48164731
Alignment:
Q  18 aaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataa 117  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||        |||||||||||    
T  48165016 aaaggtatgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattat-catcacagtaaaaaagtacataaaaaaaccctaatcataa 48164918  T
Q  118 tcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctgg 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  48164917 tcaaccctgctgcctagcatgcctcgaccccctgcgccgcctgacaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctgg 48164818  T
Q  218 acaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 304  Q
    ||||| ||||||||||||||||| |||| ||||| |||||||||||||  ||||||||||||||| ||||| ||||| |||||||||    
T  48164817 acaatatcctctttagtcatctcggctttcctggtcacaatatcatcagttatatgcaccacatctcggatgatcgtcagtgtgtca 48164731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 177723 - 178021
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gc 107  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||        |     
T  177723 aataatataaaaggtgtgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatactttacattcaaaaagtacataaaaaaaagt 177822  T
Q  108 ctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcat 207  Q
    ||||||||||||||||||| |||||||||||||||| ||||||   |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  177823 ctaatcataatcaaccctgttgcctagcatgcctcggccccctatgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgcat 177922  T
Q  208 cacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | ||| ||||| |||||||||||    
T  177923 cacctcctggacaatcttctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatctcagatgatcgtcagtgtgtcagg 178021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 18942908 - 18943196
Alignment:
Q  18 aaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng--cctaatcat 115  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||          |||||||||    
T  18942908 aaaggtatgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattataaatcacagtcacaaagtacataaaaaaaaaccctaatcat 18943007  T
Q  116 aatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  18943008 aatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctcgcaatttgatacgtaagggcagggcgaccagtaccggctatccgtatcacctcct 18943107  T
Q  216 ggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 304  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||| | |||| ||| | |||||||||    
T  18943108 ggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcaggtatatgcaccacatacaggatgatcatcagtgtgtca 18943196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 45034893 - 45034596
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcc 108  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||        ||    
T  45034893 aataatataaaaggtatgtcggaaaatgtcatacaaataccaaaatatacggaacatgtcataattatacatcagagtaaaaaagtacataaaaaaaccc 45034794  T
Q  109 taatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatc 208  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||   |||||| ||||||||| ||||||||||    
T  45034793 taatcataatcaaccctgctgcctagcatgcctcggccccctgcgccgcctggcaatttgatacgtaagggcggggcgatcagtaccggatatccgcatc 45034694  T
Q  209 acctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||  |||||||||||    
T  45034693 acctcctggacaatcttttcattagtcatctcagcttgcctggccacaatatcatcagctatatgcaccacctcccggatgatcgccagtgtgtcagg 45034596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 52561322 - 52561013
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtca---------aaaagtacatn 99  Q
    ||||||||||| |||| |||  |||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||         ||||||||||     
T  52561322 aataatataaaaggtacgtccgaaaatgtcatagaaataagaaaatgtacggaacatgtcataattatacatcacggtcatcatagtaaaaaagtacata 52561223  T
Q  100 nnnnnngcctaatcata----atcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtacc 195  Q
           ||||||||||    ||||||||| ||||||||||||||||| |||||||| ||||||| ||||||| |||||||||  |||||||||||||||    
T  52561222 aaaaaaacctaatcatatataatcaaccctactgcctagcatgcctcggccccctgcgccgcctgacaatctgttacgtaagggcagggcgaccagtacc 52561123  T
Q  196 ggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgtt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || ||     
T  52561122 ggctatccgcatcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggatgattgtc 52561023  T
Q  296 agtgtgtcag 305  Q
    ||||||||||    
