View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_92 (Length: 334)
Name: NF0856_high_92
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_92 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 1119752 - 1119461
Alignment:
| Q |
30 |
ttacatttgctaaagtaatatctataaaagaaaaaattattttctaaagtactacccgcactaattcacaatttcctctcaactatttatgcagctatta |
129 |
Q |
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| T |
1119752 |
ttacatttgctaaagtaatatctataaaagaaaaaattattttctaaagtactacccgcactaattcacaatttcctctcaactatttatgcagctatta |
1119653 |
T |
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| Q |
130 |
tcgacttgtcgtaatagacccaccaacaggacacacaaaaacttcatcctttgagagtgtgttgttgaaacgtggcatgtatttatgctaatctgttgag |
229 |
Q |
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| T |
1119652 |
tcgacttgtcgtaatagacccaccaacaggacacacaaaaacttcatcctttgagagtgtgttgttgaaacgtggcatgtatttatgctaatctgttgag |
1119553 |
T |
|
| Q |
230 |
caatcaatagtgttataatattcgtcagtctattgaaaaagaagattacctaagtcatattatcttttaaaaacatgcgcaagattcatctc |
321 |
Q |
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| T |
1119552 |
caatcaatagtgttataatattcgtcagtctattgaaaaagaagcttacctaagtcatattatcttttaaaaacatgcgcaagattcatctc |
1119461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 166 - 321
Target Start/End: Complemental strand, 1112394 - 1112239
Alignment:
| Q |
166 |
aaaaacttcatcctttgagagtgtgttgttgaaacgtggcatgtatttatgctaatctgtt---gagcaatcaatagtgttataatattcgtcagtctat |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |||||||||||||||||||| ||| ||||||||| |
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| T |
1112394 |
aaaaacttcatcctttgagagtgtgttgttgaaacgtggcatatatttatgctaacctcttcttgagcaatcaatagtgttata---ttcatcagtctat |
1112298 |
T |
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| Q |
263 |
tgaaaaagaagattacctaagtcatattatcttttaaaaacatgcgcaagattcatctc |
321 |
Q |
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| T |
1112297 |
tgaaaaagaagctcacctaagtcattttatcttttaaaaacatgctcaagattcatctc |
1112239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 1113071 - 1112943
Alignment:
| Q |
30 |
ttacatttgctaaagtaatatctataaaagaaaaaattattttctaaagtacta----cccgcactaattcacaatttcctctcaactatttatgcagct |
125 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || ||||||||||| ||| |||| ||| |||||||||||||| |
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| T |
1113071 |
ttacatttgctaaagtactatctataaaagaaaaaattatttgctaaagtactagctacctgcactaattcataatatcctatcatctatttatgcagct |
1112972 |
T |
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| Q |
126 |
attatcgacttgtcgtaatagacccacca |
154 |
Q |
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|||||| |||||||||||||||||||||| |
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| T |
1112971 |
attatcaacttgtcgtaatagacccacca |
1112943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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