View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_1 (Length: 1089)
Name: NF0856_low_1
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 30 - 675
Target Start/End: Original strand, 4649823 - 4650481
Alignment:
| Q |
30 |
catcattgatgaatctcgtttaccacttgaactcaattgtttgattaaggaaccaattttctattcggaataagaa-----------tttataattaaaa |
118 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
4649823 |
catcattgatgaagctcgtttaccacttgaactcaattgtttggttaagggaccaattttctattcggaataagaacatacatgcaatttataattaaaa |
4649922 |
T |
|
| Q |
119 |
ccacaaaattaagagaaagctatgtaacatgattaattttattcaattcaagaacataaaagttagctagcttgaaatggattacatgataggaatattt |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4649923 |
ccacaaaattaagagaaagctatgtaacatgattaattttattcaattcaagaacataaaagttagctagcttgaaatggattacatgataggaatattt |
4650022 |
T |
|
| Q |
219 |
ccatatagaacaaaagatcaataatgatccattaagcaaatagctagctaattattctttaagcatagagagattaatcaagcaatgtagtaaagaggat |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650023 |
ccatatagaacaaaagatcaataatgatccattaagcaattagctagctaattattctttaagcatagagagattaatcaagcaatgtagtaaagaggat |
4650122 |
T |
|
| Q |
319 |
cagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctccatccttcttcttcaagctt |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650123 |
cagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctccatccttcttcttcaagctt |
4650222 |
T |
|
| Q |
419 |
ctttctctcagatgatttgtattgaactgcagttttaccatgatataattctgtatccctgcaaccataaatttgaaattaatacaattttttatttatg |
518 |
Q |
| |
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| T |
4650223 |
ctttctctcagatgatttgtattgaactgcagttttaccatgatataattctgtatccctgcaaccataaatttgaaattaatacaattttttatttatg |
4650322 |
T |
|
| Q |
519 |
tgccaacaaaacgtacgtgttaataattgacatgcccctcacacatcacctaatatgtccnnnnnnnnngtagttacctaatatgtccttttcaggtttt |
618 |
Q |
| |
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| T |
4650323 |
tgccaacaaaacgtacgtgttaataattgacatgcccctcacacatcacctaatatgtcc-ttttttttgtagttacctaatatgtccttttcaggttgt |
4650421 |
T |
|
| Q |
619 |
atatgtcagcaataattcacctagtttatttattt---ttactgaaataattcacctagc |
675 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4650422 |
atatgtcagcaataattcacctagtttatttatttttattactgaaataattcacctagc |
4650481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 768 - 1013
Target Start/End: Original strand, 4650570 - 4650815
Alignment:
| Q |
768 |
atcatgacattgaatatactctattgtaaatatagaaggttatgactcataattccaattactttctcctatgaacaattaattaatgttagaaaactta |
867 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4650570 |
atcatgacattgaatatactctattgtaaatatagaaggttatgactcataattccaattactttctcctatgaacaattaattaatgttagaaaactta |
4650669 |
T |
|
| Q |
868 |
cttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatc |
967 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650670 |
cttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatc |
4650769 |
T |
|
| Q |
968 |
ttaacaccaagatttaccagtttgttgtacaatttttgtgtctctg |
1013 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650770 |
ttaacaccaagatttaccagtttgttgtacaatttttgtgtctctg |
4650815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 104 - 464
Target Start/End: Complemental strand, 23682337 - 23681988
Alignment:
| Q |
104 |
aatttataattaaaaccacaaaattaagagaaagctat-------gtaacatgattaattttattcaattcaagaacataaaagttagctagcttgaaat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | ||||| |
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| T |
23682337 |
aatttataattaaaaccacaaaattaagagaaagctatttcttatgtaacatgattaattttattcaa-----gaacata-------------tcgaaat |
23682256 |
T |
|
| Q |
197 |
ggattacatgataggaatatttccatatagaacaaaagatcaataatgatccattaagcaaatagctagctaattattctttaagcatagagagattaat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23682255 |
ggattacatgataggaatatttccatatagaacaaaagatcaataat---ccattaggcaaatagctagctaattattctttaagcatagagagattaat |
23682159 |
T |
|
| Q |
297 |
caagcaatgtagta---aagaggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataa |
393 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23682158 |
caagcaatgtagtagtaaagaggatcagggagtttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactatttccaataa |
23682059 |
T |
|
| Q |
394 |
ttctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
23682058 |
ttctccatccttcttcttcaagcttctttctctcagatgatttgtattgaaatgctattttaccatgatat |
