View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_180 (Length: 262)

Name: NF0856_low_180
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_180
NF0856_low_180
[»] chr4 (1 HSPs)
chr4 (38-237)||(1959783-1959982)
[»] chr2 (8 HSPs)
chr2 (86-237)||(39748761-39748915)
chr2 (86-237)||(26978568-26978722)
chr2 (86-237)||(27020261-27020415)
chr2 (99-237)||(27087975-27088115)
chr2 (38-87)||(39748684-39748733)
chr2 (48-87)||(26978750-26978789)
chr2 (48-87)||(27020443-27020482)
chr2 (52-87)||(27087898-27087933)
[»] chr6 (2 HSPs)
chr6 (86-237)||(34680963-34681117)
chr6 (48-87)||(34681145-34681184)
[»] chr8 (2 HSPs)
chr8 (100-237)||(11632116-11632255)
chr8 (52-87)||(11632298-11632333)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 1959783 - 1959982
Alignment:
Q  38 tgattaccttattctcaatctcaatggcttcatctcttaacttttctattgagcaatactacccatcctctaaattcctcttcatgtcctcttggccttc 137  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1959783 tgattaccttattctcaatttcaatggcttcatctcttaacttttctattgagcaatgctacccatcctctaaattcctcttcatgtcctcttggccttc 1959882  T
Q  138 ttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaacactcagaatgccttgatactacatcaatatgaccttccacattcttaacagt 237  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  1959883 ttttagttgtgattgtgatgttgcaatttgtgtagtttgctcataaacactcagaatgccttgatactacgtcagtatgaccttccgcattcttaacagt 1959982  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 39748761 - 39748915
Alignment:
Q  86 ttgagcaatactaccc-atcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 184  Q
    ||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  39748761 ttgagcaatgctaccccatcctctaaattccttttcatgttctcttggccttcttgcagttgtgattgcgatgttgcaatttttgtagtttgctcataaa 39748860  T
Q  185 ca--ctcagaatgccttgatactacatcaatatgaccttccacattcttaacagt 237  Q
    ||  ||| |||||| || |||| || ||||||||||  ||||||||||| |||||    
T  39748861 cactctcggaatgctttaataccacgtcaatatgactgtccacattctttacagt 39748915  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 26978722 - 26978568
Alignment:
Q  86 ttgagcaatactac-ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 184  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||| || ||| |||||||||| |||||||||||||||||| || ||||    
T  26978722 ttgagcaatgctacaccatcctctaacttcctcttcatgtcctcttgaccttcttctaattgcgattgtgatgctgcaatttttgtagtttgttcgtaaa 26978623  T
Q  185 cac--tcagaatgccttgatactacatcaatatgaccttccacattcttaacagt 237  Q
    |||  || ||||||||| |||| ||||||||||||  ||| ||||||||||||||    
T  26978622 cactttcggaatgccttaataccacatcaatatgagtttcaacattcttaacagt 26978568  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 27020415 - 27020261
Alignment:
Q  86 ttgagcaatactac-ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 184  Q
    ||||||||| |||| ||||||||||| ||| |||||||||| ||||| |||||||  |||||||| || |||| |||||||||||| ||||| || ||||    
T  27020415 ttgagcaatgctacaccatcctctaacttcatcttcatgtcttcttgaccttcttcaagttgtgactgcgatgctgcaatttttgtcgtttgttcgtaaa 27020316  T
Q  185 cac--tcagaatgccttgatactacatcaatatgaccttccacattcttaacagt 237  Q
    |||  ||||| |||||| |||| ||||||||||||  ||| ||||||||||||||    
T  27020315 cactttcagagtgccttaataccacatcaatatgagtttcaacattcttaacagt 27020261  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 27087975 - 27088115
Alignment:
Q  99 cccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaacac--tcagaatgc 196  Q
    |||||||||||| || ||||||||||||||||| ||||||| ||||||||| ||||||| || ||||||| | ||||| || |||||||  |  ||||||    
T  27087975 cccatcctctaattttctcttcatgtcctcttgaccttcttctagttgtgactgtgatgctgtaatttttttcgtttgttcgtaaacacttttggaatgc 27088074  T
Q  197 cttgatactacatcaatatgaccttccacattcttaacagt 237  Q
    ||| |||| ||||||||||||  ||| ||||||||||||||    
T  27088075 cttaataccacatcaatatgagtttcaacattcttaacagt 27088115  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 39748684 - 39748733
Alignment:
Q  38 tgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39748684 tgattaccttattctcaatctcaatggcttcatctcttaacttttctatt 39748733  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 26978789 - 26978750
Alignment:
Q  48 attctcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26978789 attctcaatctcaatggcttcatctcttaacttttctatt 26978750  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 27020482 - 27020443
Alignment:
Q  48 attctcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  27020482 attctcaatctcaatggcttcctctcttaacttttctatt 27020443  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 27087898 - 27087933
Alignment:
Q  52 tcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27087898 tcaatctcaatggtttcatctcttaacttttctatt 27087933  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 34681117 - 34680963
Alignment:
Q  86 ttgagcaatactac-ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaa 184  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||| || ||| |||||||||| |||||||||||||||||| |||||||    
T  34681117 ttgagcaatgctacaccatcctctaacttcctcttcatgtcctcttgaccttcttctaattgcgattgtgatgctgcaatttttgtagtttgttcataaa 34681018  T
Q  185 cac--tcagaatgccttgatactacatcaatatgaccttccacattcttaacagt 237  Q
    |||  |  ||||||||| |||| ||||||||||||  ||| ||||||||||||||    
T  34681017 cacttttggaatgccttaataccacatcaatatgagtttctacattcttaacagt 34680963  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 34681184 - 34681145
Alignment:
Q  48 attctcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34681184 attctcaatctcaatggcttcatctcttaacttttctatt 34681145  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 11632255 - 11632116
Alignment:
Q  100 ccatcctctaaattcctcttcatgtcctcttggccttcttttagttgtgattgtgatgttgcaatttttgtagtttgctcataaacac--tcagaatgcc 197  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||| |||||||  |||||||| |    
T  11632255 ccatcctctaatttcctcttcatgtcctcttgaccttcttctagttgtgattgcgatgctgcaatttttgtagtttgctcgtaaacactttcagaatgtc 11632156  T
Q  198 ttgatactacatcaatatgaccttccacattcttaacagt 237  Q
    ||  ||| ||||||||||||  ||| |||||||| |||||    
T  11632155 ttagtaccacatcaatatgagtttcaacattcttgacagt 11632116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 11632333 - 11632298
Alignment:
Q  52 tcaatctcaatggcttcatctcttaacttttctatt 87  Q
    ||||||||||||||||||||||||||||||||||||    
T  11632333 tcaatctcaatggcttcatctcttaacttttctatt 11632298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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