View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_171 (Length: 268)
Name: NF0856_low_171
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_171 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 18079594 - 18079851
Alignment:
| Q |
14 |
atatgctgaaagacttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtcaaaa |
113 |
Q |
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| T |
18079594 |
atatgctgaaagacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtccaaa |
18079693 |
T |
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| Q |
114 |
tgtctcacttcttgctgtccat---ttcttgcttttttctctatggttttattaatgtgtgttgctttgcccatgcttcatggctccannnnnnnncttc |
210 |
Q |
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| T |
18079694 |
tgtctcacttcttgctgtccatttcttcttgcttttttctctatcgttttattaatgtgtgttgctttgcccatgcttcatggctccattttttttcttc |
18079793 |
T |
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| Q |
211 |
ttatttcttttggattacttacataattgttattctgcttcacactatttctaatgtc |
268 |
Q |
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| T |
18079794 |
ttatttcttttggattacttacataattgttattctgcttcacactatttctaatgtc |
18079851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 51479952 - 51480199
Alignment:
| Q |
14 |
atatgctgaaaga-cttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtcaaa |
112 |
Q |
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| T |
51479952 |
atatggtgaaagaacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggagatagaagcaaagagacaaggtactttttcgtccaa |
51480051 |
T |
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| Q |
113 |
atgtctcacttcttgctgtccat---ttcttgcttttttctctatggttttattaatgtgtgttgctttgcccatgcttcatggctccannnnnnnnctt |
209 |
Q |
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| T |
51480052 |
aagtctcatttcttgctgtccatttcttcttgcttttttctctatccttttattaatgtgtgttgctttgcccatgcttcatggctcc---ttttttctt |
51480148 |
T |
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| Q |
210 |
cttatttcttttggattacttacataattgttattctgcttcacactattt |
260 |
Q |
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| T |
51480149 |
cttctttcttttggattacttacataattgatatcctgcttcacactattt |
51480199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 30207376 - 30207205
Alignment:
| Q |
26 |
acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtcaaaatgtctcacttct |
125 |
Q |
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| T |
30207376 |
acttcttccgtatttaagacaattggatgaagaacaaatggccgagaaggagatagaagcaaagagacaaggta-tttttcctccaagagtctcacttct |
30207278 |
T |
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| Q |
126 |
tgctgtccat---ttcttgcttttttc--tctatggttttattaatgtgtgttgctttgcccatgcttcatgg |
193 |
Q |
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| T |
30207277 |
tgcaattcatttcttcttgcttttttctatctatccttttattaatgcgagttgcgtttctcatgcttcatgg |
30207205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 51496991 - 51497118
Alignment:
| Q |
14 |
atatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtcaaa |
112 |
Q |
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|||||||||||| |||| ||||||||||||| | | ||||||||| ||||||| |||||||| |||| |||||||| |||| ||| ||||| || || |
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| T |
51496991 |
atatgctgaaagtactttttccatatttaagtcgtttggatgaagagcaaatggctgagaaggagatagaagcaaagatacaaggtatattttcctccaa |
51497090 |
T |
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| Q |
113 |
atgtctcacttcttgctgtccatttctt |
140 |
Q |
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| T |
51497091 |
aagtcttacttcttgcaatccatttctt |
51497118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 43160373 - 43160432
Alignment:
| Q |
7 |
tcgaagaatatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatg |
65 |
Q |
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||||||||||| ||||||| |||||||||| |||||||| | | |||||||||||||||| |
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| T |
43160373 |
tcgaagaatattctgaaaggacttcttccacatttaagagggttggatgaagaacaaatg |
43160432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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