View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_136 (Length: 295)
Name: NF0856_low_136
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_136 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 119 - 295
Target Start/End: Complemental strand, 28668226 - 28668050
Alignment:
| Q |
119 |
aatcccttcaccttacataaattccttttaccatataatctgtactaaccagcaaacattcccaaaatgaactattcctcagatacacttcaaatcaata |
218 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28668226 |
aatctcttcaccctacataaattccttttaccatataatctgtactaaccagcaaacattcccaaaatgaactattcctcagatacacttcaaatcaata |
28668127 |
T |
|
| Q |
219 |
cccaacttgcaaacatttcaggtcaccaaatcaaaccacttatgcaaaatcaaccacgccaagaaaacatacctcat |
295 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28668126 |
cccaatttgcaaacatttcaggtcaccaaatcaaaccacttatgcaaaatcaaccacgccaagaaaacatacctcat |
28668050 |
T |
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