View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_111 (Length: 332)

Name: NF0856_low_111
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_111
NF0856_low_111
[»] chr8 (1 HSPs)
chr8 (202-322)||(19962380-19962499)
[»] chr7 (6 HSPs)
chr7 (5-153)||(1971209-1971365)
chr7 (250-322)||(1971415-1971487)
chr7 (5-172)||(37362401-37362555)
chr7 (94-147)||(7841460-7841512)
chr7 (5-46)||(7841407-7841448)
chr7 (215-255)||(1971360-1971400)
[»] chr4 (14 HSPs)
chr4 (69-168)||(41810349-41810445)
chr4 (8-68)||(14209362-14209420)
chr4 (8-68)||(14210313-14210371)
chr4 (8-68)||(14211282-14211340)
chr4 (8-68)||(14212233-14212291)
chr4 (8-68)||(14214170-14214228)
chr4 (8-68)||(14215139-14215197)
chr4 (8-68)||(14216108-14216166)
chr4 (8-68)||(14217059-14217117)
chr4 (8-68)||(14218010-14218068)
chr4 (8-68)||(14219949-14220007)
chr4 (8-68)||(14220900-14220958)
chr4 (8-68)||(14221869-14221927)
chr4 (8-68)||(14222838-14222896)
[»] chr1 (4 HSPs)
chr1 (69-168)||(31770870-31770966)
chr1 (70-148)||(7607901-7607977)
chr1 (6-68)||(40981488-40981548)
chr1 (5-68)||(50290550-50290611)
[»] chr3 (7 HSPs)
chr3 (81-168)||(52130959-52131043)
chr3 (94-147)||(53689434-53689487)
chr3 (5-45)||(12812821-12812861)
chr3 (5-68)||(14459162-14459223)
chr3 (5-148)||(52311477-52311609)
chr3 (5-67)||(53689358-53689418)
chr3 (5-65)||(25489595-25489653)
[»] chr2 (1 HSPs)
chr2 (8-68)||(31409598-31409656)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 19962380 - 19962499
Alignment:
Q  202 tggtttcttgaacccttcttcatcttcctttcctcaacttcctcccctaccccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttg 301  Q
    |||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||    
T  19962380 tggtttcttgaacccttcttcatcatcctttcctcaccttcttcccctacccc-cgtatcaccaccatcatccatggcggcaccaactttggtcgttttg 19962478  T
Q  302 tctccgctgcaaccgtctctg 322  Q
    ||||  |||||||||||||||    
T  19962479 tctctactgcaaccgtctctg 19962499  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 1971209 - 1971365
Alignment:
Q  5 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaacaa----tgttactatctcacctctccattaatt---- 96  Q
    |||||||||||||||||||  |||| ||||||||||||||||| ||||  || ||||||| ||||    |||||||||||||||||||||||| ||        
T  1971209 atcagccgttgatcaaatc--actctttgaaaattgatacacgcgcatacagagaaacaacacaactgatgttactatctcacctctccattatttattt 1971306  T
Q  97 --tgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttct 153  Q
      ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  1971307 attgttcaataccaatgcaaactctacagagccccatgcttccctcttcttctccttct 1971365  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 1971415 - 1971487
Alignment:
Q  250 accccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg 322  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1971415 accctccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg 1971487  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 37362555 - 37362401
Alignment:
Q  5 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaacaatgttactatctcacctctccattaatttgttcaat 104  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||||  |||||||||||||          |||  | ||||||||| ||||||||||    
T  37362555 atcagccgttgatcaaatctcactccttgaaaattgacacacgcgcat--agggaaacaaaacc---------tctt-cttctccatta-tttgttcaat 37362469  T
Q  105 accaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgattaaaca 172  Q
    ||  ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  37362468 actgatgcaaactctacagagccccatgcttccctcttcttctccctctgtcacattttgattaaaca 37362401  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 7841460 - 7841512
Alignment:
Q  94 atttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttct 147  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  7841460 atttgttcaatacca-tgcaaactctacagaaccccatgcttccctcttcttct 7841512  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 7841407 - 7841448
Alignment:
Q  5 atcagccgttgatcaaatctcactcattgaaaattgatacac 46  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  7841407 atcagccgttgatcaaatctcactccttgaaaattgaaacac 7841448  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 1971360 - 1971400
Alignment:
Q  215 ccttcttcatcttcctttcctcaacttcctcccctaccccc 255  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  1971360 ccttcttcatcttcctttcctcaccttcttcccctaccccc 1971400  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 41810349 - 41810445
Alignment:
Q  69 atgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgatta 168  Q
    |||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||    
T  41810349 atgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgatta 41810445  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14209420 - 14209362
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14209420 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14209362  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14210371 - 14210313
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14210371 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14210313  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14211340 - 14211282
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14211340 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14211282  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14212291 - 14212233
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14212291 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14212233  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14214228 - 14214170
