View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_17 (Length: 607)

Name: NF0856_low_17
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_17
NF0856_low_17
[»] chr7 (5 HSPs)
chr7 (507-596)||(16157174-16157263)
chr7 (507-596)||(21368483-21368572)
chr7 (513-569)||(22707558-22707614)
chr7 (344-435)||(44356652-44356743)
chr7 (474-511)||(21369457-21369494)
[»] scaffold0003 (1 HSPs)
scaffold0003 (507-596)||(289110-289199)
[»] chr4 (3 HSPs)
chr4 (507-596)||(11475790-11475879)
chr4 (474-511)||(34454924-34454961)
chr4 (474-511)||(11474846-11474883)
[»] chr3 (6 HSPs)
chr3 (507-596)||(33757808-33757897)
chr3 (514-596)||(13179725-13179807)
chr3 (514-596)||(13184383-13184465)
chr3 (474-511)||(13180726-13180763)
chr3 (474-511)||(13185260-13185297)
chr3 (474-511)||(33758804-33758841)
[»] chr2 (3 HSPs)
chr2 (507-596)||(21465107-21465196)
chr2 (507-596)||(44794592-44794681)
chr2 (507-596)||(44794894-44794983)
[»] scaffold0359 (1 HSPs)
scaffold0359 (507-596)||(8605-8694)
[»] chr8 (5 HSPs)
chr8 (507-596)||(16417394-16417483)
chr8 (507-596)||(17459695-17459784)
chr8 (507-596)||(18774142-18774231)
chr8 (344-435)||(20135328-20135419)
chr8 (474-511)||(18775140-18775177)
[»] chr6 (4 HSPs)
chr6 (507-596)||(21299234-21299323)
chr6 (507-569)||(9344249-9344310)
chr6 (474-511)||(12638793-12638830)
chr6 (474-511)||(21302617-21302654)
[»] chr5 (2 HSPs)
chr5 (507-596)||(22821135-22821224)
chr5 (474-511)||(22825867-22825904)
[»] chr1 (2 HSPs)
chr1 (507-596)||(37260555-37260644)
chr1 (483-511)||(37259621-37259649)
[»] scaffold0671 (2 HSPs)
scaffold0671 (507-596)||(2272-2361)
scaffold0671 (483-511)||(1227-1255)
[»] scaffold0065 (1 HSPs)
scaffold0065 (507-596)||(33618-33707)
[»] scaffold0002 (1 HSPs)
scaffold0002 (514-596)||(127181-127263)
[»] scaffold0512 (1 HSPs)
scaffold0512 (474-511)||(4-41)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 507 - 596
Target Start/End: Original strand, 16157174 - 16157263
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||    
T  16157174 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcatttctttttggcacaccctttcattaacaatatttttagttcat 16157263  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 21368572 - 21368483
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  21368572 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcat 21368483  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 569
Target Start/End: Complemental strand, 22707614 - 22707558
Alignment:
Q  513 tcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatc 569  Q
    |||||||||| | ||||| |||||||||||||||||||  |||||||||||||||||    
T  22707614 tcaaatcattatcaaaattaatcccaatacataattttcttttccttttggcacatc 22707558  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 435
Target Start/End: Original strand, 44356652 - 44356743
Alignment:
Q  344 atgaataaaccgtccaactcccttcacacacaacctgaaaaacacttcattccaagcatgaacggggactccgtaagctcacaaccaggccc 435  Q
    |||||||||||||||||| |  |||||||||| |||||| ||  | |||||||||||||| | ||| || |||||| ||| |||||| ||||    
T  44356652 atgaataaaccgtccaacacgattcacacacatcctgaagaaatcatcattccaagcatgtatgggaacaccgtaaactcgcaaccaagccc 44356743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 21369494 - 21369457
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||  |||||||||||||||||||||||||||||    
T  21369494 agggcatggttgtccatgacacaagtgcttcaattcaa 21369457  T

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Target: scaffold0003 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 507 - 596
Target Start/End: Original strand, 289110 - 289199
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||    
T  289110 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcat 289199  T

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Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 507 - 596
Target Start/End: Original strand, 11475790 - 11475879
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||    
T  11475790 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcat 11475879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 34454924 - 34454961
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34454924 agggcataattgtccatgacacaagtgcttcaattcaa 34454961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 11474846 - 11474883
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||  |||||||||||||||||||||||||||||    
T  11474846 agggcatggttgtccatgacacaagtgcttcaattcaa 11474883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 33757897 - 33757808
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  33757897 ttcaactcaaaccattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcat 33757808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 514 - 596
Target Start/End: Complemental strand, 13179807 - 13179725
Alignment:
Q  514 caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| ||||||||||||||||||||||||||||    
T  13179807 caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcat 13179725  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 514 - 596
Target Start/End: Complemental strand, 13184465 - 13184383
Alignment:
Q  514 caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| ||||||||||||||||||||||||||||    
T  13184465 caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcat 13184383  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 13180763 - 13180726
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||  |||||||||||||||||||||||||||||    
T  13180763 agggcatggttgtccatgacacaagtgcttcaattcaa 13180726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 13185297 - 13185260
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||  |||||||||||||||||||||||||||||    
T  13185297 agggcatggttgtccatgacacaagtgcttcaattcaa 13185260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 33758841 - 33758804
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||  |||||||||||||||||||||||||||||    
T  33758841 agggcatggttgtccatgacacaagtgcttcaattcaa 33758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 21465196 - 21465107
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||    
T  21465196 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcat 21465107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 44794681 - 44794592
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| ||||||||||||||||||||||||||||    
T  44794681 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcat 44794592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 596
Target Start/End: Original strand, 44794894 - 44794983
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| ||||||||||||||||||||||||||||    
T  44794894 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcat 44794983  T

