View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_158 (Length: 273)
Name: NF0856_low_158
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_158 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 52 - 273
Target Start/End: Complemental strand, 36200067 - 36199846
Alignment:
| Q |
52 |
catgggatttacgaagaattgcggctaggccaagatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatg |
151 |
Q |
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| T |
36200067 |
catgggatttacgaagaattgcggctaggccaagatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatg |
36199968 |
T |
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| Q |
152 |
gataaccggtgggtcatggctatgtagatacaaaagtcctctcaggatctgtatgcaccaatgcttcactgctcttatgttaactctcttgtgcttcagc |
251 |
Q |
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| T |
36199967 |
gataaccggtgggtcatggctatgtagatacaaaagtcctctcaggatctgtatgcaccaatgcttcactgctcttatgttaactctcttgtgcttcagc |
36199868 |
T |
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| Q |
252 |
ctatacctattcgataatcgaa |
273 |
Q |
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| T |
36199867 |
ctatacctattcaacaatcgaa |
36199846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 259
Target Start/End: Original strand, 47005712 - 47005914
Alignment:
| Q |
57 |
gatttacgaagaattgcggctaggccaagatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatggataa |
156 |
Q |
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| T |
47005712 |
gatttgcggagaattgcagcaaggccgagatcgccaattttgacttctccttggttaccattgacgaaaatattatcacacttgagatctctatggatca |
47005811 |
T |
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| Q |
157 |
ccggtgggtcatggctatgtagatacaaaagtcctctcaggatctgtatgcaccaatgcttcactgctcttatgttaactctcttgtgcttcagcctata |
256 |
Q |
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| T |
47005812 |
caggagggtcatggctgtggagatagacaagaccttccaaaatctgcctgcaccaatgcttaactgctctgatgttaactcttttatgtttaagtctata |
47005911 |
T |
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| Q |
257 |
cct |
259 |
Q |
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| T |
47005912 |
cct |
47005914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 52 - 262
Target Start/End: Original strand, 47354317 - 47354527
Alignment:
| Q |
52 |
catgggatttacgaagaattgcggctaggccaagatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatg |
151 |
Q |
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|||| ||||| || |||||||| || | |||||||||||||| || ||||| |||||||||||||| || ||||| ||||||||||| ||||||||||| |
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| T |
47354317 |
catgtgatttccggagaattgctgccaaaccaagatccccaatcttcacttccccttgatttccattaatgaaaatattatcacatttaagatctctatg |
47354416 |
T |
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| Q |
152 |
gataaccggtgggtcatggctatgtagatacaaaagtcctctcaggatctgtatgcaccaatgcttcactgctcttatgttaactctcttgtgcttcagc |
251 |
Q |
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||| || |||||||| |||||||| ||||| ||||||| |||||||||| | |||||||||||||||||||| || ||||| ||||||||||| ||| |
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| T |
47354417 |
gatcacaggtgggtcgtggctatgaagataatgaagtccttgcaggatctgtctacaccaatgcttcactgctctaatattaaccctcttgtgctttagc |
47354516 |
T |
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| Q |
252 |
ctatacctatt |
262 |
Q |
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| T |
47354517 |
ctatacctatt |
47354527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 31952043 - 31952154
Alignment:
| Q |
66 |
agaattgcggctaggccaagatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatggataaccggtgggt |
165 |
Q |
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|||||||| ||||| ||||| || |||||||| |||| ||| ||| ||||||| ||| |||||||||||||| || || |||||||| || ||||| | |
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| T |
31952043 |
agaattgcagctagtccaaggtcaccaattttcacttgtccaagatgaccattgacaaatatgttatcacattttaggtccctatggattacaggtggat |
31952142 |
T |
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| Q |
166 |
catggctatgta |
177 |
Q |
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| T |
31952143 |
catggccatgta |
31952154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 43707427 - 43707355
Alignment:
| Q |
84 |
agatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatggataa |
156 |
Q |
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||||| ||||| || ||||||||||||| ||||| ||||| ||||||||||| |||| ||| ||||| |||| |
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| T |
43707427 |
agatctccaatcttaacttctccttgatgaccatttataaatatgttatcacacttgacatccctatgtataa |
43707355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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