T  52561022 agtgtgtcag 52561013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 18912056 - 18911880
Alignment:
Q  18 aaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacat---nnnnnnngcctaatca 114  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||           ||||||||    
T  18912056 aaaggtatgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattatacatcacagt-aaaaagtgcataaaaaaaaaaacctaatca 18911958  T
Q  115 taatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagt 192  Q
    ||||||||| ||||||||||||||| | | |||||||| |||||||||||||||||| ||||||  ||||||||||||    
T  18911957 taatcaaccttgctgcctagcatgctttggccccctgcgccgcctggcaatctgatatgtaagggcagggcgaccagt 18911880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 305
Target Start/End: Complemental strand, 55150959 - 55150760
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||| |||||||  | ||||||||| | ||||||  |||||||| |||||||||||||||||| ||||||  |||||||| |||||  | |||||||    
T  55150959 gcctaataataatcagtcatgctgcctaccctgcctctgccccctgcgccgcctggcaatctgataagtaagggcagggcgactagtactagttatccgc 55150860  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||||||||| ||| ||||||||||||||| |||| ||||||||| ||| |||||| ||| | |||||||||||||| ||||| ||| | ||||||||||    
T  55150859 atcacctcctagacgatctcctctttagtcctctcggcttgcctgaccataatatcgtcagcaatatgcaccacatctcggatgatcatcagtgtgtcag 55150760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 18908242 - 18908123
Alignment:
Q  187 accagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccgg 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |||| ||| |||||||||||||||||| |    
T  18908242 accagtaccggctatccgcatcacctcctggacaatctcctctttaggcatttcggcttgcctggccacagtatcgtcagctatatgcaccacatcccag 18908143  T
Q  287 atcatcgttagtgtgtcagg 306  Q
    || ||| | |||||||||||    
T  18908142 atgatcatcagtgtgtcagg 18908123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 197 - 306
Target Start/End: Complemental strand, 9220 - 9111
Alignment:
Q  197 gctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgtta 296  Q
    ||||||||||||||||||||||||||||||| | || ||||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||| |    
T  9220 gctatccgcatcacctcctggacaatctcctttctactcatctcggcttgcctggccacaatatcatcagcaatatgcaccacatcccggatgatcgtca 9121  T
Q  297 gtgtgtcagg 306  Q
     |||||||||    
T  9120 ctgtgtcagg 9111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 23585292 - 23585209
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaag 93  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  23585292 aataatataaaggtatgtaggaaaatgtcatagaaatacaaaaatgtacggaacatgtcatagttatacatcacaatcaaaaag 23585209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 23600115 - 23600032
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaag 93  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  23600115 aataatataaaggtatgtaggaaaatgtcatagaaatacaaaaatgtacggaacatgtcatagttatacatcacaatcaaaaag 23600032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 10902 - 10817
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccag 191  Q
    ||||||| ||||||| |||||||||||| | ||||||  |||||||| ||||||| |||||||||| ||||||  |||||||||||    
T  10902 gcctaataataatcagccctgctgcctaccctgcctctgccccctgcgccgcctgacaatctgataagtaagggcagggcgaccag 10817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 306
Target Start/End: Original strand, 13825446 - 13825645
Alignment:
Q  107 cctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgca 206  Q
    |||||| |||||||||||| |||||||   |||||   |||||||| | ||||||||||| ||||| |||||  |||||||| |||||   | ||||  |    
T  13825446 cctaatgataatcaaccctactgcctatggtgcctatgccccctgcgctgcctggcaatccgatacataagggcagggcgactagtactatcaatccaaa 13825545  T
Q  207 tcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||| |||||| || | |||| ||||||||||||| ||   | | ||||||| || |||| |||| ||||| ||||||| ||| ||||| |||||||||||    
T  13825546 tcatctcctgcaccagctccgctttagtcatctcggcactcatagccacaacattatcagctatctgcacgacatccctgatgatcgtaagtgtgtcagg 13825645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 54315423 - 54315482
Alignment:
Q  247 cctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    |||||||||||||| ||||||||| ||||||||||||| ||| ||||| | |||||||||    
T  54315423 cctggccacaatattatcatctatctgcaccacatccctgatgatcgtcaatgtgtcagg 54315482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 31501034 - 31501335
