View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_120 (Length: 319)

Name: NF0856_low_120
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_120
NF0856_low_120
[»] chr4 (1 HSPs)
chr4 (21-307)||(1959783-1960074)
[»] chr2 (8 HSPs)
chr2 (69-302)||(39748761-39748999)
chr2 (69-280)||(26978507-26978722)
chr2 (69-280)||(27020200-27020415)
chr2 (82-280)||(27087975-27088176)
chr2 (21-70)||(39748684-39748733)
chr2 (31-70)||(26978750-26978789)
chr2 (31-70)||(27020443-27020482)
chr2 (35-70)||(27087898-27087933)
[»] chr8 (2 HSPs)
chr8 (83-264)||(11632071-11632255)
chr8 (35-70)||(11632298-11632333)
[»] chr6 (2 HSPs)
chr6 (69-280)||(34680904-34681117)
chr6 (31-70)||(34681145-34681184)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 307
Target Start/End: Original strand, 1959783 - 1960074
Alignment:
Q  21 tgattaccttattctcaatctcaatggcttcatctcttaacttttctattgagcaatactacccatcctctaaattcctcttcatgtcctcttggccttc 120  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1959783 tgattaccttattctcaatttcaatggcttcatctcttaacttttctattgagcaatgctacccatcctctaaattcctcttcatgtcctcttggccttc 1959882  T
Q  121 ttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaacactcagaatgccttgatactacatcaatatgaccttccacattcttaacag- 219  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||     
T  1959883 ttttagttgtgattgtgatgttgcaatttgtgtagtttgctcataaacactcagaatgccttgatactacgtcagtatgaccttccgcattcttaacagt 1959982  T
Q  220 ttaagctactagttgggta----tgactattaacatattcatgagaatccaaaatttgttttgagtttttaatagatgttttgatttatctg 307  Q
    ||||||||||||||| |||    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  1959983 ttaagctactagttgtgtatgactgactattaacatattcatgagaattcaaaatttattttgagtttttaatagatgttttgatttatctg 1960074  T

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Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 69 - 302
Target Start/End: Original strand, 39748761 - 39748999
Alignment:
Q  69 ttgagcaatactaccc-atcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 167  Q
    ||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  39748761 ttgagcaatgctaccccatcctctaaattccttttcatgttctcttggccttcttgcagttgtgattgcgatgttgcaatttttgtagtttgctcataaa 39748860  T
Q  168 ca--ctcagaatgccttgatactacatcaatatgaccttccacattcttaacag-ttaagctactagttgggtatgactattaacatattcatgagaatc 264  Q
    ||  ||| |||||| || |||| || ||||||||||  ||||||||||| |||| || |||||||||||| || |||||||||||| ||||| |||||||    
T  39748861 cactctcggaatgctttaataccacgtcaatatgactgtccacattctttacagtttgagctactagttgtgtgtgactattaacagattcaagagaatc 39748960  T
Q  265 caaaatttgttttgagt-ttttaatagatgttttgattt 302  Q
    | ||||||||||||||| |||||||||||||| ||||||    
T  39748961 cgaaatttgttttgagtcttttaatagatgttctgattt 39748999  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 69 - 280
Target Start/End: Complemental strand, 26978722 - 26978507
Alignment:
Q  69 ttgagcaatactac-ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 167  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||| || ||| |||||||||| |||||||||||||||||| || ||||    
T  26978722 ttgagcaatgctacaccatcctctaacttcctcttcatgtcctcttgaccttcttctaattgcgattgtgatgctgcaatttttgtagtttgttcgtaaa 26978623  T
Q  168 cac--tcagaatgccttgatactacatcaatatgaccttccacattcttaacag-ttaagctactagttgggtatgactattaacatattcatgagaatc 264  Q
    |||  || ||||||||| |||| ||||||||||||  ||| ||||||||||||| || ||| ||||| |  || |||||| ||||  ||||| |||||||    
T  26978622 cactttcggaatgccttaataccacatcaatatgagtttcaacattcttaacagtttgagcaactagctctgtgtgactactaaccgattcaagagaatc 26978523  T
Q  265 caaaatttgttttgag 280  Q
     ||||| |||||||||    
T  26978522 aaaaatctgttttgag 26978507  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 69 - 280
Target Start/End: Complemental strand, 27020415 - 27020200
Alignment:
Q  69 ttgagcaatactac-ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 167  Q
    ||||||||| |||| ||||||||||| ||| |||||||||| ||||| |||||||  |||||||| || |||| |||||||||||| ||||| || ||||    
T  27020415 ttgagcaatgctacaccatcctctaacttcatcttcatgtcttcttgaccttcttcaagttgtgactgcgatgctgcaatttttgtcgtttgttcgtaaa 27020316  T
Q  168 cac--tcagaatgccttgatactacatcaatatgaccttccacattcttaacag-ttaagctactagttgggtatgactattaacatattcatgagaatc 264  Q
    |||  ||||| |||||| |||| ||||||||||||  ||| ||||||||||||| || ||| |||||||| || |||||||||||  ||||| |||||||    
T  27020315 cactttcagagtgccttaataccacatcaatatgagtttcaacattcttaacagtttgagcaactagttgtgtgtgactattaaccgattcaagagaatc 27020216  T
Q  265 caaaatttgttttgag 280  Q
     ||||| |||||||||    
T  27020215 aaaaatctgttttgag 27020200  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 280
Target Start/End: Original strand, 27087975 - 27088176
Alignment:
Q  82 cccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaacac--tcagaatgc 179  Q
    |||||||||||| || ||||||||||||||||| ||||||| ||||||||| ||||||| || ||||||| | ||||| || |||||||  |  ||||||    
T  27087975 cccatcctctaattttctcttcatgtcctcttgaccttcttctagttgtgactgtgatgctgtaatttttttcgtttgttcgtaaacacttttggaatgc 27088074  T
Q  180 cttgatactacatcaatatgaccttccacattcttaacag-ttaagctactagttgggtatgactattaacatattcatgagaatccaaaatttgttttg 278  Q
    ||| |||| ||||||||||||  ||| ||||||||||||| || ||| ||||| |  || |||||||||||  ||||| ||||||| ||||| | |||||    
T  27088075 cttaataccacatcaatatgagtttcaacattcttaacagtttgagcaactagctctgtgtgactattaaccgattcaagagaatcaaaaatatattttg 27088174  T
Q  279 ag 280  Q
    ||    
T  27088175 ag 27088176  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 39748684 - 39748733
Alignment:
Q  21 tgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39748684 tgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 39748733  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 26978789 - 26978750
Alignment:
Q  31 attctcaatctcaatggcttcatctcttaacttttctatt 70  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26978789 attctcaatctcaatggcttcatctcttaacttttctatt 26978750  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 27020482 - 27020443
Alignment:
Q  31 attctcaatctcaatggcttcatctcttaacttttctatt 70  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  27020482 attctcaatctcaatggcttcctctcttaacttttctatt 27020443  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 27087898 - 27087933
Alignment:
Q  35 tcaatctcaatggcttcatctcttaacttttctatt 70  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27087898 tcaatctcaatggtttcatctcttaacttttctatt 27087933  T

