View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_163 (Length: 269)
Name: NF0856_low_163
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_163 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 35204173 - 35204413
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggggcatgacagggtttatca |
128 |
Q |
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| T |
35204173 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
35204272 |
T |
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| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattacannnnnnnnnnactctatcttttaacaattatccnnnnnnnnnta |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || |
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| T |
35204273 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattacatttttttttcactctatcttttgacaattatccaaaaaaaaata |
35204372 |
T |
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| Q |
229 |
ttgaaaatgtgggactgtatattaacctagttctatatatt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204373 |
ttgaaaatgtgggactgtatattaacctagttctatatatt |
35204413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 55859453 - 55859306
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggggcatgacagggtttatca |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || ||| |
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| T |
55859453 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccatagtgctagg----tgacaggtttcatc- |
55859359 |
T |
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| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattaca |
184 |
Q |
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| T |
55859358 |
---aacattgatatattttcttggttccaatttcaaatattcatactcctcttaca |
55859306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 3822574 - 3822721
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggggcatgacagggtttatca |
128 |
Q |
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|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||| ||||||| || ||| |
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| T |
3822574 |
aacttatatgctgtcatttagtggcagggaacatattatcatctatattcaattcaggtgcctagaaactatagtgctagg----tgacaggtttcatc- |
3822668 |
T |
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| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattaca |
184 |
Q |
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|||| | |||||||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
3822669 |
---aacattgatatattttcttggttccaatttctaatattcatactcctcttaca |
3822721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 46267428 - 46267348
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctagg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
46267428 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaatgcaggtgcctagaaaccatagtgctagg |
46267348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 46267337 - 46267293
Alignment:
| Q |
140 |
tatattttcttggttccaacttccaatattcatactcctattaca |
184 |
Q |
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| T |
46267337 |
tatattttcttggttccaatttctaatattcatactcctcttaca |
46267293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 29275145 - 29275292
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggggcatgacagggtttatca |
128 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| || |||| |
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| T |
29275145 |
aacttatatgttgtcatttagtggcaaggaacatttcatcatctatattcaattcaggtgactagaaaccatagtgctagg----tgacaggtttcatca |
29275240 |
T |
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| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattaca |
184 |
Q |
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||| | |||| |||| |||||||||| ||| |||||||| |||||| ||||| |
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| T |
29275241 |
acata----gatatttttttttggttccaatttcaaatattcacactcctcttaca |
29275292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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