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn---- 105  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||               
T  31501034 aataatataaaggtatgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcatagtcaaaaagtacataaaaaaaaaaa 31501133  T
Q  106 -gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccg 204  Q
     ||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||  ||||||||||||||||  | |||||||||||||||||||||     
T  31501134 agcctaatcacaatcaaccctgctgcctagcatgcctcggccccctgcgtcgcctgaaaatctgatacgtaagggcaaggcgaccagtaccggctatcca 31501233  T
Q  205 catcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 304  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||    
T  31501234 catcacctcctggacaatatcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggataatcgtcagtttgtca 31501333  T
Q  305 gg 306  Q
    ||    
T  31501334 gg 31501335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 19508732 - 19508503
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng--c 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||          |    
T  19508732 aataatataaaggtatgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtccaaaagtacataaaaaaaaacc 19508633  T
Q  108 ctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcat 207  Q
    ||||||||||||||| |||||||||||||||||| | |||||||  |||||||||||||||||||||||||| | | |||||||||||||||||||||||    
T  19508632 ctaatcataatcaacactgctgcctagcatgccttggccccctgtgccgcctggcaatctgatacgtaaggacatg-cgaccagtaccggctatccgcat 19508534  T
Q  208 cacctcctggacaatctcctctttagtcatc 238  Q
    |||||||||||||||||||||||||||||||    
T  19508533 cacctcctggacaatctcctctttagtcatc 19508503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 10 - 278
Target Start/End: Complemental strand, 26393979 - 26393702
Alignment:
Q  10 aataatataaag-gtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnn 100  Q
    |||||||||||  |||||||| |||||||||||||||||  |||||||| |||||||||||||||||||||||||        |||||||||||||||      
T  26393979 aataatataaaatgtatgtcgaaaaatgtcatagaaataaaaaaatgtatggaacatgtcataattatacatcaccatgatcaagtcaaaaagtacatat 26393880  T
Q  101 nnnnngcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggcta 200  Q
         |||||||||||||||||||||||| ||||||||||||| ||||||||  |||| || ||||||||||||||||  ||||| |||||||| |||||    
T  26393879 aaaaagcctaatcataatcaaccctgctgactagcatgcctcggccccctgcgtcgccgggtaatctgatacgtaagggcagggcaaccagtactggcta 26393780  T
Q  201 tccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcacca 278  Q
    ||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||    
T  26393779 tccacatcacctcctggacaatctcctctttagtcatctcggattgcctggccacaatatcgtcagctatatgcacca 26393702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 40612742 - 40613050
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaa-tgtacggaacatgtcataattatacatcac---------agtcaaaaagtacat 98  Q
    ||||||||||| ||||||||| |||||||||||||||||| |||| |||| ||||||||||||||||||||||||          |||||||||||||||    
T  40612742 aataatataaaaggtatgtcggaaaatgtcatagaaatacgaaaaatgtatggaacatgtcataattatacatcatcatcatcatagtcaaaaagtacat 40612841  T
Q  99 nnnnnnn-gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccgg 197  Q
            |||||||||||||||||||||||||||| ||||||||  |||||||| || |||| |||||||||||||| ||  ||||||| |||||||||    
T  40612842 aaaaaaaagcctaatcataatcaaccctgctgcctaccatgcctctgccccctgcgccacctgacaatctgatacgtacgggcagggcgatcagtaccgg 40612941  T
Q  198 ctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttag 297  Q
    | |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||| |||||||||||||| ||||| ||    
T  40612942 ccatccgcatcacctcctagacaatctcctctttagtcatctcggcttgcttggccacaatatcattagctatatgaaccacatcccggatgatcgtcag 40613041  T
Q  298 tgtgtcagg 306  Q
    |||||||||    
T  40613042 tgtgtcagg 40613050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 109 - 302
Target Start/End: Complemental strand, 4174896 - 4174703
Alignment:
Q  109 taatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatc 208  Q
    |||| |||||||||||| ||||||||||| ||||||||| | || |||| |||||||||||||||||| |  ||||||||||||||||||||||||||||    
T  4174896 taattataatcaaccctactgcctagcatacctcgacccacagcgccgcttggcaatctgatacgtaacggcagggcgaccagtaccggctatccgcatc 4174797  T
Q  209 acctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgt 302  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  4174796 acctcctggacaatctcctctttagtcatctcggcttgtctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgt 4174703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 2119746 - 2120051
