View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_low_147 (Length: 291)
Name: NF0856_low_147
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_147 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 30 - 276
Target Start/End: Complemental strand, 26017284 - 26017036
Alignment:
| Q |
30 |
ccttgcacatgcatccattttgtaaatcccattaaccataaattcaataagacctttccaaatttgtttaataaatctatatagtatnnnnnnnnnnnnn |
129 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26017284 |
ccttacacatgtatccattttgtaaatcccattaaccataaatttaataagacctttccaaatttgtttaataaatctatatagtataaaaaaaaaaaaa |
26017185 |
T |
|
| Q |
130 |
nn--gatgaacaaatccatgcaacccatgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgctt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26017184 |
aaaagatgaacaaatccatgcaacccatgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgctt |
26017085 |
T |
|
| Q |
228 |
cctctcttacaatacacagaaaacccatctccttctacctcaacaacat |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26017084 |
cctctcttacaatacacagaaaacccatctccttctacctcaacaacat |
26017036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 26002114 - 26001993
Alignment:
| Q |
155 |
tgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaaccca |
254 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| || || | |||| ||||||||||||||||||| ||| |
|
|
| T |
26002114 |
tgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttcttacaatacacagaaaatcca |
26002015 |
T |
|
| Q |
255 |
tctccttctacctcaacaacat |
276 |
Q |
| |
|
||||| || ||||||||||||| |
|
|
| T |
26002014 |
tctccctccacctcaacaacat |
26001993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 30373307 - 30373232
Alignment:
| Q |
201 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacat |
276 |
Q |
| |
|
|||||||| ||||||| || ||| || |||||||||||||| |||||| |||||||||| || |||||||||||| |
|
|
| T |
30373307 |
taacgatcttccatatactccctcctccctctcttacaataaacagaatacccatctccctccgcctcaacaacat |
30373232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2414 times since January 2019
Visitors: 6162