View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_18 (Length: 585)
Name: NF0856_low_18
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Complemental strand, 47717496 - 47716962
Alignment:
| Q |
20 |
gttggtattattttactattcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcaaatactaccatcgccatagttgtgccgactgttg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47717496 |
gttggtattattttactattcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcacatactaccatcgccatagttgtgccgactgttg |
47717397 |
T |
|
| Q |
120 |
tggttgttgttgcttccctgctaattttcatttgcatatgcgtaaggaaaaggaaggcaaagataaatctcgaaggtatgtgacctttcctaaatttgtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717396 |
tggttgttgttgcttccctgctaattttcatttgcatatgcgtaaggaaaaggaaggcaaagataaatctcgaaggtatgtgacctttcctaaatttgtt |
47717297 |
T |
|
| Q |
220 |
agactgtctaagtcgtggtatgaatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaa |
319 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717296 |
agactgtctaagtcgtggtatggatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaa |
47717197 |
T |
|
| Q |
320 |
tagagaaaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattag |
419 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717196 |
tagagacaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattag |
47717097 |
T |
|
| Q |
420 |
catatttttctatttttactttactaacatgccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttcta |
519 |
Q |
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| T |
47717096 |
catattttt--------------ctaacatgccttgtacattgtttgaagatatagaag---atgataataatgatattgaaatcgctgagtcattgcta |
47717014 |
T |
|
| Q |
520 |
ttcaacttcgagacattacgagttgctacagggaacttttctgaagctaata |
571 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
47717013 |
ttcaacttcgagacattacgagttgctacaagtaacttttctgaagctaata |
47716962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 571
Target Start/End: Complemental strand, 47745286 - 47744755
Alignment:
| Q |
20 |
gttggtattattttactattcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcaaatactaccatcgccatagttgtgccgactgttg |
119 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |
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| T |
47745286 |
gttggtaatattttactattcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcacatacta---tcgccacagttgtgccgactgttg |
47745190 |
T |
|
| Q |
120 |
tggttgttgttgcttc---cctgctaattttcatttgcatatgcgtaaggaaaaggaaggcaaagataaatctcgaaggtatgtgacctttcctaaattt |
216 |
Q |
| |
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| ||||||| |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| || ||||||| |
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| T |
47745189 |
ttgttgttgctgctgctggcctgctaattttcatttgcatatgcttaaggaaaaggaaggcaaagataaatctccaaggtacgtgactttgtctaaattc |
47745090 |
T |
|
| Q |
217 |
gttagactgtctaagtcgtggtatgaatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattc |
316 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47745089 |
gtta--ctgtctaagtcgtggtatgaatgcaggataattttgacgacataaaatctacttcataataataagttgtgatggttaacaaagttttgcattc |
47744992 |
T |
|
| Q |
317 |
aaatagagaaaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatat |
416 |
Q |
| |
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||| |||||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||| || || |||||||||||||||||||||| |
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| T |
47744991 |
aaaaagagaaaacctagatgcagtaattcaaaaatagacagaaggcaaagaaaaatggaagcc----tttgtacaatgtttgattttaaaaattagatat |
47744896 |
T |
|
| Q |
417 |
tagcatatttttctatttttactttactaacatgccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcattt |
516 |
Q |
| |
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|||||||| ||| ||||||||||||||| ||||||||||| ||| ||||| |||| ||| |||||||||||||| ||| |||||| |
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| T |
47744895 |
tagcatat--------------tttcctaacatgccttgtacaatgtttgaagatataaaagaagatgaaaataatgatattgaaatcactgcgtcattg |
47744810 |
T |
|
| Q |
517 |
ctattcaacttcgagacattacgagttgctacagggaacttttctgaagctaata |
571 |
Q |
| |
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||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| |
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| T |
47744809 |
ctattcaacttcgagacattacgagttgctacaagtaacttttctgaagataata |
47744755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 254 - 571
Target Start/End: Complemental strand, 47712524 - 47712207
Alignment:
| Q |
254 |
ttttgacgacataaaatttacttcata--ataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaag |
351 |
Q |
| |
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|||||| |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||| |
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| T |
47712524 |
ttttgaagacataaaatctacttcatataataataagttgtgatggttaaca---ttttgcattcaaatagagaaaacctagatgcaataattcaaaaat |
