View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_15 (Length: 621)
Name: NF0856_low_15
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 30 - 558
Target Start/End: Complemental strand, 28887937 - 28887409
Alignment:
| Q |
30 |
ccataaccaattcccttatttgctcctgtcacaacagcatacctgaaaacaaatttcataaaactaaaaatcaactatgttgttacaaagtatttgctat |
129 |
Q |
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| T |
28887937 |
ccataaccaattcccttatttgctcctgtcacaacagcatacctgaaaacaaatttcataaaactaaaaatcaactatgttgttacaaagtatttgctat |
28887838 |
T |
|
| Q |
130 |
tttttgtatacaaagaccacctaaacaaaacaaaaagtaccttatggcttctgttcccattacgtaacacttaggaggtgattgatgaatctaaatttgt |
229 |
Q |
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| T |
28887837 |
tttttgtatacaaagaccacctaaacaaaacaaaaagtaccttatggcttctgtccccattatgtaacacttaggaggtgattgatgaatctaaatttgt |
28887738 |
T |
|
| Q |
230 |
tgtattagcacctatttcttacaagcttgttccttatatagtatcatcaaaatgatgaaccttcttttaaaaaataattatgttaagttggttacaatga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28887737 |
tgtattagcacctatttcttacaagcttgttccttatatagtatcatcaaaatgatgaaccttcttttaaaaaataattatgtt-agttggttacaatga |
28887639 |
T |
|
| Q |
330 |
catatgttaatg-ttttttaaaggagtatatatatctggaatcaattgccgtttgcatgaatattggtaacggaaagattgaaatgttataaagaaaata |
428 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28887638 |
catatgttaatgtttttttaaaggagtatatatatctggaatcaattgccgtttgcatgaatattggtaacggaaagattgaaatgttataaagaaaata |
28887539 |
T |
|
| Q |
429 |
acaactaagaatagcttatggaaattagagtaagaaaattaattaactatgattatattactgtcatgtactcattattccaaggtcatatttggcctag |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28887538 |
acaactaagaatagcttatggaaattagagtaagaaaattaattaactatgattatattactgtcatgtactcattattccaaggtcatatttggcctag |
28887439 |
T |
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| Q |
529 |
gtgatcattttccttttggatttggatatt |
558 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28887438 |
gtgatcattttccttttggatttggatatt |
28887409 |
T |
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