View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_119 (Length: 320)

Name: NF0856_low_119
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_119
NF0856_low_119
[»] chr4 (6 HSPs)
chr4 (26-313)||(8122919-8123206)
chr4 (26-303)||(19804060-19804337)
chr4 (26-309)||(17129847-17130130)
chr4 (26-186)||(14037140-14037300)
chr4 (77-303)||(5119454-5119679)
chr4 (190-267)||(22643797-22643874)
[»] chr5 (4 HSPs)
chr5 (25-303)||(16990577-16990855)
chr5 (33-240)||(26472200-26472407)
chr5 (255-303)||(42139980-42140028)
chr5 (254-300)||(23903108-23903154)
[»] chr2 (3 HSPs)
chr2 (25-303)||(20483412-20483690)
chr2 (25-303)||(28017494-28017772)
chr2 (33-180)||(13130867-13131014)
[»] scaffold1416 (1 HSPs)
scaffold1416 (25-303)||(988-1266)
[»] chr6 (4 HSPs)
chr6 (25-303)||(6342465-6342743)
chr6 (173-305)||(28300229-28300361)
chr6 (173-305)||(28511712-28511844)
chr6 (255-303)||(28519428-28519476)
[»] chr3 (5 HSPs)
chr3 (33-240)||(55310232-55310439)
chr3 (33-294)||(8836297-8836558)
chr3 (197-261)||(12285751-12285815)
chr3 (47-87)||(13890070-13890110)
chr3 (191-243)||(19586494-19586546)
[»] chr8 (4 HSPs)
chr8 (58-303)||(15757503-15757748)
chr8 (33-240)||(19991335-19991542)
chr8 (255-303)||(21029347-21029395)
chr8 (33-97)||(15193208-15193272)
[»] chr7 (2 HSPs)
chr7 (255-309)||(38847025-38847079)
chr7 (255-303)||(18481374-18481422)
[»] chr1 (3 HSPs)
chr1 (255-303)||(6531180-6531228)
chr1 (191-261)||(52778125-52778195)
chr1 (254-314)||(9796843-9796903)
[»] scaffold0669 (1 HSPs)
scaffold0669 (191-296)||(358-463)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 26 - 313
Target Start/End: Complemental strand, 8123206 - 8122919
Alignment:
Q  26 ctcaattttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctcta 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8123206 ctcaattttgctagggctttacttttccaatctaaacttcctaatattttctggtcctatgccgttttgcattcagtttttctcatcaatagagtctcta 8123107  T
Q  126 ctccccttcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8123106 ctccccttcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccac 8123007  T
Q  226 acttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaaggatctgtgctc 313  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8123006 acttcaagctcatagaaccaagttacaacctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaaggatctgtgctc 8122919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 26 - 303
Target Start/End: Complemental strand, 19804337 - 19804060
Alignment:
Q  26 ctcaattttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctcta 125  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||    
T  19804337 ctcaatgttgttagggctttacttttccaatctaaactccctaatattttctggtcatatacagttttgcattcagtttttctcatcaatagagtatcta 19804238  T
Q  126 ctccccttcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccac 225  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||| |||| |||||  |||| |||||||| |||||||||||||||||    
T  19804237 ctccccttcttaaacacaaatatccatatcaggttctctataactctttacctgatattcaatctttccaggtctttggttgcttgtgttatgcttccac 19804138  T
Q  226 acttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    ||||||||||||||||||||| | |||  |||| |  ||||||||| ||||||| | ||| ||||||||||| |||||    
T  19804137 acttcaagctcatagaaccaaattacagtctagggatagaaagtgtattttcttggaatacaagtcaggttttaaagg 19804060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 309
Target Start/End: Original strand, 17129847 - 17130130
Alignment:
Q  26 ctcaattttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctcta 125  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||  ||||||||||| ||||  |||||||||||||||||  ||||||||||||| || |    
T  17129847 ctcaatgttgctagagctttacttttccaatctaaactccctagcattttctggtcttatgtagttttgcattcagttttcatcatcaatagagtttcca 17129946  T
Q  126 ctccccttcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccac 225  Q
    |||| ||||||||| |||||||||||||||| || || ||| |||||||||||||  |||| || || |  || |||||||| ||||||||||| || ||    
T  17129947 ctcctcttcttaaatacaaatctccatatcaggtactttatgattctttacctgacattcagtccttcagagtttttggttgcttgtgttatgcatctac 17130046  T
Q  226 acttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaaggatctgt 309  Q
     || |||||||||||||| || |  ||  |||||| ||||||||| |||||||| || || ||||||||||| |||||||||||    
