View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_101 (Length: 345)
Name: NF0856_low_101
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_101 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 103 - 254
Target Start/End: Original strand, 43387077 - 43387229
Alignment:
| Q |
103 |
cattgactaagagtaatt-accttgagtatggactattcttgacagacttctttccatacttcctccatttgtatccatcatccataatctcaagctgcg |
201 |
Q |
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| T |
43387077 |
cattgaccaagagtaatttaccttgggtatggactattcttgacagacttctttccatacttcctccatttgtatccatcatccataatctcaagctgcg |
43387176 |
T |
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| Q |
202 |
atctcgttctaaacgtaacccttgggctcacatctactgtattttccttcatc |
254 |
Q |
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| T |
43387177 |
atctcgttctaaacgtaacccttgggctcacatctactgtattttccttcatc |
43387229 |
T |
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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 38400334 - 38400416
Alignment:
| Q |
132 |
ggactattcttgacagacttctttccatacttcctccatttgtatccatcatccataatctcaagctgcgatctcgttctaaa |
214 |
Q |
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| T |
38400334 |
ggactgttcttcacggacttcttcccgtacttcctccacttgtatccatcatccataatctcaagctctgatcttgttctaaa |
38400416 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 38301605 - 38301540
Alignment:
| Q |
116 |
taattaccttgagtatggactattcttgacagacttctttccatacttcctccatttgtatccatc |
181 |
Q |
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| T |
38301605 |
taattacctagggtatggactattcttaacagctttctgtccatattttctccatctgtatccatc |
38301540 |
T |
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