Alignment:
Q  10 aataatataaaggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnn 100  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||          ||||||||| |||||      
T  2119746 aataatataaaggtatgttgaaaaatgtcatagaaatatcaaaatgtacggaacatgtcacaataatacatcatcatcatcatagtcaaaaaatacataa 2119845  T
Q  101 nnnnngcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggcta 200  Q
          |||||| |||||||  | |||||||||   ||||||  |||||||| |||||||  ||||||||| ||||||  |  ||||| |||||  ||||    
T  2119846 aaaaaacctaataataatcagtcatgctgcctactctgcctctgccccctgcgccgcctgaaaatctgataagtaagggcaacgcgactagtactagcta 2119945  T
Q  201 tccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||| |||| ||||| ||||| |||||    
T  2119946 tccgcatcacctcctggacaatctcctctttagtcatctcggcttgtctggccacaataccatcaactatatgcaccccatctcggatgatcgtcagtgt 2120045  T
Q  301 gtcagg 306  Q
    ||||||    
T  2120046 gtcagg 2120051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 108 - 306
Target Start/End: Complemental strand, 2777268 - 2777070
Alignment:
Q  108 ctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcat 207  Q
    ||||| ||||||| || ||||||||| | ||||||  |||||||| |||||||| ||||||||| ||||||  ||||| || |||||  |||||||||||    
T  2777268 ctaataataatcagccatgctgcctaccctgcctctgccccctgcgccgcctggaaatctgataagtaaggggagggccactagtactagctatccgcat 2777169  T
Q  208 cacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||| |||||||||||| ||||| | |||||||||    
T  2777168 cacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcaacaatatgcatcacatcccggatgatcgtcaatgtgtcagg 2777070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 145 - 306
Target Start/End: Complemental strand, 34458599 - 34458438
Alignment:
Q  145 ccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagct 244  Q
    |||||||| |||||||||||||||||| ||||||  |||| |||| ||||| |||||| | |||||||||||||||||| |||||||| ||||||| |||    
T  34458599 ccccctgcgccgcctggcaatctgatatgtaagggcagggagaccggtacctgctatctgtatcacctcctggacaatcacctctttaatcatctcggct 34458500  T
Q  245 tgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||    
T  34458499 tgcctggccacaatatcatcagctatatgcaccacatcccgaatgatcgtcagtgtgtcagg 34458438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 106 - 303
Target Start/End: Complemental strand, 29902373 - 29902176
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||||| ||||||||||||||||||  ||| |||  |||||| | | |||||| ||||  ||| ||||||  |||||||||||||  | | |||||     
T  29902373 gcctaatcaaaatcaaccctgctgcctacgatgtctctgccccctacgctgcctggaaatccaatatgtaagggcagggcgaccagtagtgccaatccga 29902274  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtc 303  Q
    ||||||||||| |  ||||||||||||||||||||  |   |||| ||||||||| |||| |||| ||||||||||||||||| ||||| ||||||||    
T  29902273 atcacctcctgaaatatctcctctttagtcatctcgccactcctgaccacaatattatcagctatctgcaccacatcccggatgatcgtcagtgtgtc 29902176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 694860 - 694938
Alignment:
Q  228 ctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||||||||| |||||||| |||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||    
T  694860 ctttagtcatctcggcttgcctagccacaatatcatcagttatatgcaccacatcccggatgatcgtcagtgtgtcagg 694938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 306
Target Start/End: Original strand, 15738222 - 15738414
Alignment:
Q  114 ataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctc 213  Q
    ||||||| |||| ||| |||  |||||||  ||||||||   |||||||||||||||||||||||  ||||||||| |||| | | ||||| ||||||||    
T  15738222 ataatcagccctactgtctacgatgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggcgaccggtactgccaatccgaatcacctc 15738321  T
Q  214 ctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||  ||| | ||||||||||||||||   |   ||| | |||||||| |||| |||| |||||||||||||  || ||||| |||||||||||    
T  15738322 ctaaacagtatcctctttagtcatcttgccgctcctagacacaatattatcagctatctgcaccacatccctaatgatcgtcagtgtgtcagg 15738414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 15738096 - 15738170
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac 83  Q
    ||||||||||| |||||||   |||||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  15738096 aataatataaaaggtatgtacgaaaatgtcatagaaatactaaaatgtacgaaacatgtcataataatacatcac 15738170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 306