T  17130047 tctacaagctcatagaacaaaattgcagtctagagtcagaaagtgggttttcttgggttacaagtcaggttttaaaggatctgt 17130130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 14037140 - 14037300
Alignment:
Q  26 ctcaattttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctcta 125  Q
    |||||| ||||||| ||||||| ||| ||||  ||||||||||| ||||||||||| ||||| |||||  | |||||||| ||||| ||||||||| |||    
T  14037140 ctcaatgttgctagagctttaccttttcaattcaaacttcctaacattttctggtcttatgctgttttatactcagttttcctcataaatagagtcccta 14037239  T
Q  126 ctccccttcttaaacacaaatctccatatcaagttctatataattctttacctgatgttca 186  Q
    ||||  ||||| | ||||||||||| ||| | ||| ||||| ||||  |||||||| ||||    
T  14037240 ctccttttcttcaccacaaatctccttattaggttttatatgattcactacctgatattca 14037300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 303
Target Start/End: Original strand, 5119454 - 5119679
Alignment:
Q  77 tggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattctttac 176  Q
    ||||||||||| ||||| ||| |||||||||| |||||||||||| |||||||  | |||    |||||||||| ||||  ||| | ||| |||| ||||    
T  5119454 tggtcatatgcagttttacatgcagtttttcttatcaatagagtccctactcctatccttcgcaacaaatctccttatcgtgttttgtatgattcattac 5119553  T
Q  177 ctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgtttt 276  Q
     ||||||  |||||||||| || ||||| || |||| ||||||||| || ||||| ||||||| |||  | |  ||| ||||||| ||||| | ||||||    
T  5119554 ttgatgtcaattcttttaaagtttttggatgtttgtcttatgcttctactcttcaggctcata-aacataattgcaatctagagctagaaaatctgtttt 5119652  T
Q  277 cttaggatataagtcaggtttcaaagg 303  Q
    |||||| || |||||||| | ||||||    
T  5119653 cttagggtacaagtcaggatacaaagg 5119679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 22643797 - 22643874
Alignment:
Q  190 ttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaa 267  Q
    ||||||||| |||||||| || |||||||||||||| ||||||  ||| |||||||| | |||| ||||||| |||||    
T  22643797 ttttaaggtttttggttgcttatgttatgcttccactcttcaaaatcacagaaccaaattacaatctagagctagaaa 22643874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 25 - 303
Target Start/End: Complemental strand, 16990855 - 16990577
Alignment:
Q  25 tctcaattttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctct 124  Q
    ||||||| ||||||| |||||  | || ||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||     
T  16990855 tctcaatgttgctagagctttgttgtttcaatccaaacttcccaatgttttctggtcatatgctgttttgcattcagtttttctcataaatagagtttca 16990756  T
Q  125 actccccttcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttcca 224  Q
    ||||| ||||| ||||| |||||||| ||||| ||| ||||| |||| || |||||| |||||||||| || || ||||||||  | ||||||||||| |    
T  16990755 actcctcttctcaaacataaatctccttatcatgttttatatgattcattgcctgatattcattctttcaaagtttttggttgcctttgttatgcttcta 16990656  T
Q  225 cacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    ||||||||||||||||||| || | |||| ||||||||||||||||| |||||||||| || ||||| || ||||||||    
T  16990655 cacttcaagctcatagaacaaaattacaatctagagccagaaagtgtattttcttaggttacaagtctggattcaaagg 16990577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 26472200 - 26472407
Alignment:
Q  33 ttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactcccct 132  Q
    ||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||| | ||| | |||||  | || ||||||||  |||| || ||    
T  26472200 ttgctagagctttacttttccaatctaaacttcccaaaattttttggtcatatgctgttattcatgctgttttcttaataaatagagtgcctacccctct 26472299  T
Q  133 tcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaa 232  Q
    ||||||||| |||||||| |||||| |||| ||| |||| ||||||||  | ||||| || || || ||||||||  |||||| |||||| || ||||      
T  26472300 tcttaaacaaaaatctccttatcaacttctttatgattccttacctgacatacattccttcaaagtttttggttgtctgtgttttgcttctactcttctt 26472399  T
Q  233 gctcatag 240  Q
    ||||||||    
T  26472400 gctcatag 26472407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 42139980 - 42140028
Alignment:
Q  255 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    |||||||||||||||  |||||||||||||| |||| ||||||||||||    
T  42139980 ctagagccagaaagtcagttttcttaggatacaagttaggtttcaaagg 42140028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 23903154 - 23903108
Alignment:
Q  254 cctagagccagaaagtgtgttttcttaggatataagtcaggtttcaa 300  Q
    ||||||||||||||||||  ||||||||| || ||||||||||||||    
T  23903154 cctagagccagaaagtgttgtttcttaggctacaagtcaggtttcaa 23903108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 25 - 303
Target Start/End: Complemental strand, 20483690 - 20483412
