View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_100 (Length: 347)

Name: NF0856_low_100
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_100
NF0856_low_100
[»] chr3 (5 HSPs)
chr3 (8-347)||(33990700-33991039)
chr3 (49-79)||(1116401-1116431)
chr3 (45-82)||(4216083-4216120)
chr3 (27-80)||(35335587-35335640)
chr3 (49-85)||(2452426-2452462)
[»] chr5 (3 HSPs)
chr5 (261-329)||(18855231-18855299)
chr5 (47-83)||(6760514-6760550)
chr5 (14-62)||(9897920-9897968)
[»] chr4 (3 HSPs)
chr4 (23-65)||(7367535-7367577)
chr4 (261-331)||(42868453-42868523)
chr4 (28-76)||(43843634-43843682)
[»] chr1 (2 HSPs)
chr1 (23-83)||(3523373-3523433)
chr1 (34-76)||(52156777-52156819)
[»] chr7 (2 HSPs)
chr7 (11-66)||(41775203-41775258)
chr7 (45-83)||(438696-438734)
[»] chr8 (2 HSPs)
chr8 (11-65)||(14227192-14227246)
chr8 (23-83)||(11556961-11557021)
[»] chr6 (4 HSPs)
chr6 (48-81)||(4323114-4323147)
chr6 (38-75)||(32926315-32926352)
chr6 (47-83)||(29236264-29236300)
chr6 (46-82)||(32921007-32921043)
[»] chr2 (1 HSPs)
chr2 (49-85)||(15804118-15804154)


Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 33990700 - 33991039
Alignment:
Q  8 cagcacagacactggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaaaccattggtcagtgtcatacacca 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  33990700 cagcacatacactggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgcttaaatgtaaaccatgggtcagtgtcatacacca 33990799  T
Q  108 gaatccagatatgttcagtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990800 gaatccagatatgttcagtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctata 33990899  T
Q  208 taaagacgttgaaatttctgagaccaagaaggttgctggactaaaaggtaaactgaataaggttgttctggcttatagtggtggcttagacacatcggtt 307  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33990900 taaagacgtagaaatttctgagaccaagaaggttgctggactaaaaggtaaattgaataaggttgttctggcttatagtggtggcttagacacatcggtt 33990999  T
Q  308 gttgtcccctggctgaggtatataaatattattttatttt 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33991000 gttgtcccctggctgaggtatataaatattattttatttt 33991039  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 1116401 - 1116431
Alignment:
Q  49 taataatttgagaaaattgaagtgattaaat 79  Q
    |||||||||||||||||||||||||||||||    
T  1116401 taataatttgagaaaattgaagtgattaaat 1116431  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 4216120 - 4216083
Alignment:
Q  45 ccaataataatttgagaaaattgaagtgattaaatgta 82  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  4216120 ccaataataattaaagaaaattgaagtgattaaatgta 4216083  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 35335587 - 35335640
Alignment:
Q  27 gacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatg 80  Q
    |||||| |||||||||| | | |||||||||||||||||  |||||||||||||    
T  35335587 gacactgacacatagacactagtaataatttgagaaaatgaaagtgattaaatg 35335640  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 2452426 - 2452462
Alignment:
Q  49 taataatttgagaaaattgaagtgattaaatgtaaac 85  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  2452426 taataatttcagaaaattgaagtgattcaatgtaaac 2452462  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 18855299 - 18855231
Alignment:
Q  261 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtata 329  Q
    |||||||||||||  ||||||| || ||||||||||||||||||||  ||||||| |||||||||||||    
T  18855299 tgaataaggttgtattggcttacagcggtggcttagacacatcggtcattgtcccatggctgaggtata 18855231  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 6760550 - 6760514
Alignment:
Q  47 aataataatttgagaaaattgaagtgattaaatgtaa 83  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6760550 aataataatttgagaaaatttaagtgattaaatgtaa 6760514  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 9897968 - 9897920
Alignment:
Q  14 agacactggacacgacactaacacatagacgccaataataatttgagaa 62  Q
    |||||| ||||||| |||| |||||| ||| ||||||||||||||||||    
T  9897968 agacaccggacacggcactcacacatcgacaccaataataatttgagaa 9897920  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 7367535 - 7367577
Alignment:
Q  23 acacgacactaacacatagacgccaataataatttgagaaaat 65  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7367535 acacgacactaacacatagacaccaataataatttgagaaaat 7367577  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 42868523 - 42868453
Alignment:
Q  261 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtatata 331  Q
    ||||||||||||| || ||||| |||||||||||||||||||| ||  ||||||| ||| |||||||||||    
T  42868523 tgaataaggttgtacttgcttacagtggtggcttagacacatcagtcattgtcccatggttgaggtatata 42868453  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 43843682 - 43843634
Alignment:
Q  28 acactaacacatagacgccaataataatttgagaaaattgaagtgatta 76  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||||    
T  43843682 acactaacacgtagacaccaataataatttgagaaaataaaagtgatta 43843634  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 3523373 - 3523433
Alignment:
Q  23 acacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaa 83  Q
    |||||||||| |||| ||||| || |||||||||||| ||||| ||||||||| |||||||    
T  3523373 acacgacactgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 52156819 - 52156777
Alignment:
Q  34 acacatagacgccaataataatttgagaaaattgaagtgatta 76  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  52156819 acacatagacgctaataataacttgagaaaatggaagtgatta 52156777  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 41775203 - 41775258
Alignment:
Q  11 cacagacactggacacgacactaacacatagacgccaataataatttgagaaaatt 66  Q
    ||||||||| |||||||||||||| |||| | | || |||||||||||||||||||    
T  41775203 cacagacaccggacacgacactaagacatggccaccgataataatttgagaaaatt 41775258  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 438734 - 438696
Alignment:
Q  45 ccaataataatttgagaaaattgaagtgattaaatgtaa 83  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  438734 ccaataataatttaagaaaattgaagtaattaaatgtaa 438696  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 14227192 - 14227246
Alignment:
Q  11 cacagacactggacacgacactaacacatagacgccaataataatttgagaaaat 65  Q
    ||||||||||||||||| |||| |||| |  || |||||||||||||||||||||    
T  14227192 cacagacactggacacgtcactgacacgtcaacaccaataataatttgagaaaat 14227246  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 11557021 - 11556961
Alignment:
Q  23 acacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaa 83  Q
    |||| |||||||||  ||||| ||  |||||||||||||||||| |||||||| |||||||    
T  11557021 acacaacactaacatgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaa 11556961  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 4323114 - 4323147
Alignment:
Q  48 ataataatttgagaaaattgaagtgattaaatgt 81  Q
    |||| |||||||||||||||||||||||||||||    
T  4323114 ataacaatttgagaaaattgaagtgattaaatgt 4323147  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 32926352 - 32926315
Alignment:
Q  38 atagacgccaataataatttgagaaaattgaagtgatt 75  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  32926352 atagacaccaataataatttaagaaaattgaagtgatt 32926315  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 29236264 - 29236300
Alignment:
Q  47 aataataatttgagaaaattgaagtgattaaatgtaa 83  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  29236264 aataataatttgagaaaatagaagtgattgaatgtaa 29236300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 32921043 - 32921007
Alignment:
Q  46 caataataatttgagaaaattgaagtgattaaatgta 82  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  32921043 caataataatttaagaaaattgaagtgatttaatgta 32921007  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 15804154 - 15804118
Alignment:
Q  49 taataatttgagaaaattgaagtgattaaatgtaaac 85  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  15804154 taataatttgagaaaatggaagtgattgaatgtaaac 15804118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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