View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_108 (Length: 335)
Name: NF0856_low_108
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_108 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 658126 - 658452
Alignment:
| Q |
9 |
gagatgaagtgagcatttaaaacctcaggaaagaggaaccttgccaaataacattagtttgaagaaaattcgtagtcagtcataccactaatatcacaaa |
108 |
Q |
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| T |
658126 |
gagatgaagtgagcatttaaaacctcaggaaagaggaaccttgccaaataacattagtttgaggaaaatttgtagtcacttataccactaatatcacaaa |
658225 |
T |
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| Q |
109 |
atcaatatctacaactgcttttgtcaacaacatttagttagtttaatatgcctaaaagattcaagaagatgctacaaagtagtctcggatagttctttat |
208 |
Q |
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| T |
658226 |
atcaatatctacaactgcttttgtcaacagcatttagttagtttaatatgcctaaaagattcaagaagatgctacaaagtagtctcggatagttctttat |
658325 |
T |
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| Q |
209 |
agggagggtgatgctaaactcatcattgttccctaacaatgcaatgtccagcaagttctgctataatagatacattttcatgtttcttcatttggttcca |
308 |
Q |
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| T |
658326 |
agggagggtgatgctaaactcatcattgttccctaacaatgcaatgtccagcaagttctgctacaatagatacattttcatgtttcttcatttggttcca |
658425 |
T |
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| Q |
309 |
aagatggatcaagagcaaacattcttt |
335 |
Q |
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| T |
658426 |
aagatggatcaagagcaaacattcttt |
658452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 660709 - 660795
Alignment:
| Q |
130 |
tgtcaacaacatttagttagtttaatatgcctaaaagattcaagaagatgctacaaagtagtctcggatagttctttatagggaggg |
216 |
Q |
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| T |
660709 |
tgtcaacaaaatttggttggtataatcttcctaaaggattcaagaagatgctacaaagtagtcccggatagttctctttagggaggg |
660795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 911203 - 911153
Alignment:
| Q |
166 |
gattcaagaagatgctacaaagtagtctcggatagttctttatagggaggg |
216 |
Q |
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| T |
911203 |
gattcaagaagatgctacaaagtagtcccggatagttctctttagggaggg |
911153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 36660945 - 36661031
Alignment:
| Q |
237 |
ttccctaacaatgcaatgtccagcaagttctgctataatagatacattttca--tgtttcttcatttggttccaaagatggatcaag |
321 |
Q |
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| T |
36660945 |
ttccctagcagtgcagtgtccagcaagttctgctacaatagttatactttcatgtgtttcgtcgtttggttccaaagctggatcaag |
36661031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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