Alignment:
Q  25 tctcaattttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctct 124  Q
    ||||||| ||||||| |||||  | || ||||| |||||||| ||| |||||||||||||||| |||||||||| |||||||||||| |||||||| ||     
T  20483690 tctcaatgttgctagagctttgttgtttcaatccaaacttcccaatgttttctggtcatatgctgttttgcatttagtttttctcataaatagagtttca 20483591  T
Q  125 actccccttcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttcca 224  Q
    ||||| ||||| ||||| |||||||| ||||| ||| ||||| |||| || |||||| ||||||||||||| || ||||||||  | ||||||||||| |    
T  20483590 actcctcttctcaaacataaatctccttatcatgttttatatgattcattgcctgatattcattcttttaaagtttttggttgcctttgttatgcttcta 20483491  T
Q  225 cacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    ||||||||||||||||||| || | |||| ||||||||||||||||| |||||||||| || ||||| || ||||||||    
T  20483490 cacttcaagctcatagaacaaaattacaatctagagccagaaagtgtattttcttaggttacaagtctggattcaaagg 20483412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 25 - 303
Target Start/End: Original strand, 28017494 - 28017772
Alignment:
Q  25 tctcaattttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctct 124  Q
    ||||||| ||||||| |||||  | || ||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||     
T  28017494 tctcaatgttgctagagctttgttgtttcaatccaaacttcccaatgttttctggtcatatgctgttttgcattcagtttttctcataaatagagtttca 28017593  T
Q  125 actccccttcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttcca 224  Q
    ||||| ||||| ||||| |||||||| ||||| ||| ||||| |||| || | |||| ||||||||||||| || ||||||||  | ||||||||||| |    
T  28017594 actcctcttctcaaacataaatctccctatcatgttttatatgattcattgcttgatattcattcttttaaagtttttggttgcctttgttatgcttcta 28017693  T
Q  225 cacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    ||||||||||||||| ||| || | |||| ||||||||||||||||| |||||||||| || ||||| || ||||||||    
T  28017694 cacttcaagctcatataacaaaattacaatctagagccagaaagtgtattttcttaggttacaagtctggattcaaagg 28017772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 13130867 - 13131014
Alignment:
Q  33 ttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactcccct 132  Q
    ||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||| ||| | ||| | |||||  | || |||| |||  |||| || ||    
T  13130867 ttgctagagctttacttttccaatctaaacttccaaattttttttggtcatatgctgttattcatgctgttttcttaataaataaagtgcctacccctct 13130966  T
Q  133 tcttaaacacaaatctccatatcaagttctatataattctttacctga 180  Q
    | ||||||| |||||||| |||||| |||| ||| |||||||||||||    
T  13130967 ttttaaacaaaaatctccttatcaacttctttatgattctttacctga 13131014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1416 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 25 - 303
Target Start/End: Complemental strand, 1266 - 988
Alignment:
Q  25 tctcaattttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctct 124  Q
    ||||||| ||||||| |||||  | || ||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||     
T  1266 tctcaatgttgctagagctttgttgtttcaatccaaacttcccaatgttttctggtcatatgctgttttgcattcagtttttctcataaatagagtttca 1167  T
Q  125 actccccttcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttcca 224  Q
    ||||| ||||| ||||| |||||||| ||||| ||| ||||| |||| || | |||| ||||||||||||| || ||||||||  | ||||||||||| |    
T  1166 actcctcttctcaaacataaatctccctatcatgttttatatgattcattgcttgatattcattcttttaaagtttttggttgcctttgttatgcttcta 1067  T
Q  225 cacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    ||||||||||||||| ||| || | |||| ||||||||||||||||| |||||||||| || ||||| || ||||||||    
T  1066 cacttcaagctcatataacaaaattacaatctagagccagaaagtgtattttcttaggttacaagtctggattcaaagg 988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 25 - 303
Target Start/End: Original strand, 6342465 - 6342743
Alignment:
Q  25 tctcaattttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctct 124  Q
    ||||||| ||||||| |||||  | || ||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||     
T  6342465 tctcaatgttgctagagctttgttgtttcaatccaaacttcccaatgttttctggtcatatgctgttttgcattcagtttttctcataaatagagtttca 6342564  T
Q  125 actccccttcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttcca 224  Q
    ||||| ||||| ||||| |||||||| ||||| ||| ||||| |||| || | |||| ||||||||||||| || ||||||||  | ||||||||||| |    
T  6342565 actcctcttctcaaacataaatctccctatcatgttttatatgattcattgcttgatattcattcttttaaagtttttggttgcctttgttatgcttcta 6342664  T