47712428 |
T |
|
| Q |
352 |
agacagat-ggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatatttttctatttttactttactaacatg |
450 |
Q |
| |
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||| | | || ||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712427 |
agaaaaaaagggaaagaaaaatggacgccaatagtcataagtttttttattttaaaaattagatattagcatatttttctatttttactttactaacatg |
47712328 |
T |
|
| Q |
451 |
ccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctattcaacttcgagacattacgagttgctacag |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712327 |
ccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctattcaacttcgagacattacgagttgctacag |
47712228 |
T |
|
| Q |
551 |
ggaacttttctgaagctaata |
571 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
47712227 |
ggaacttttctgaagctaata |
47712207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 47759608 - 47759276
Alignment:
| Q |
20 |
gttggtattattttactattcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcaaatactaccatcgccatagttgtgccgactgttg |
119 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47759608 |
gttggtattattttact---cttaa-ctttgaaatgtctcattttgcagaaaaaagcaaatcatcacatactaccatcgccatagttgtgccgactgttg |
47759513 |
T |
|
| Q |
120 |
tggttgttgttgcttccctgctaattttcatttgcatatgcgtaaggaaaaggaaggcaaagataaatctcgaaggtatgtgacctttcctaaatttgtt |
219 |
Q |
| |
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| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |||||| || ||||||| | |
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| T |
47759512 |
ttgttgttgttgccgccctgctaatttttatttgcatatgcttaaggaaaaggaaggcaaggataaatctcgaaggtgtgtgactttgtctaaattcagt |
47759413 |
T |
|
| Q |
220 |
agactgtctaagtcgtggtatgaatgcaggataatt-------ttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgc |
312 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| ||||||| |||||| |||||||||||| |||||||| |||||||||| |||||||| |
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| T |
47759412 |
agactgtctaaatcgtggtatgaactcaggataattttgagttttgacgatttaaaatctacttcataatattaagttgtaatggttaacaaagttttgc |
47759313 |
T |
|
| Q |
313 |
attcaaatagagaaaacctagaagcagtaattccaaaa |
350 |
Q |
| |
|
||||||||| | |||| ||||| | |||||||| |||| |
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| T |
47759312 |
attcaaata-aaaaaaactagatgtagtaattcaaaaa |
47759276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 47712727 - 47712559
Alignment:
| Q |
7 |
tatagacatgtcggttggtattattttactattcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcaaatactaccatcgccatagtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||| |
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| T |
47712727 |
tatagacatgtcggttggtattattttactattcttaatctttgaaatgtctcattttgcagaaaaaagcaaatcatcacatactaccgtcgccatagtt |
47712628 |
T |
|
| Q |
107 |
gtgccgactgttgtggttgttgttgcttccctgctaattttcatttgcatatgcgtaaggaaaaggaaggca |
178 |
Q |
| |
|
||||| |||| | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47712627 |
gtgccaactgct---gttgttgttgctgccctgctaattttcatttgcatatgcttaaggaaaaggaaggca |
47712559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 421 - 571
Target Start/End: Complemental strand, 47759255 - 47759105
Alignment:
| Q |
421 |
atatttttctatttttactttactaacatgccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctat |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | || |||||||||||||| || ||||||||||| | || |
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| T |
47759255 |
atatttttctatttttactttactaacatgccttgtatcatttttgaagaaatcgaagaagacgacaatgatgatattgacatggctgagtcattgcaat |
47759156 |
T |
|
| Q |
521 |
tcaacttcgagacattacgagttgctacagggaacttttctgaagctaata |
571 |
Q |
| |
|
||||||| |||||||||| |||||||||| | ||||||||||||||||||| |
|
|
| T |
47759155 |
tcaactttgagacattacaagttgctacaagtaacttttctgaagctaata |
47759105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 236 - 414
Target Start/End: Complemental strand, 47714004 - 47713816
Alignment:
| Q |
236 |
ggtatgaatgcagg--ataattttgacgacataaaatttacttcataataataagt--tgtgatggttaacagagttttgcattcaaatagagaaaacct |
331 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||| |||||| || |||| |||||||| | ||||||| |
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| T |
47714004 |
ggtatgaatgcaggctatagttttgacgacataaaat---cttcataataataagttgtgtgatgattaacaaagcgttgctttcaaatataaaaaacct |
47713908 |
T |
|
| Q |
332 |
agaagcag---------taattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagat |
414 |
Q |
| |
|
||| |||| |||||| |||| ||| ||| || ||||||||||| |||||| |||| |||||| |||||||| |||||||||||| |
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| T |
47713907 |
agatgcagtaatagtaataattcaaaaatagaaagaagggaaagaaaaatgcaagccattagtcataagtgttttgattataaaaattagat |
47713816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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