View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_130 (Length: 304)
Name: NF0856_low_130
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_130 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 34110680 - 34110924
Alignment:
| Q |
1 |
tctggataatgtttgcccaggctcagaatccttagttgaggactttcaggttcaagttccagattgtaaaattttgataacttctagagttgagtttcca |
100 |
Q |
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| T |
34110680 |
tctggataatgtttgcccaggctcagaatccttagttgaggactttcaggttcaagttccagattgtaaaattttgataacttctagagttgagtttcca |
34110779 |
T |
|
| Q |
101 |
cggtttagttcactattcttaaagccgcttagagatgatgacgcagttaccctttttggtagctttgcactaccaaatgatgcaacaagagcaacttatg |
200 |
Q |
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| T |
34110780 |
cggtttagttcactattcttaaagccgctcagagatgatgacgcagttaccctttttggtagctttgcactaccaaatgatgcaacaagagcaacttatg |
34110879 |
T |
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| Q |
201 |
tacctgctgaaaaatatgtaaaacaggtttgttatattcatctca |
245 |
Q |
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| T |
34110880 |
tacctgctgaaaaatatgtaaaacaggtttgttatattcatctca |
34110924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 34122442 - 34122683
Alignment:
| Q |
5 |
gataatgtttgcccaggctcagaatccttagttgaggactttcaggttcaagttccagattgtaaaattttgataacttctagagttgagtttccacggt |
104 |
Q |
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| T |
34122442 |
gataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaattttgataacttctagagttaagtttccacggg |
34122541 |
T |
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| Q |
105 |
tt----agttcactattcttaaagccgcttagagatgatgacgcagttaccctttttggtagctttgcactaccaaatgatgcaacaagagcaacttatg |
200 |
Q |
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| T |
34122542 |
tttcaaacttcattattcttaaagcctcttagcgatgatgatgctgttactgttttccgtcactttgcactaccaaatgatggaaccacaggatcttacg |
34122641 |
T |
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| Q |
201 |
tacctgctgaaaaatatgtaaaacaggtttgttatattcatc |
242 |
Q |
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| T |
34122642 |
ttcctgatgaagatgatgtacaacaggtttgttatattcatc |
34122683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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