Q  225 cacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    ||||||||||||||| ||| || | |||| ||||||||||||||||| |||||||||| || ||||| || ||||||||    
T  6342665 cacttcaagctcatataacaaaattacaatctagagccagaaagtgtattttcttaggttacaagtctggattcaaagg 6342743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 28300361 - 28300229
Alignment:
Q  173 ttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtg 272  Q
    ||||||||  |||| ||||| || || |||||||| || ||||||  ||| || |||||||||||| |||| || | ||| | |||||| | ||||| ||    
T  28300361 ttacctgaccttcaatctttcaaagtttttggttgtttatgttattattcaactcttcaagctcatggaactaaattacagcatagagctataaagtatg 28300262  T
Q  273 ttttcttaggatataagtcaggtttcaaaggat 305  Q
    ||||||||||||| |||| ||||||||||||||    
T  28300261 ttttcttaggatacaagttaggtttcaaaggat 28300229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 305
Target Start/End: Original strand, 28511712 - 28511844
Alignment:
Q  173 ttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtg 272  Q
    ||||||||  |||| ||||| || || |||||||| || ||||||  ||| || |||||||||||| |||| || | ||| | |||||| | ||||| ||    
T  28511712 ttacctgaccttcaatctttcaaagtttttggttgtttatgttattattcaactcttcaagctcatggaactaaattacagcatagagctataaagtatg 28511811  T
Q  273 ttttcttaggatataagtcaggtttcaaaggat 305  Q
    ||||||||||||| |||| ||||||||||||||    
T  28511812 ttttcttaggatacaagttaggtttcaaaggat 28511844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 28519476 - 28519428
Alignment:
Q  255 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    ||||||||| |||||  |||||||||||||| |||| ||||||||||||    
T  28519476 ctagagccacaaagtcagttttcttaggatacaagttaggtttcaaagg 28519428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 55310232 - 55310439
Alignment:
Q  33 ttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactcccct 132  Q
    ||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||| | ||| | |||||  | || ||||||||  |||| || ||    
T  55310232 ttgctagagctttacttttccaatctaaacttcccaaaattttttggtcatatgctgttattcatgctgttttcttaataaatagagtgcctacccctct 55310331  T
Q  133 tcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaa 232  Q
    ||||||||| |||||||| |||||| |||| ||| |||| ||||||||  | ||||| || || || ||||||||  |||||| |||||| || ||||      
T  55310332 tcttaaacaaaaatctccttatcaacttctttatgattccttacctgacatacattccttcaaagtttttggttgtctgtgttttgcttctactcttctt 55310431  T
Q  233 gctcatag 240  Q
    ||||||||    
T  55310432 gctcatag 55310439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 294
Target Start/End: Original strand, 8836297 - 8836558
Alignment:
Q  33 ttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactcccct 132  Q
    ||||||| |||||||||||||||||||||||||| ||  |||| |||||||||||  || | ||| | |||||| | || ||||||||  |||| || ||    
T  8836297 ttgctagagctttacttttccaatctaaacttcccaaatttttttggtcatatgctattattcatgctgtttttttaataaatagagtgcctacccctct 8836396  T
Q  133 tcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaa 232  Q
    |||| |||| |||||||| || ||| |||| ||| |||| ||||||||  | ||||| || || || ||||||||  |||||| |||||| || ||||      
T  8836397 tcttcaacaaaaatctccttaccaacttctttatgattccttacctgacatacattccttcaaagtttttggttgtctgtgttttgcttctactcttctt 8836496  T
Q  233 gctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagtcagg 294  Q
    ||||||||  | || |  ||| ||||||| ||||| | ||||||||| || || ||||||||    
T  8836497 gctcataggtcaaaatttcaatctagagcaagaaaatctgttttcttgggttacaagtcagg 8836558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 12285751 - 12285815
Alignment:
Q  197 gtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagc 261  Q
    ||||||||||| |||||||||||||| || |||||| |||| ||||| || |  |||||||||||    
T  12285751 gtgtttggttgtttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagc 12285815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 13890070 - 13890110
Alignment:
Q  47 cttttccaatctaaacttcctaatattttctggtcatatgc 87  Q
    ||||| |||||||||||||||||| |||| |||||||||||    
T  13890070 ctttttcaatctaaacttcctaattttttttggtcatatgc 13890110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 19586546 - 19586494
Alignment:
Q  191 tttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaac 243  Q
    ||||| ||||||||||| |||||||||||||| || |||||| |||| |||||    
T  19586546 tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaac 19586494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 303
