View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_low_178 (Length: 263)
Name: NF0856_low_178
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_178 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 5159669 - 5159850
Alignment:
| Q |
30 |
caaacttcaaaatttagagagaaaacttagaactaaaagagataaaattggttatacttttccattaattaattctaatgagacagtacaatgctggtat |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5159669 |
caaacttcaaaatttagagagaaaacttagaactaaaagagataaaattggttatacttttccatta----attctaatgagacagtacaatgctggtat |
5159764 |
T |
|
| Q |
130 |
aagttggtgcatactactaggaaaataacaccaattacataataacacctaactaactaataaattatgtgtgagattctctccac |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
5159765 |
aagttggtgcatactagtaggaaaataactccaattacataataacacctaactaactaataaattatgtctaagattctctccac |
5159850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2330 times since January 2019
Visitors: 6161