23681988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 300 - 465
Target Start/End: Original strand, 4645810 - 4645975
Alignment:
| Q |
300 |
gcaatgtagtaaagaggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctcc |
399 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||| |
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| T |
4645810 |
gcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtattggttccaagaatatcactccattgatctccaatgtttccaacaattctgt |
4645909 |
T |
|
| Q |
400 |
atccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatata |
465 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
4645910 |
atccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatata |
4645975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 848 - 924
Target Start/End: Complemental strand, 23680759 - 23680683
Alignment:
| Q |
848 |
aattaatgttagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgt |
924 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
23680759 |
aattaatgttagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttgtttcaagttcttagctgt |
23680683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 918 - 1013
Target Start/End: Complemental strand, 23679594 - 23679499
Alignment:
| Q |
918 |
tagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatcttaacaccaagatttaccagtttgttgtacaatttttgtgtctctg |
1013 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23679594 |
tagccgtaatgtccttctgtttgagtggtcttcctgttaagaacacaaatttgacaccaagatttaccagtttgttgtacaatttttgtgtctctg |
23679499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 539 - 674
Target Start/End: Complemental strand, 23681528 - 23681394
Alignment:
| Q |
539 |
taataattgacatgcccctcacacatcacctaatatgtccnnnnnnnnngtagttacctaatatgtccttttcaggttttatatg-tcagcaata-attc |
636 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||| |||| |
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|
| T |
23681528 |
taataattgacatgtccctcaca--tcacctaatatgtcctttttttt-gtagttacctaatatgtccttttcagtttgaatatggtcagcaatttattc |
23681432 |
T |
|
| Q |
637 |
acctagtttatttatttttactgaaataattcacctag |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
23681431 |
acctagtttatttatttttactgaaataattcacctag |
23681394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 909 - 1004
Target Start/End: Original strand, 4646346 - 4646441
Alignment:
| Q |
909 |
tcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatcttaacaccaagatttaccagtttgttgtacaattttt |
1004 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||| | ||||||| | || ||| ||||||||||||| |
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|
| T |
4646346 |
tcaagttcttagctgtaatttctttctgtttgagtggtctgcctgttaagaacgcaatcttgataccaagagacaacaatttattgtacaattttt |
4646441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 372 - 493
Target Start/End: Original strand, 41872254 - 41872375
Alignment:
| Q |
372 |
tggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatataattctg |
471 |
Q |
| |
|
|||||||| |||||||||| ||| | |||||||||| || |||||||||||||| || ||||||||| |||||| |||||||||||||||| | || |
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|
| T |
41872254 |
tggtctcctatgtttccaatgattttgtatccttcttcctccagcttctttctctctgacgatttgtatgtaactgctgttttaccatgatatattgatg |
41872353 |
T |
|
| Q |
472 |
tatccctgcaaccataaatttg |
493 |
Q |
| |
|
|||||||| |||| ||||||| |
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|
| T |
41872354 |
tatccctgagaccacaaatttg |
41872375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 857 - 979
Target Start/End: Original strand, 41872538 - 41872660
Alignment:
| Q |
857 |
tagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgtta |
956 |
Q |
| |
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|||||||||||||| ||||||| ||||| ||| ||||||||||| | |||| ||||| ||||| |||| |||||||||| || |||||| |||| |
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| T |
41872538 |
tagaaaacttacttgcaaattagtttttcccgtgtatggtagccagcaagtctcaaattcttggctgttatgttcttctgtttgtttgctcttccagtta |
41872637 |
T |
|
| Q |
957 |
agaatgcaatcttaacaccaaga |
979 |
Q |
| |
|
||||| ||||||| | ||||||| |
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|
| T |
41872638 |
agaatacaatcttgataccaaga |
41872660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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