View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_132 (Length: 303)

Name: NF0856_low_132
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_132
NF0856_low_132
[»] chr1 (4 HSPs)
chr1 (149-303)||(2660552-2660706)
chr1 (9-72)||(2660410-2660473)
chr1 (161-302)||(46167643-46167782)
chr1 (150-242)||(8133647-8133739)
[»] chr7 (1 HSPs)
chr7 (168-294)||(28006814-28006940)
[»] scaffold0236 (1 HSPs)
scaffold0236 (167-292)||(10134-10257)
[»] chr8 (1 HSPs)
chr8 (171-215)||(16863039-16863083)
[»] chr3 (1 HSPs)
chr3 (167-291)||(24991707-24991830)
[»] chr4 (1 HSPs)
chr4 (150-297)||(26475054-26475200)
[»] chr2 (1 HSPs)
chr2 (150-267)||(8520612-8520728)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 149 - 303
Target Start/End: Original strand, 2660552 - 2660706
Alignment:
Q  149 tcaagctaatcccccacaaaaccaacataaaccaaaagttgcgccaaaatttcacactccattgtgaagggtcacataaacaaaatccaaacactcatca 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2660552 tcaagctaatcccccacaaaaccaacataaaccaaaagttgcgccaaaatttcacactccattgtgaagggccacataaacaaaatccaaacactcatca 2660651  T
Q  249 cctactactcacaccaaagctactccaaaaaaccatcacacccgctaaagccccc 303  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||| |||||    
T  2660652 cctactactcacaccaaagctactccaaaaaaccattacacccactaaaaccccc 2660706  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 2660410 - 2660473
Alignment:
Q  9 agcatagggcatctgatataggcggaacacctaaaaaagaaaatgtccacaccgtacatcttaa 72  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2660410 agcaaagggcatctaatataggcggaacacctaaaaaagaaaatgtctacaccgtacatcttaa 2660473  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 302
Target Start/End: Complemental strand, 46167782 - 46167643
Alignment:
Q  161 cccacaaaaccaacataaaccaaaagttgcgccaaaatttcacactccattgtgaagggtcacataaacaaaatccaaacactcatcacctactactcac 260  Q
    |||||||||||||||||||||||||||||   |||||  | ||||||||| || || |  |||  ||||||||  |||||||  |||  ||||| |||||    
T  46167782 cccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgaccac--aaacaaaaatcaaacacctatcgactacttctcac 46167685  T
Q  261 accaaagctactccaaaaaaccatcacacccgctaaagcccc 302  Q
    ||||| |   ||||||||||||||||| ||| ||||| ||||    
T  46167684 accaaggtcgctccaaaaaaccatcactcccactaaaacccc 46167643  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 8133739 - 8133647
Alignment:
Q  150 caagctaatcccccacaaaaccaacataaaccaaaagttgcgccaaaatttcac-actccattgtgaagggtcacataaacaaaatccaaacac 242  Q
    |||| ||| |||||||||| |||||||||||||||||||| |||||||  |||| ||| |||  |||| || |||| ||||||||| |||||||    
T  8133739 caagttaagcccccacaaa-ccaacataaaccaaaagttgagccaaaacctcacaacttcatcatgaatggccacaaaaacaaaattcaaacac 8133647  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 28006940 - 28006814
Alignment:
Q  168 aaccaacataaaccaaaagttgcgccaaaatttcacactccattgtgaagggtcacataaacaaaatccaaacactcatcacctactactcacaccaaag 267  Q
    ||||||||||||||||||  || |||||||  | ||||||| |  |||| || |||||||||||||| |||||||  ||||||  |||||||||||||||    
T  28006940 aaccaacataaaccaaaatgtgagccaaaaccttacactccctcatgaatggccacataaacaaaattcaaacacctatcacccgctactcacaccaaag 28006841  T
Q  268 ctactccaaaaaaccatcacacccgct 294  Q
    | |||| | |||| |||||||||||||    
T  28006840 ccactcaagaaaatcatcacacccgct 28006814  T

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Target: scaffold0236 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 10134 - 10257
Alignment:
Q  167 aaaccaacataaaccaaaagttgcgccaaaatttcacactccattgtgaagggtcacataaacaaaatccaaacactcatcacctactactcacaccaaa 266  Q
    ||||||||||||| ||||||||| || ||||| |||| |  |   ||||| || |||||||||||||||||||||    || || |||||||||||||||    
T  10134 aaaccaacataaatcaaaagttgagctaaaatctcacccaacc--gtgaatgggcacataaacaaaatccaaacatctgtcgcccactactcacaccaaa 10231  T
Q  267 gctactccaaaaaaccatcacacccg 292  Q
    || ||||||||||| |||||||||||    
T  10232 gccactccaaaaaatcatcacacccg 10257  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 16863083 - 16863039
Alignment:
Q  171 caacataaaccaaaagttgcgccaaaatttcacactccattgtga 215  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||    
T  16863083 caacatacaccaaaagttaagccaaaatttcacactccattgtga 16863039  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 291
Target Start/End: Original strand, 24991707 - 24991830
Alignment:
Q  167 aaaccaacataaaccaaaagttgcgccaaaatttcacactccattgtgaagggtcacataaacaaaatccaaacactcatcacctactactcacaccaaa 266  Q
    ||||||||||||||||||||||  |||||||  |||| |||||  ||||| || |||| |||||||||||||| ||  |||  |  || |||||||||||    
T  24991707 aaaccaacataaaccaaaagtt--gccaaaacatcaccctccaacgtgaatgggcacaaaaacaaaatccaaatacctatcgtccgcttctcacaccaaa 24991804  T
Q  267 gctactcc-aaaaaaccatcacaccc 291  Q
     |  |||| |||||||||||||||||    
T  24991805 tccgctccaaaaaaaccatcacaccc 24991830  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 297
Target Start/End: Complemental strand, 26475200 - 26475054
Alignment:
Q  150 caagctaatcccccacaaaaccaacataaaccaaaagttgcgccaaaatttcacactccattgtgaagggtcacataaacaaaatccaaacactcatcac 249  Q
    |||||||| |||| |||||   |||||||||||||||||| | |||| |  |||||||||| ||||| || || | || ||||||||||||||  ||| |    
T  26475200 caagctaaacccctacaaactaaacataaaccaaaagttgagtcaaact--cacactccatcgtgaatggccatagaatcaaaatccaaacacctatcgc 26475103  T
Q  250 ctactactcacaccaaagctactc-caaaaaaccatcacacccgctaaa 297  Q
    ||  || ||||| |||||| ||||  ||||||||| ||||||| |||||    
T  26475102 ctgatattcacatcaaagccactctaaaaaaaccaacacacccactaaa 26475054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 8520728 - 8520612
Alignment:
Q  150 caagctaatcccccacaaaaccaacataaaccaaaagttgcgccaaaatttcacactccattgtgaagggtcacataaacaaaatccaaacactcatcac 249  Q
    |||||||| ||||| |||| | ||||||||| |||||||| || |||| |   | |||||| ||||| || ||||||||||||||||||||||  ||| |    
T  8520728 caagctaaaccccctcaaatc-aacataaactaaaagttgagcaaaaactcatccctccatcgtgaatggccacataaacaaaatccaaacacctatcgc 8520630  T
Q  250 ctactactcacaccaaag 267  Q
     | ||||| |||||||||    
T  8520629 tttctacttacaccaaag 8520612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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