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14214228 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14214170  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14215197 - 14215139
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14215197 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14215139  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14216166 - 14216108
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14216166 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14216108  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14217117 - 14217059
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14217117 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14217059  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14218068 - 14218010
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14218068 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14218010  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14220007 - 14219949
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14220007 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14219949  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14220958 - 14220900
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14220958 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14220900  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14221927 - 14221869
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14221927 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14221869  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 14222896 - 14222838
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14222896 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14222838  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 31770966 - 31770870
Alignment:
Q  69 atgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgatta 168  Q
    |||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||    
T  31770966 atgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgatta 31770870  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 7607977 - 7607901
Alignment:
Q  70 tgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctc 148  Q
    ||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  7607977 tgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctc 7607901  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 40981548 - 40981488
Alignment:
Q  6 tcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||||||||||||||| ||||||| || |||||||||||||| |||  ||||||||| |||||    
T  40981548 tcagccgttgatcaaaactcactctttaaaaattgatacacgcgca--tagggaaaccaaaca 40981488  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 50290550 - 50290611
Alignment:
Q  5 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    ||||| ||||||| ||||||||||| ||||||||||||| |||  ||  |||||||||||||||    
T  50290550 atcagtcgttgataaaatctcactccttgaaaattgatagacgctca--tagggaaacaaaaca 50290611  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 52130959 - 52131043
Alignment:
Q  81 cacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgatta 168  Q
    |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||    
T  52130959 cacctctccatta--ttgttcaataccgatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgatta 52131043  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 53689434 - 53689487
Alignment:
Q  94 atttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttct 147  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  53689434 atttgttcaataccgatgcaaactctacagagccccatgcttccctcttcttct 53689487  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 12812861 - 12812821
Alignment:
Q  5 atcagccgttgatcaaatctcactcattgaaaattgataca 45  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12812861 atcagccgttgatcaaatctcactcattgaaaattgataca 12812821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 14459223 - 14459162
Alignment:
Q  5 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  14459223 atcagtcgttgatcaaatctcactccttgaaaattgatacacgagca--tagggaaacaaaaca 14459162  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 52311609 - 52311477
Alignment:
Q  5 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaacaatgttactatctcacctctccattaatttgttcaat 104  Q
    ||||| ||||||||||||||||||| ||||||||||| ||| | |||| | ||||||||||||       || |    | |||||||| |||||||||||    
T  52311609 atcagtcgttgatcaaatctcactccttgaaaattgacacatgcgcatatggggaaacaaaac-------ctct---tcttctccatt-atttgttcaat 52311521  T
Q  105 accaatgcaaactgtacagagccccatgcttccctcttcttctc 148  Q
    ||| ||||||||| |||||||||||||| | |||||||||||||    
T  52311520 accgatgcaaactctacagagccccatgttgccctcttcttctc 52311477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 53689358 - 53689418
Alignment:
Q  5 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaac 67  Q
    ||||||| ||||||||||||||||| ||||||||| | ||||| |||  ||||||||||||||    
T  53689358 atcagccattgatcaaatctcactccttgaaaattaacacacgcgca--tagggaaacaaaac 53689418  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 25489595 - 25489653
Alignment:
Q  5 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaa 65  Q
    |||||||||| |||||||||||||  || |||||||| |||||||||  ||||||||||||    
T  25489595 atcagccgtttatcaaatctcacttcttaaaaattgaaacacgtgca--tagggaaacaaa 25489653  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 31409656 - 31409598
Alignment:
Q  8 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 68  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  31409656 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 31409598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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