View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_159 (Length: 273)

Name: NF0856_low_159
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_159
NF0856_low_159
[»] chr3 (5 HSPs)
chr3 (1-260)||(33990701-33990960)
chr3 (190-220)||(1116401-1116431)
chr3 (187-224)||(4216083-4216120)
chr3 (189-242)||(35335587-35335640)
chr3 (184-220)||(2452426-2452462)
[»] chr4 (2 HSPs)
chr4 (204-246)||(7367535-7367577)
chr4 (193-241)||(43843634-43843682)
[»] chr5 (2 HSPs)
chr5 (186-222)||(6760514-6760550)
chr5 (207-255)||(9897920-9897968)
[»] chr1 (2 HSPs)
chr1 (186-246)||(3523373-3523433)
chr1 (193-235)||(52156777-52156819)
[»] chr7 (2 HSPs)
chr7 (203-258)||(41775203-41775258)
chr7 (186-224)||(438696-438734)
[»] chr8 (2 HSPs)
chr8 (204-258)||(14227192-14227246)
chr8 (186-246)||(11556961-11557021)
[»] chr6 (4 HSPs)
chr6 (188-221)||(4323114-4323147)
chr6 (194-231)||(32926315-32926352)
chr6 (186-222)||(29236264-29236300)
chr6 (187-223)||(32921007-32921043)
[»] chr2 (1 HSPs)
chr2 (184-220)||(15804118-15804154)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 33990960 - 33990701
Alignment:
Q  1 cttattcagtttaccttttagtccagcaaccttcttggtctcagaaatttcaacgtctttatatagcacagcttttataactgcatttcaataaaacttc 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990960 cttattcaatttaccttttagtccagcaaccttcttggtctcagaaatttctacgtctttatatagcacagcttttataactgcatttcaataaaacttc 33990861  T
Q  101 actgttagagacattaaacttaaaactcaattatcagataacactgaacatatctggattctggtgtatgacactgaccaatggtttacatttaatcact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  33990860 actgttagagacattaaacttaaaactcaattatcagataacactgaacatatctggattctggtgtatgacactgacccatggtttacatttaagcact 33990761  T
Q  201 tcaattttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtctgtgct 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33990760 tcaattttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtatgtgct 33990701  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 220
Target Start/End: Complemental strand, 1116431 - 1116401
Alignment:
Q  190 atttaatcacttcaattttctcaaattatta 220  Q
    |||||||||||||||||||||||||||||||    
T  1116431 atttaatcacttcaattttctcaaattatta 1116401  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 4216083 - 4216120
Alignment:
Q  187 tacatttaatcacttcaattttctcaaattattattgg 224  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  4216083 tacatttaatcacttcaattttctttaattattattgg 4216120  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 35335640 - 35335587
Alignment:
Q  189 catttaatcacttcaattttctcaaattattattggcgtctatgtgttagtgtc 242  Q
    |||||||||||||  ||||||||||||||||| | | |||||||||| ||||||    
T  35335640 catttaatcactttcattttctcaaattattactagtgtctatgtgtcagtgtc 35335587  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 2452462 - 2452426
Alignment:
Q  184 gtttacatttaatcacttcaattttctcaaattatta 220  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  2452462 gtttacattgaatcacttcaattttctgaaattatta 2452426  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 7367577 - 7367535
Alignment:
Q  204 attttctcaaattattattggcgtctatgtgttagtgtcgtgt 246  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7367577 attttctcaaattattattggtgtctatgtgttagtgtcgtgt 7367535  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 43843634 - 43843682
Alignment:
Q  193 taatcacttcaattttctcaaattattattggcgtctatgtgttagtgt 241  Q
    |||||||||  ||||||||||||||||||||| ||||| ||||||||||    
T  43843634 taatcacttttattttctcaaattattattggtgtctacgtgttagtgt 43843682  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 6760514 - 6760550
Alignment:
Q  186 ttacatttaatcacttcaattttctcaaattattatt 222  Q
    |||||||||||||||| ||||||||||||||||||||    
T  6760514 ttacatttaatcacttaaattttctcaaattattatt 6760550  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 9897920 - 9897968
Alignment:
Q  207 ttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtct 255  Q
    |||||||||||||||||| ||| |||||| |||| ||||||| ||||||    
T  9897920 ttctcaaattattattggtgtcgatgtgtgagtgccgtgtccggtgtct 9897968  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 3523433 - 3523373
Alignment:
Q  186 ttacatttaatcacttcaattttctcaaattattattggcgtctatgtgttagtgtcgtgt 246  Q
    ||||||| ||||||||| ||||| |||||||||||| || ||||| |||| ||||||||||    
T  3523433 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 3523373  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 52156777 - 52156819
Alignment:
Q  193 taatcacttcaattttctcaaattattattggcgtctatgtgt 235  Q
    |||||||||| |||||||||| |||||||| ||||||||||||    
T  52156777 taatcacttccattttctcaagttattattagcgtctatgtgt 52156819  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 41775258 - 41775203
Alignment:
Q  203 aattttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtctgtg 258  Q
    ||||||||||||||||||| || | | |||| |||||||||||||| |||||||||    
T  41775258 aattttctcaaattattatcggtggccatgtcttagtgtcgtgtccggtgtctgtg 41775203  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 438696 - 438734
Alignment:
Q  186 ttacatttaatcacttcaattttctcaaattattattgg 224  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  438696 ttacatttaattacttcaattttcttaaattattattgg 438734  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 14227246 - 14227192
Alignment:
Q  204 attttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtctgtg 258  Q
    ||||||||||||||||||||| ||  | |||| |||| |||||||||||||||||    
T  14227246 attttctcaaattattattggtgttgacgtgtcagtgacgtgtccagtgtctgtg 14227192  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 11556961 - 11557021
Alignment:
Q  186 ttacatttaatcacttcaattttctcaaattattattggcgtctatgtgttagtgtcgtgt 246  Q
    ||||||| |||||||| ||||||||||||||||||  || |||||  ||||||||| ||||    
T  11556961 ttacattcaatcacttaaattttctcaaattattacaggtgtctacatgttagtgttgtgt 11557021  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 4323147 - 4323114
Alignment:
Q  188 acatttaatcacttcaattttctcaaattattat 221  Q
    ||||||||||||||||||||||||||||| ||||    
T  4323147 acatttaatcacttcaattttctcaaattgttat 4323114  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 32926315 - 32926352
Alignment:
Q  194 aatcacttcaattttctcaaattattattggcgtctat 231  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  32926315 aatcacttcaattttcttaaattattattggtgtctat 32926352  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 29236300 - 29236264
Alignment:
Q  186 ttacatttaatcacttcaattttctcaaattattatt 222  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  29236300 ttacattcaatcacttctattttctcaaattattatt 29236264  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 32921007 - 32921043
Alignment:
Q  187 tacatttaatcacttcaattttctcaaattattattg 223  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  32921007 tacattaaatcacttcaattttcttaaattattattg 32921043  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 15804118 - 15804154
Alignment:
Q  184 gtttacatttaatcacttcaattttctcaaattatta 220  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  15804118 gtttacattcaatcacttccattttctcaaattatta 15804154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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