View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_106 (Length: 337)

Name: NF0856_low_106
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_106
NF0856_low_106
[»] chr4 (1 HSPs)
chr4 (38-325)||(1959783-1960074)
[»] chr2 (8 HSPs)
chr2 (86-320)||(39748761-39748999)
chr2 (86-298)||(26978507-26978722)
chr2 (86-298)||(27020200-27020415)
chr2 (99-298)||(27087975-27088176)
chr2 (38-87)||(39748684-39748733)
chr2 (48-87)||(26978750-26978789)
chr2 (48-87)||(27020443-27020482)
chr2 (52-87)||(27087898-27087933)
[»] chr8 (2 HSPs)
chr8 (100-282)||(11632071-11632255)
chr8 (52-87)||(11632298-11632333)
[»] chr6 (2 HSPs)
chr6 (86-298)||(34680904-34681117)
chr6 (48-87)||(34681145-34681184)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 38 - 325
Target Start/End: Original strand, 1959783 - 1960074
Alignment:
Q  38 tgattaccttattctcaatctcaatggcttcatctcttaacttttctattgagcaatactacccatcctctaaattcctcttcatgtcctcttggccttc 137  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1959783 tgattaccttattctcaatttcaatggcttcatctcttaacttttctattgagcaatgctacccatcctctaaattcctcttcatgtcctcttggccttc 1959882  T
Q  138 ttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaacactcagaatgccttgatactacatcaatatgaccttccacattcttaacagt 237  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  1959883 ttttagttgtgattgtgatgttgcaatttgtgtagtttgctcataaacactcagaatgccttgatactacgtcagtatgaccttccgcattcttaacagt 1959982  T
Q  238 ttaagctactagttgggta----tgactattaacatattcatgagaatccaaaatttgttttgagtttttaatagatgttttgatttatctg 325  Q
    ||||||||||||||| |||    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  1959983 ttaagctactagttgtgtatgactgactattaacatattcatgagaattcaaaatttattttgagtttttaatagatgttttgatttatctg 1960074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 86 - 320
Target Start/End: Original strand, 39748761 - 39748999
Alignment:
Q  86 ttgagcaatactaccc-atcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 184  Q
    ||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  39748761 ttgagcaatgctaccccatcctctaaattccttttcatgttctcttggccttcttgcagttgtgattgcgatgttgcaatttttgtagtttgctcataaa 39748860  T
Q  185 ca--ctcagaatgccttgatactacatcaatatgaccttccacattcttaacagtttaagctactagttgggtatgactattaacatattcatgagaatc 282  Q
    ||  ||| |||||| || |||| || ||||||||||  ||||||||||| ||||||| |||||||||||| || |||||||||||| ||||| |||||||    
T  39748861 cactctcggaatgctttaataccacgtcaatatgactgtccacattctttacagtttgagctactagttgtgtgtgactattaacagattcaagagaatc 39748960  T
Q  283 caaaatttgttttgagt-ttttaatagatgttttgattt 320  Q
    | ||||||||||||||| |||||||||||||| ||||||    
T  39748961 cgaaatttgttttgagtcttttaatagatgttctgattt 39748999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 86 - 298
Target Start/End: Complemental strand, 26978722 - 26978507
Alignment:
Q  86 ttgagcaatactac-ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 184  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||| || ||| |||||||||| |||||||||||||||||| || ||||    
T  26978722 ttgagcaatgctacaccatcctctaacttcctcttcatgtcctcttgaccttcttctaattgcgattgtgatgctgcaatttttgtagtttgttcgtaaa 26978623  T
Q  185 cac--tcagaatgccttgatactacatcaatatgaccttccacattcttaacagtttaagctactagttgggtatgactattaacatattcatgagaatc 282  Q
    |||  || ||||||||| |||| ||||||||||||  ||| |||||||||||||||| ||| ||||| |  || |||||| ||||  ||||| |||||||    
T  26978622 cactttcggaatgccttaataccacatcaatatgagtttcaacattcttaacagtttgagcaactagctctgtgtgactactaaccgattcaagagaatc 26978523  T
Q  283 caaaatttgttttgag 298  Q
     ||||| |||||||||    
T  26978522 aaaaatctgttttgag 26978507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 298
Target Start/End: Complemental strand, 27020415 - 27020200
Alignment:
Q  86 ttgagcaatactac-ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 184  Q
    ||||||||| |||| ||||||||||| ||| |||||||||| ||||| |||||||  |||||||| || |||| |||||||||||| ||||| || ||||    
T  27020415 ttgagcaatgctacaccatcctctaacttcatcttcatgtcttcttgaccttcttcaagttgtgactgcgatgctgcaatttttgtcgtttgttcgtaaa 27020316  T
Q  185 cact--cagaatgccttgatactacatcaatatgaccttccacattcttaacagtttaagctactagttgggtatgactattaacatattcatgagaatc 282  Q