Target Start/End: Complemental strand, 21833606 - 21833406
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||| ||||||||| ||||||||||  |||||||  |||||||    ||||| ||||  |||| ||||||  ||||||||||||||   | |||||     
T  21833606 gcctaatgataatcaactctgctgcctacgatgcctctgccccctgagatgcctgacaattcgatatgtaagggcagggcgaccagtactaccaatccgg 21833507  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||| |||||| |||| ||||||||||||||||||  | ||| ||||||||| || |||| | |  ||||| ||||||| ||| || || | ||||||||    
T  21833506 atcatctcctgcacaagctcctctttagtcatctcttcctgcatggccacaacattatcagccacctgcacgacatccctgatgattgtcaatgtgtcag 21833407  T
Q  306 g 306  Q
    |    
T  21833406 g 21833406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 20725616 - 20725491
Alignment:
Q  115 taatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcc 214  Q
    |||| ||||||||||||||  ||||||   |||||||  | || || ||||||||||| |||||  |||||||||||||| | | ||||| |||| ||||    
T  20725616 taattaaccctgctgcctacgatgcctatgccccctgtgctgcatgacaatctgatacataagggcagggcgaccagtactgccaatccggatcatctcc 20725517  T
Q  215 tggacaatctcctctttagtcatctc 240  Q
    || || | ||||||||||||||||||    
T  20725516 tgcacgagctcctctttagtcatctc 20725491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 26172783 - 26172682
Alignment:
Q  156 gcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccac 255  Q
    |||||||||||| ||||||||||  |||||||||||||| | | ||||| || | |||||| || | |||| ||||||||||||| || ||| |||||||    
T  26172783 gcctggcaatctaatacgtaagggcagggcgaccagtactgccaatccggataatctcctgcaccagctccgctttagtcatctctgcctgcatggccac 26172684  T
Q  256 aa 257  Q
    ||    
T  26172683 aa 26172682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 4175009 - 4174935
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac 83  Q
    ||||||||||| |||| |||  ||| |||| ||||||||  ||||||||| ||||||||||||||||||||||||    
T  4175009 aataatataaaaggtacgtccgaaagtgtcgtagaaataagaaaatgtacagaacatgtcataattatacatcac 4174935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 5620542 - 5620242
Alignment:
Q  10 aataatataaag-gtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn--- 105  Q
    |||||||||||  |||||||  ||||||||||| ||||| ||||||||||||||  |||||||||||||||||| ||| |||||||||||              
T  5620542 aataatataaaaagtatgtcagaaaatgtcatacaaatatcaaaatgtacggaatgtgtcataattatacatcatagtaaaaaagtacataaaaaaaaaa 5620443  T
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||  |||||||| |||| |||||||||||    
T  5620442 gcctaatcataatcaaccctgctgcctagcatgcctcggctccctgcgccgcctggcaatctgatacgtaagggcagggcgactagtatcggctatccgc 5620343  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||| ||| |||||||||||||||| ||||| ||| | ||||||||||    
T  5620342 atcacctcctggacaatctcttctttagtcatctcggcttgtctgtccacaatatcgtcaactatatgcaccacatctcggatgatcatcagtgtgtcag 5620243  T
Q  306 g 306  Q
    |    
T  5620242 g 5620242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 33523665 - 33523360
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatn 99  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||         |||| ||||||||||     
T  33523665 aataatataaaaggtatgtcggaaaatgtcatagaaatacgaaaatgtacggaacatgtcataattatacatcaccataatcatagtccaaaagtacata 33523566  T
Q  100 nnnnnngcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggct 199  Q
          |||||||||||||||||||| ||| ||| | |||| |  |||||||| |||||| ||||||||||| ||||||  |||||| ||||||| ||||    
T  33523565 aaaaaagcctaatcataatcaaccctactgtctaccctgccgctgccccctgcgccgcctagcaatctgatatgtaagggcagggcggccagtactggct 33523466  T
Q  200 atccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtg 299  Q
    || || ||||||||||||||||||||||| |||||||||||  ||| |||||||||||||||||||  ||||||||||||||||||||| ||||| ||||    
T  33523465 attcgtatcacctcctggacaatctcctccttagtcatctcgtctttcctggccacaatatcatcagttatatgcaccacatcccggatgatcgtcagtg 33523366  T
Q  300 tgtcag 305  Q
    ||||||    
T  33523365 tgtcag 33523360  T

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Target: chr6; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 31 - 304
Target Start/End: Original strand, 19268667 - 19268951
Alignment:
Q  31 aaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnn--gcctaatcataatc 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||         ||||||||| |||||         ||||||||| ||||    
T  19268667 aaaatgtcatagaaatacgaaaatgtacggaacatgtcataattatacatcaccatcatcatagtcaaaaaatacataaaaaaaaagcctaatcagaatc 19268766  T
