View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_181 (Length: 260)
Name: NF0856_low_181
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_181 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 10106951 - 10107181
Alignment:
| Q |
30 |
tatgtgactttatatagttgttgcaagagaagaggaaaattatataaaaccaatgtttttgtgattatttaattgttaatgggcaa-gttaggctgccct |
128 |
Q |
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| T |
10106951 |
tatgtgactttatatagttgttgcaagagaagaggaaaattatataaaaccaatgtttt-gtgattatttaattgttaatgggcaaagttaggctgccct |
10107049 |
T |
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| Q |
129 |
aactttttgttttcgaggatttcaatgatatgcccattagcttatgtatgggagaggaaacaagtttggtggtcnnnnnnnnncattttagaaatgatat |
228 |
Q |
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| T |
10107050 |
aactttttgttttcgaggatttcaatgatatgcccattagcttctgtatgggagaggagacaagtttggtggtctttttttttcattttagaaatgatat |
10107149 |
T |
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| Q |
229 |
attgtaatatacttttaaataaactctcaaat |
260 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
10107150 |
attgtaatatacttttaaataaactctcaaat |
10107181 |
T |
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