View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_low_116 (Length: 329)
Name: NF0856_low_116
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_116 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 29514484 - 29514258
Alignment:
| Q |
30 |
aagccttcttggctgcagccttaaggttctttcgcttcacgcgaccaggaagaccaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29514484 |
aagccttcttggctgcagccttaaggttctttcgcttcacgcgaccgggaagaccaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
29514385 |
T |
|
| Q |
130 |
atcaaccctcaccatgaatgatgggatgttcacaacctgcctcccaaccctgtgaaaccaaaaatgacattatcatccattcccaaacatatttcattat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29514384 |
atcaaccctcaccatgaatgatgggatgttcacaacctgcctcccaaccctgtgaaaccaaaaatgacattatcatccattcccaaacatatttcattat |
29514285 |
T |
|
| Q |
230 |
gaccagttaaataaataaaaaacatta |
256 |
Q |
| |
|
||| || ||||||||||||||| |||| |
|
|
| T |
29514284 |
gactagataaataaataaaaaaaatta |
29514258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 43626194 - 43625995
Alignment:
| Q |
30 |
aagccttcttggctgc-agccttaaggttctttcgcttcacgcgaccaggaagaccaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtg |
128 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43626194 |
aagccttcttggctgccagtcttaaggttctttcgcttcacacgaccaggaagacaaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtg |
43626095 |
T |
|
| Q |
129 |
aatcaaccctca--ccatgaatgatgggatgttcacaacctgcctcccaaccctgtgaaa-ccaaaaatgacattatcatccattcccaaacatatttca |
225 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||||||||||||| |||||| ||||| | ||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
43626094 |
aatcaaccctcaccccatgaaggatgggatgttaacaacctgcctcctaaccctatgaaatcaaaaaatgacattatcatccatccccaaacgtatttca |
43625995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 44924667 - 44924865
Alignment:
| Q |
30 |
aagccttcttggctgcagccttaaggttctttcgcttcacgcgaccaggaagaccaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
129 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
44924667 |
aagccttcttggctgcagcctttaagttctttcacttcacacgaccaggaagaccaccgccgaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
44924766 |
T |
|
| Q |
130 |
atcaaccctcaccatgaatgatgggatgttcacaacctgcctcccaaccctgtgaaaccaaaaatgacattatcatccattcccaaacatatttcatta |
228 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44924767 |
atcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattatcatccattcccaaacatatttcatta |
44924865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 6908694 - 6908884
Alignment:
| Q |
30 |
aagccttcttggctgcagccttaaggttctttcgcttcacgcgaccaggaagaccaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
129 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
6908694 |
aagccttcttggctgcagcctttaagttctttcgtttcacacgaccaggaagaccaccgccgaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
6908793 |
T |
|
| Q |
130 |
atcaaccctcaccatgaatgatgggatgttcacaacctgcctcccaaccctgtgaaaccaaaaatgacattatcatccattcccaaacata |
220 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6908794 |
atcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattatcatccattcccaaacata |
6908884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 44927117 - 44927289
Alignment:
| Q |
30 |
aagccttcttggctgcagccttaaggttctttcgcttcacgcgaccaggaagaccaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
44927117 |
aagccttcttggctgcagccttaaggttctttcacttcacgcgaccaggaagaccaccaccaaagggacttgtgagggaaaagtcaatgtgcttctgtga |
44927216 |
T |
|
| Q |
130 |
atcaaccctcaccatgaatgatgggatgttcacaacctgcctcccaaccctgtgaaaccaaaaatgacattat |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
44927217 |
atcaaccctcaccatgaaggatgggatgttaacaacctgcctcccaaccctgtgaaagcaaaagcgacattat |
44927289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 6901581 - 6901387
Alignment:
| Q |
30 |
aagccttcttggctgcagccttaaggttctttcgcttcacgcgaccaggaagaccaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
6901581 |
aagccttcttggctgcagccttaaggttcttacgcttcacacgaccaggaagaccaccaccgaatggacttgtgagtgaaaagtcaatgtgcttctgtga |
6901482 |
T |
|
| Q |
130 |
atcaaccctcaccatgaatgatgggatgttcacaacctgcctcccaaccctgtgaaacca-aaaatgacattatcatccattcccaaacatattt |
223 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||||| |||| |||||||| |
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|
| T |
6901481 |
atcaacccttaccatgaaggatgggatgttaacaacctgcctcccaactctatgaaaccaaaaaataacattatcatccatgcccagacatattt |
6901387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 44927012 - 44927053
Alignment:
| Q |
44 |
gcagccttaaggttctttcgcttcacgcgaccaggaagacca |
85 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
44927012 |
gcagccttaaggttctttaacttcacgcgaccaggatgacca |
44927053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 202291 - 202101
Alignment:
| Q |
30 |
aagccttcttggctgcagccttaaggttctttcgcttcacgcgaccaggaagaccaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
129 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
202291 |
aagccttcttggctgcagcctttaagttctttcgcttcacacgaccaggaagaccaccgccgaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
202192 |
T |
|
| Q |
130 |
atcaaccctcaccatgaatgatgggatgttcacaacctgcctcccaaccctgtgaaaccaaaaatgacattatcatccattcccaaacata |
220 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
202191 |
atcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattatcatccattcccaaacata |
202101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 206808 - 207002
Alignment:
| Q |
30 |
aagccttcttggctgcagccttaaggttctttcgcttcacgcgaccaggaagaccaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
206808 |
aagccttcttggctgcagccttaaggttcttacgcttcacacgaccaggaagaccaccaccgaatggacttgtgagtgaaaagtcaatgtgcttctgtga |
206907 |
T |
|
| Q |
130 |
atcaaccctcaccatgaatgatgggatgttcacaacctgcctcccaaccctgtgaaacc-aaaaatgacattatcatccattcccaaacatattt |
223 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||| |||||||| |
|
|
| T |
206908 |
atcaacccttaccatgaaggatgggatgttcacaacctgcctcccaaccctatgaaaccaaaaaataacattatcatccatgcccagacatattt |
207002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 24652808 - 24652657
Alignment:
| Q |
30 |
aagccttcttggctgcagccttaaggttctttcgcttcacgcgaccaggaagaccaccaccaaaaggacttgtgagtgaaaagtcaatgtgcttctgtga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24652808 |
aagccttcttggctgcagccttaaggttcttacgcttcacacgaccaggaagaccaccaccgaatggacttgtgagtgaaaagtcaatgtgcttctgtga |
24652709 |
T |
|
| Q |
130 |
atcaaccctcaccatgaatgatgggatgttcacaacctgcctcccaaccctg |
181 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24652708 |
atcaacccttaccatgaaggatgggatgttcacaacctgcctcccaaccctg |
24652657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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