Q  120 aaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggac 219  Q
    |||||||||||||| ||||||||  |||||||| |||||||||||||||||||||| ||  |||||||||||||| ||||||| | |||||||| |||||    
T  19268767 aaccctgctgcctaccatgcctctgccccctgcgccgcctggcaatctgatacgtatgggcagggcgaccagtactggctatctgaatcacctcttggac 19268866  T
Q  220 aatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 304  Q
    ||||||||||||| |||||||  | | ||| ||||||||||||||| |||||||||||||||| | ||| ||||| |||||||||    
T  19268867 aatctcctctttaatcatctcgtcgttccttgccacaatatcatcagctatatgcaccacatctcagatgatcgtcagtgtgtca 19268951  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 2946241 - 2946159
Alignment:
Q  224 tcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 306  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||    
T  2946241 tcctctttagtcatctcggcttgcctggccacaatatcatcaactatatgcaccacatcccggatgattgtcagtgtgtcagg 2946159  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 106 - 288
Target Start/End: Complemental strand, 23058828 - 23058643
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaagg---atagggcgaccagtaccggctatc 202  Q
    ||||||| | ||||||||||||||||||  |||||||  || ||||| |  ||||| |||| |||||||||||     |||||||||||||  | | |||    
T  23058828 gcctaataagaatcaaccctgctgcctacgatgcctctgccacctgcgctacctggaaatccgatacgtaagggcagcagggcgaccagtagtgccaatc 23058729  T
Q  203 cgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggat 288  Q
    || | |||||| || |||||||||||||||||||||||| |   | ||||||||||||||||| |||| ||||||||||| |||||    
T  23058728 cgaaacacctcatgaacaatctcctctttagtcatctcaccgctcatggccacaatatcatcagctatctgcaccacatctcggat 23058643  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 2946360 - 2946286
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac 83  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  2946360 aataatataaaaggtatgtcgggaaatgtcatagaaataccaaaatatacggaacatgtcataattatatatcac 2946286  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 33522390 - 33522512
Alignment:
Q  183 ggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatc 282  Q
    |||||| ||||||| |||| ||||| |||||||||| |||||||| |||||||   || || |  ||||| |||||||||||| ||||||||||||||||    
T  33522390 ggcgactagtaccgactattcgcataacctcctggaaaatctcctttttagtcccgtcggcctttctggcaacaatatcatcagctatatgcaccacatc 33522489  T
Q  283 ccggatcatcgttagtgtgtcag 305  Q
     ||||| ||| | | ||||||||    
T  33522490 tcggatgatcttcaatgtgtcag 33522512  T

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Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 54602448 - 54602748
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaa-gtacatnnnnnnngc 107  Q
    ||||||||||| ||||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||              
T  54602448 aataatataaaaggtatgtcagaaaatgtcatacaaataccaaaatgtatggaacatgtcataattatacatcacagtaaaaaaagtacaaaaaaaaaaa 54602547  T
Q  108 c--taatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    |  ||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||  |||||||||||||||  | ||| ||    
T  54602548 ccttaattttaatcaaccctgctgcctagcatgcctcggccccctgcgccgcctggcaatctaatacgtaagggcagggcgaccagtaccaacaatctgc 54602647  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||  |||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||    
T  54602648 atcacctcctggacaatttcctctttagtcatctcggcttgcctaaccacaatatcgtcagctatatgcaccacatcccggatgatcgtcagtgtgtcag 54602747  T
Q  306 g 306  Q
    |    
T  54602748 g 54602748  T

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Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 10 - 301
Target Start/End: Original strand, 12024778 - 12025078
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnn 100  Q
    ||||||||||| ||||||||| ||||||||||| |||||  ||||||||  ||||||||||||||||||||||||        |||||||||||||||      
T  12024778 aataatataaaaggtatgtcggaaaatgtcatataaataaaaaaatgtatagaacatgtcataattatacatcaccatgatcaagtcaaaaagtacataa 12024877  T
Q  101 nnnnngcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggcta 200  Q
          |||||||||| | |||| |||| ||| |||||||||| |||||||  |||||||| ||||||||||||||||  ||||||||||||||||| ||    
T  12024878 aaaaatcctaatcatagttaaccatgcttcctggcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccgggta 12024977  T
Q  201 tccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||| ||| | |||||    
