View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_103 (Length: 344)
Name: NF0856_low_103
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_103 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 38 - 334
Target Start/End: Original strand, 48526791 - 48527087
Alignment:
| Q |
38 |
ataccaattttgctttgttgaggagacgacgagcatatttacgatcagtatgtctaaaaacaatggaagaagaagccatagctgcagccgtttcagaagc |
137 |
Q |
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| T |
48526791 |
ataccaattttgctttgttgaggagacgacgagcatatttacgatcagtatgtctaaaaacaatggaagaagaagccatagctgcagccgtttcagaagc |
48526890 |
T |
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| Q |
138 |
aatctcactaccgggtgtgttactatcaatgactttaaccgatctttttgtcttcattttttctggtggagcccaacaatgatgatcttcctctgggtcc |
237 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48526891 |
aatctcactaccaggtgtgttactatcaatgactttaaccgatctttttgtcttcattttttctggtggagcccaacaatgatgatcttcctctgggtcc |
48526990 |
T |
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| Q |
238 |
cctacctcaacatataatttgtttcttctacaactagcttttaaaaaataatctgttccccatttgattgcatcttgaatatttcccatttcctttg |
334 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48526991 |
cctacctcaacatataatttgtttcttctagaactagcttttaaaaaataatctgttccccatttgattgcatcttgaatatttcccatttcctttg |
48527087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 37 - 329
Target Start/End: Original strand, 7222175 - 7222467
Alignment:
| Q |
37 |
cataccaattttgctttgttgaggagacgacgagcatatttacgatcagtatgtctaaaaacaatggaagaagaagccatagctgcagccgtttcagaag |
136 |
Q |
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||||||||||||||||| ||||||||||| |||| |||||| ||||| ||| ||||||||||||||||||| ||||||||| |||| ||||||| | |
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| T |
7222175 |
cataccaattttgctttattgaggagacggcgagaatatttgggatcaacatgcctaaaaacaatggaagaagcagccatagcagcagaagtttcagctg |
7222274 |
T |
|
| Q |
137 |
caatctcactaccgggtgtgttactatcaatgactttaaccgatctttttgtcttcattttttctggtggagcccaacaatgatgatcttcctctgggtc |
236 |
Q |
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| T |
7222275 |
caatctcagtgccaggtgtgttactatcaattaatttaactgttctctttgtcttcatattttccggtggtgcccaacaatggtgatcatcaactgggtc |
7222374 |
T |
|
| Q |
237 |
ccctacctcaacatataatttgtttcttctacaactagcttttaaaaaataatctgttccccatttgattgcatcttgaatatttcccatttc |
329 |
Q |
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||||||||| ||||||||| | |||||| |||||| ||| | ||||||||| || |||||| | || |||| |||||||||||||||||| |
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| T |
7222375 |
ccctacctctacatataatctatttctttgggaactagttttcagaaaataatcagtaccccatctaatggcattttgaatatttcccatttc |
7222467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 255
Target Start/End: Complemental strand, 50305553 - 50305342
Alignment:
| Q |
44 |
attttgctttgttgaggagacgacgagcatatttacgatcagtatgtctaaaaacaatggaagaagaagccatagctgcagccgtttcagaagcaatctc |
143 |
Q |
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|||||||||| || |||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||| ||||||| ||||||| |
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| T |
50305553 |
attttgctttattaaggagatgacgagcatatttacgatcaacatgtctaaaaacaatggaagaagtagccataacagcagaagtttcagctgcaatctt |
50305454 |
T |
|
| Q |
144 |
actaccgggtgtgttactatcaatgactttaaccgatctttttgtcttcattttttctggtggagcccaacaatgatgatcttcctctgggtcccctacc |
243 |
Q |
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| ||||||||||||||| ||||| | |||| | ||| ||||||||||| |||||||||| ||||||||| | ||||| || || ||||||||||| |
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| T |
50305453 |
aaaaccgggtgtgttactgtcaattaatttatatgttctctttgtcttcatactttctggtggtgcccaacaacggtgatcatcaactcggtcccctacc |
50305354 |
T |
|
| Q |
244 |
tcaacatataat |
255 |
Q |
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| |||||||||| |
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| T |
50305353 |
ttaacatataat |
50305342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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