Target Start/End: Original strand, 15757503 - 15757748
Alignment:
Q  58 taaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaa 157  Q
    ||||||||||||| |||| ||||| ||||  ||||| ||| |||| |||||||||||||||||  ||||||   ||||  || |||| || || ||||||    
T  15757503 taaacttcctaattttttttggtcctatgttgttttacatgcagtctttctcatcaatagagttcctactcttgttctcgaaaacaagtcaccttatcaa 15757602  T
Q  158 gttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaaccta 257  Q
    ||||| |||||  || |||||||  || | || || || || ||||| ||  | |||||||| ||||| ||||||  ||||||||| || | |||  | |    
T  15757603 gttctttataaaactctacctgacattaactcattcaaagtctttggctgtctttgttatgcatccacccttcaaagtcatagaacaaaattacagtcca 15757702  T
Q  258 gagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    |||| ||||| |  |||||||||||||| |||||||||| ||||||    
T  15757703 gagctagaaaatcagttttcttaggatacaagtcaggttacaaagg 15757748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 19991335 - 19991542
Alignment:
Q  33 ttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactcccct 132  Q
    ||||||||||| | ||||| ||||||||||||||| || | || ||||| ||||  ||||| |||   ||||| ||||| ||||||||| |||||||  |    
T  19991335 ttgctagggctctcctttttcaatctaaacttcctcatttcttttggtcctatgttgtttttcatgttgttttcctcattaatagagtccctactcctat 19991434  T
Q  133 tcttaaacacaaatctccatatcaagttctatataattctttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaa 232  Q
    |||| || || ||||||| ||||| ||  | || |||  |||| ||||| |  |||| || || || |||||||| || ||||||||||| || ||||||    
T  19991435 tcttcaaaaccaatctccttatcatgtcttgtacaatattttatctgatataaattcattcaaagtttttggttgtttatgttatgcttctactcttcaa 19991534  T
Q  233 gctcatag 240  Q
    ||||||||    
T  19991535 gctcatag 19991542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 21029395 - 21029347
Alignment:
Q  255 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    |||||||||||||||  |||||||||||||| |||| ||||||||||||    
T  21029395 ctagagccagaaagtcagttttcttaggatacaagttaggtttcaaagg 21029347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 15193208 - 15193272
Alignment:
Q  33 ttgctagggctttacttttccaatctaaacttcctaatattttctggtcatatgccgttttgcat 97  Q
    ||||||| ||| | ||||||||||| |||||||| || ||||||||||| ||| | |||||||||    
T  15193208 ttgctagagctctccttttccaatcaaaacttccaaaaattttctggtcttattctgttttgcat 15193272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 38847079 - 38847025
Alignment:
Q  255 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaaggatctgt 309  Q
    ||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||    
T  38847079 ctagagccagaaagtctgttttcttgggatacaagtcaggtttcaaaggctctgt 38847025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 18481422 - 18481374
Alignment:
Q  255 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    |||||||||||||||  |||||||||||||| |||| ||||||||||||    
T  18481422 ctagagccagaaagtcagttttcttaggatacaagttaggtttcaaagg 18481374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 6531180 - 6531228
Alignment:
Q  255 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 303  Q
    ||||||||||||| | ||||||||| ||||| |||||||||||||||||    
T  6531180 ctagagccagaaaatttgttttcttgggatacaagtcaggtttcaaagg 6531228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 52778125 - 52778195
Alignment:
Q  191 tttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagc 261  Q
    ||||| ||||||||||| |||||||||||||| || |||||| |||| ||||| || |  |||||||||||    
T  52778125 tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagc 52778195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 9796903 - 9796843
Alignment:
Q  254 cctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaaggatctgtgctcc 314  Q
    |||||||| |||||| || ||||||||||||| |||  |||| ||||||| ||||||||||    
T  9796903 cctagagctagaaagagtattttcttaggatacaagcaaggtgtcaaaggttctgtgctcc 9796843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 358 - 463
Alignment:
Q  191 tttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagt 290  Q
    ||||| |||||||||||  | ||||| | ||| |||||| || ||||||||||||| | |||||||||||  | ||| | | |||| |||||||| ||||    
T  358 tttaaagtgtttggttgtgtatgttagggttcaacacttaaatctcatagaaccaaattacaacctagagatataaaatctatttttttaggatacaagt 457  T
Q  291 caggtt 296  Q
    ||||||    
T  458 caggtt 463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2877 times since January 2019
Visitors: 6167