T  12024978 tccgcatcacctcctggacaatctcctctttagtcatctcggctttcctggccacaatatcgtcatctatatgcaccacatctcggatgatcatcagtgt 12025077  T
Q  301 g 301  Q
    |    
T  12025078 g 12025078  T

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Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 106 - 304
Target Start/End: Original strand, 39388810 - 39389008
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    |||||||||||||||||||| |||||||||||||||   |||||| | || ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  39388810 gcctaatcataatcaaccctactgcctagcatgccttagccccctacgccacctggcaatctgatacgtaaggtcagggcgaccagtaccggctatccgc 39388909  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 304  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||||  |||||| |||||||||||||| ||||| |||||||||    
T  39388910 atcacctcctgaacaatctcctctttagtcatcccggcttgcctgaccacaatatcatcagttatatgtaccacatcccggatgatcgtcagtgtgtca 39389008  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 305
Target Start/End: Original strand, 16347123 - 16347272
Alignment:
Q  156 gcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccac 255  Q
    ||||||||||| |||| ||||||  | |||||||||||  | | ||||  ||||||||||| |||||||||||||||||||||||  |   |||||||||    
T  16347123 gcctggcaatccgatatgtaagggcaaggcgaccagtagtgccaatccaaatcacctcctgaacaatctcctctttagtcatctcgccgctcctggccac 16347222  T
Q  256 aatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||||||||| |||| ||||||| || |||||| ||||| ||||||||||    
T  16347223 aatatcatcagctatctgcaccatattccggatgatcgtcagtgtgtcag 16347272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 39388699 - 39388773
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcac 83  Q
    ||||||||||| |||| |||  |||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  39388699 aataatataaaaggtacgtccgaaaatgtcatagaaataagaaaatgtacgaaacatgtcataattatacatcac 39388773  T

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Target: scaffold1043 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 106 - 305
Target Start/End: Original strand, 2965 - 3164
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  2965 gcctaatcataatcaaccctgttgcctagcacgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggatatccgc 3064  T
Q  206 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||| | ||| | ||||||||||||||    
T  3065 atcacctcctggacaatctcctctttagtcatctcggtttgcctggctacaatatcatcagctatatgcaccacatctcagatgaccgttagtgtgtcag 3164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 2845 - 2923
Alignment:
Q  10 aataatataaa-ggtatgtcgtaaaatgtcatagaaat----accaaaatgtacggaacatgtcataattatacatcac 83  Q
    ||||||||||| ||||||||| ||||||||||||||||    |  ||||||||||||||||||||||||||||||||||    
T  2845 aataatataaaaggtatgtcgaaaaatgtcatagaaataaaaaaaaaaatgtacggaacatgtcataattatacatcac 2923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 45738 - 45589
Alignment:
Q  156 gcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccac 255  Q
    ||||||||||| |||| ||||||  | |||||||||||  | | ||||  ||||||||||| |||||||||||||||||||||||  |   |||||||||    
T  45738 gcctggcaatccgatatgtaagggcaaggcgaccagtagtgccaatccaaatcacctcctgaacaatctcctctttagtcatctcgccgctcctggccac 45639  T
Q  256 aatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 305  Q
    |||||||||| |||| ||||||| || |||||| ||||| ||||||||||    
T  45638 aatatcatcagctatctgcaccatattccggatgatcgtcagtgtgtcag 45589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 5552 - 5433
Alignment:
Q  106 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 205  Q
    ||||||| ||||||| |||||||||||| | ||||||  |||||||| |||||| ||||||| ||| ||||||  |||||||| |||||  |||||||||    
T  5552 gcctaataataatcagccctgctgcctaccttgcctctgccccctgcgccgcctagcaatctaataagtaagggcagggcgactagtactagctatccgc 5453  T
Q  206 atcacctcctggacaatctc 225  Q
    |||||||||||||| |||||    
T  5452 atcacctcctggacgatctc 5433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 29445 - 29320
Alignment:
Q  115 taatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcc 214  Q
    |||| ||||||||||||||  ||||||   |||||||  | || || ||||||||||| |||||  |||||||||||||| | | ||||| |||| ||||    
T  29445 taattaaccctgctgcctacgatgcctatgccccctgtgctgcatgacaatctgatacataagggcagggcgaccagtactgccaatccggatcatctcc 29346  T
Q  215 tggacaatctcctctttagtcatctc 240  Q
    || || | ||||||||||||||||||    
T  29345 tgcacgagctcctctttagtcatctc 29320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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