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Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 83 - 264
Target Start/End: Complemental strand, 11632255 - 11632071
Alignment:
Q  83 ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaacac--tcagaatgcc 180  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||| |||||||  |||||||| |    
T  11632255 ccatcctctaatttcctcttcatgtcctcttgaccttcttctagttgtgattgcgatgctgcaatttttgtagtttgctcgtaaacactttcagaatgtc 11632156  T
Q  181 ttgatactacatcaatatgaccttccacattcttaacag-ttaagctactagttgggtatgactattaacatattcatgagaatc 264  Q
    ||  ||| ||||||||||||  ||| |||||||| |||| || |||||||||||| || |||||||||||  ||||| |||||||    
T  11632155 ttagtaccacatcaatatgagtttcaacattcttgacagtttgagctactagttgtgtgtgactattaactgattcaagagaatc 11632071  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 11632333 - 11632298
Alignment:
Q  35 tcaatctcaatggcttcatctcttaacttttctatt 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  11632333 tcaatctcaatggcttcatctcttaacttttctatt 11632298  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 280
Target Start/End: Complemental strand, 34681117 - 34680904
Alignment:
Q  69 ttgagcaatactac-ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 167  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||| || ||| |||||||||| |||||||||||||||||| |||||||    
T  34681117 ttgagcaatgctacaccatcctctaacttcctcttcatgtcctcttgaccttcttctaattgcgattgtgatgctgcaatttttgtagtttgttcataaa 34681018  T
Q  168 cac--tcagaatgccttgatactacatcaatatgaccttccacattcttaacag-ttaagctactagttgggtatgactattaacatattcatgagaatc 264  Q
    |||  |  ||||||||| |||| ||||||||||||  ||| ||||||||||||| || ||| ||||| |  || |||||| ||||  ||||| |||||||    
T  34681017 cacttttggaatgccttaataccacatcaatatgagtttctacattcttaacagtttgagcaactagct--gtgtgactactaaccgattcaagagaatc 34680920  T
Q  265 caaaatttgttttgag 280  Q
     ||||| |||||||||    
T  34680919 aaaaatctgttttgag 34680904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 34681184 - 34681145
Alignment:
Q  31 attctcaatctcaatggcttcatctcttaacttttctatt 70  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34681184 attctcaatctcaatggcttcatctcttaacttttctatt 34681145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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