View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_146 (Length: 291)
Name: NF0856_low_146
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_146 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 34110575 - 34110297
Alignment:
| Q |
17 |
tcgaaataatgtctgcacaatgttcttcaaatttggaatttttgacatagtgaagaacaatatattttccccaaatttacctagtccaaacaaaccaata |
116 |
Q |
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| T |
34110575 |
tcgaaataatgtctgcacaatgttcttcaaatttggaatttttgacacagtgaagaacaatatattttccccaaatttacctagtccaaacaaacaaata |
34110476 |
T |
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| Q |
117 |
agattcttaaatatcatgtttcacgtcatttgcaa-aaaagacttgtcattatgaatgaaagagtaaggtttcaaaaaagtgtacaatatcatagttatc |
215 |
Q |
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| T |
34110475 |
agattcttaaatatcatgtttcacgtcgtttgcaaaaaaagacttgtcattatgaatgaaagagtaaggtttcaaaaaagtgtacaatatcatagttatc |
34110376 |
T |
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| Q |
216 |
gaagtctcc---acaacaacagaagttgcatcaactatattttatcatgattctcaataatatcaaatagcatgatgca |
291 |
Q |
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| T |
34110375 |
gaagtctccacaacaacaacagaagttgcatcaactatattttatcatgattctcaataatatcaaatagcatgatgca |
34110297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 34122323 - 34122236
Alignment:
| Q |
24 |
aatgtctgcacaatgttcttcaaatttggaatttttgacatagtgaagaacaatatattttccccaaatttacctagtccaaacaaac |
111 |
Q |
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||||| ||||||||||||||||||| |||| |||| | || | |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34122323 |
aatgtttgcacaatgttcttcaaatctggatttttcgccacatgaaagaacaatatattttccccaaattttcctagtccaaacaaac |
34122236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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