View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_11 (Length: 695)
Name: NF0856_low_11
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 588
Target Start/End: Complemental strand, 12488394 - 12487826
Alignment:
| Q |
20 |
cacttggagtttttgaatatcaatggtttctgattctgagtttgtagttctataacagaacactacgtgacttaagtcacattgatatatactaaacatg |
119 |
Q |
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| T |
12488394 |
cacttgaagtttttgaatatcaatggtttctgtttctgaatttgtagttctataacataacactacatgacttaagtcacgttgatatgtactaaacgtg |
12488295 |
T |
|
| Q |
120 |
aattaactcatactgattcaatgtaacttaaattacgctgatactatgaacgtgatttaagtcacatagagatagcttcggtactttctacgagaatgag |
219 |
Q |
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| T |
12488294 |
aattaattcacaccgattcaatgtaacttaaattacgctgatgctatgaatgtgatttaagtcacatagagatactttcggtactttcctggagaatgag |
12488195 |
T |
|
| Q |
220 |
caaaagttaattgaagaagaacaatttttcaatttgaatgatcttcaaactcttgtcatgaccaagtacaatacaaccccacttgtgttgtttgtaaagn |
319 |
Q |
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| T |
12488194 |
caaaagttaatagaagaagaacaattttccaatttgaatgatcttgaaactcttgtcatgaccaagtacaatacaaccccacttgtgttgttagtaaaga |
12488095 |
T |
|
| Q |
320 |
nnnnnncaatcacatacgctccctccaagtacaagacagattcctcatccccaccatagaaaaatacatacgttgcttcataaaacatgagtggcatctt |
419 |
Q |
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| T |
12488094 |
aaaaaacaatcacatacgctccctccaattacaagacagattcctcatccccaccatagaaaaatacatacgttgcttcataaaacatgagtggcatctt |
12487995 |
T |
|
| Q |
420 |
cgcaatttcaccacaaatcaatgtcaaacatattcaaattcaaaacagtgaacacagttctaagatcttcataaataatccatccacttcacacacgtgt |
519 |
Q |
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| T |
12487994 |
cgcaatttcaccacaaatcaatgtcaaacatattcaaattcaaaacagtgaacacagttctaagatcttcataaataatctatccacttcacacacgtgt |
12487895 |
T |
|
| Q |
520 |
gatttcaaacctattttgaaaagtattaccctaccccacatgacacgtgtcacttttcttcatctcatc |
588 |
Q |
| |
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| T |
12487894 |
gatttcaaacctattttgaaaagtattaccctaccccacatgacacgtgtcacttttctccatctcatc |
12487826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 614 - 666
Target Start/End: Complemental strand, 12487776 - 12487724
Alignment:
| Q |
614 |
ccttagcattttcaaattttaactaatcccaacggtaacgtttctatcttaaa |
666 |
Q |
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| T |
12487776 |
ccttagcattttcaaattttaactaatcccaacggtaacgtttctgtcttaaa |
12487724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 17075308 - 17075252
Alignment:
| Q |
46 |
tttctgattctgagtttgtagttctataacagaacactacgtgacttaagtcacatt |
102 |
Q |
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| T |
17075308 |
tttctaattatgagtttgcaattctataacagaacgctacgtaacttaagtcacatt |
17075252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 14478866 - 14478945
Alignment:
| Q |
31 |
tttgaatatcaatggt---ttctgattctgagtttgtagttctataacagaacactacgtgacttaagtcacattgatat |
107 |
Q |
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|||||||||||||||| ||||| ||||| ||||| ||||||||||| || | |||||||||||||||| ||||||| |
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| T |
14478866 |
tttgaatatcaatggtggtttctgtttctgggtttgctattctataacagcacgcaacgtgacttaagtcacgttgatat |
14478945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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