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Target: scaffold0359 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 8694 - 8605
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| ||||||||||||||||||||||||||||    
T  8694 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcat 8605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 16417483 - 16417394
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||    
T  16417483 ttcaactcaaatcattgtcaaaattaatctcaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcat 16417394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 17459784 - 17459695
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||||| |||||| ||||    
T  17459784 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaataattttagatcat 17459695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 18774231 - 18774142
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| ||||||||||||||||||||||||||||    
T  18774231 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcat 18774142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 435
Target Start/End: Complemental strand, 20135419 - 20135328
Alignment:
Q  344 atgaataaaccgtccaactcccttcacacacaacctgaaaaacacttcattccaagcatgaacggggactccgtaagctcacaaccaggccc 435  Q
    |||||||||||||||||| |  |||||||||| |||||| ||  | |||||||||||||| | ||| || |||||| ||| |||||| ||||    
T  20135419 atgaataaaccgtccaacacgattcacacacatcctgaagaaatcatcattccaagcatgtatgggaacaccgtaaactcgcaaccaagccc 20135328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 18775177 - 18775140
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||  |||||||||||||||||||||||||||||    
T  18775177 agggcatggttgtccatgacacaagtgcttcaattcaa 18775140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 21299323 - 21299234
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| ||||||||||||||||||||||||||||    
T  21299323 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcat 21299234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 569
Target Start/End: Original strand, 9344249 - 9344310
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatc 569  Q
    ||||||||||||||| || ||||| ||||| |||||||||||||  ||| |||||||||||||    
T  9344249 ttcaactcaaatcatcgtcaaaatcaatcctaatacataattttcgttt-cttttggcacatc 9344310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 12638793 - 12638830
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||  |||||||||||||||||||||||||||||    
T  12638793 agggcatggttgtccatgacacaagtgcttcaattcaa 12638830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 21302654 - 21302617
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||  |||||||||||||||||||||||||||||    
T  21302654 agggcatggttgtccatgacacaagtgcttcaattcaa 21302617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 22821224 - 22821135
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||| ||||||  ||||| |||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  22821224 ttcaactcaattcattgccaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcat 22821135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 22825904 - 22825867
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||  |||||||||||||||||||||||||||||    
T  22825904 agggcatggttgtccatgacacaagtgcttcaattcaa 22825867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 596
Target Start/End: Original strand, 37260555 - 37260644
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| ||||||||| ||||||||||||||||||    
T  37260555 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattgacaatatttttagttcat 37260644  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 511
Target Start/End: Original strand, 37259621 - 37259649
Alignment:
Q  483 ttgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||||||||||||||||||||||||    
T  37259621 ttgtccatgacacaagtgcttcaattcaa 37259649  T

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Target: scaffold0671 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 507 - 596
Target Start/End: Original strand, 2272 - 2361
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||  |||| |||||||||| | ||||||||||||||||||||||||||    
T  2272 ttcaactcaaatcattgtcaaaattaatcccaatacatgattttcgtttctttttggcacaccttttcattaacaatatttttagttcat 2361  T

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Target: scaffold0671; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 511
Target Start/End: Original strand, 1227 - 1255
Alignment:
Q  483 ttgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||||||||||||||||||||||||    
T  1227 ttgtccatgacacaagtgcttcaattcaa 1255  T

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Target: scaffold0065 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 507 - 596
Target Start/End: Complemental strand, 33707 - 33618
Alignment:
Q  507 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    |||||||||||||||||| ||||  ||||||||| |||||||||  ||||||||||||||| |||||||||||||||| |||||||||||    
T  33707 ttcaactcaaatcattgtcaaaaataatcccaatgcataattttcgtttccttttggcacaccctttcattaacaataattttagttcat 33618  T

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Target: scaffold0002 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 514 - 596
Target Start/End: Original strand, 127181 - 127263
Alignment:
Q  514 caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcat 596  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| ||||||||||||||||||||||||||||    
T  127181 caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcat 127263  T

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Target: scaffold0512 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 41 - 4
Alignment:
Q  474 agggcataattgtccatgacacaagtgcttcaattcaa 511  Q
    |||||||  |||||||||||||||||||||||||||||    
T  41 agggcatggttgtccatgacacaagtgcttcaattcaa 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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