    ||||  |||| |||||| |||| ||||||||||||  ||| |||||||||||||||| ||| |||||||| || |||||||||||  ||||| |||||||    
T  27020315 cactttcagagtgccttaataccacatcaatatgagtttcaacattcttaacagtttgagcaactagttgtgtgtgactattaaccgattcaagagaatc 27020216  T
Q  283 caaaatttgttttgag 298  Q
     ||||| |||||||||    
T  27020215 aaaaatctgttttgag 27020200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 99 - 298
Target Start/End: Original strand, 27087975 - 27088176
Alignment:
Q  99 cccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaacac--tcagaatgc 196  Q
    |||||||||||| || ||||||||||||||||| ||||||| ||||||||| ||||||| || ||||||| | ||||| || |||||||  |  ||||||    
T  27087975 cccatcctctaattttctcttcatgtcctcttgaccttcttctagttgtgactgtgatgctgtaatttttttcgtttgttcgtaaacacttttggaatgc 27088074  T
Q  197 cttgatactacatcaatatgaccttccacattcttaacagtttaagctactagttgggtatgactattaacatattcatgagaatccaaaatttgttttg 296  Q
    ||| |||| ||||||||||||  ||| |||||||||||||||| ||| ||||| |  || |||||||||||  ||||| ||||||| ||||| | |||||    
T  27088075 cttaataccacatcaatatgagtttcaacattcttaacagtttgagcaactagctctgtgtgactattaaccgattcaagagaatcaaaaatatattttg 27088174  T
Q  297 ag 298  Q
    ||    
T  27088175 ag 27088176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 39748684 - 39748733
Alignment:
Q  38 tgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39748684 tgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 39748733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 26978789 - 26978750
Alignment:
Q  48 attctcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26978789 attctcaatctcaatggcttcatctcttaacttttctatt 26978750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 27020482 - 27020443
Alignment:
Q  48 attctcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  27020482 attctcaatctcaatggcttcctctcttaacttttctatt 27020443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 27087898 - 27087933
Alignment:
Q  52 tcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27087898 tcaatctcaatggtttcatctcttaacttttctatt 27087933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 100 - 282
Target Start/End: Complemental strand, 11632255 - 11632071
Alignment:
Q  100 ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaacac--tcagaatgcc 197  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||| |||||||  |||||||| |    
T  11632255 ccatcctctaatttcctcttcatgtcctcttgaccttcttctagttgtgattgcgatgctgcaatttttgtagtttgctcgtaaacactttcagaatgtc 11632156  T
Q  198 ttgatactacatcaatatgaccttccacattcttaacagtttaagctactagttgggtatgactattaacatattcatgagaatc 282  Q
    ||  ||| ||||||||||||  ||| |||||||| ||||||| |||||||||||| || |||||||||||  ||||| |||||||    
T  11632155 ttagtaccacatcaatatgagtttcaacattcttgacagtttgagctactagttgtgtgtgactattaactgattcaagagaatc 11632071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 11632333 - 11632298
Alignment:
Q  52 tcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||||||||||||||||||||||||||    
T  11632333 tcaatctcaatggcttcatctcttaacttttctatt 11632298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 86 - 298
Target Start/End: Complemental strand, 34681117 - 34680904
Alignment:
Q  86 ttgagcaatactac-ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 184  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||| || ||| |||||||||| |||||||||||||||||| |||||||    
T  34681117 ttgagcaatgctacaccatcctctaacttcctcttcatgtcctcttgaccttcttctaattgcgattgtgatgctgcaatttttgtagtttgttcataaa 34681018  T
Q  185 cac--tcagaatgccttgatactacatcaatatgaccttccacattcttaacagtttaagctactagttgggtatgactattaacatattcatgagaatc 282  Q
    |||  |  ||||||||| |||| ||||||||||||  ||| |||||||||||||||| ||| ||||| |  || |||||| ||||  ||||| |||||||    
T  34681017 cacttttggaatgccttaataccacatcaatatgagtttctacattcttaacagtttgagcaactagct--gtgtgactactaaccgattcaagagaatc 34680920  T
Q  283 caaaatttgttttgag 298  Q
     ||||| |||||||||    
T  34680919 aaaaatctgttttgag 34680904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 34681184 - 34681145
Alignment:
Q  48 attctcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34681184 attctcaatctcaatggcttcatctcttaacttttctatt 34681145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1882 times since January 2019
Visitors: 6151