View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_193 (Length: 252)
Name: NF0856_low_193
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_193 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 7710614 - 7710427
Alignment:
| Q |
10 |
aagaatatgagagaaaggctattgtgagagttagagaggagaaaagtgtagaaaaagaagccatggtgagttcaatgctatggctaatggatgagtgatt |
109 |
Q |
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| T |
7710614 |
aagaaaatgagagaagggctattgtgagaattagagtggagaaaagtgtagaaaaagaagccatggtgagttcaatgctatggctaatggatgagtgatt |
7710515 |
T |
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| Q |
110 |
aatgtatgtgaagggcttcctttatatagaaatgaataaatgaagaaaatgtataatctgatacattatttaatcttttttaattgac |
197 |
Q |
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| T |
7710514 |
aatgtatgtgaagggcttcctttatatagaaatgaataaatgaagaaaatgtataatctgatacattatttaatcttttttaattgac |
7710427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 7732924 - 7732738
Alignment:
| Q |
10 |
aagaatatgagagaaaggctattgtgagagttagagaggagaaaagtgtagaaaaagaagccatggtgagttcaatgctatggctaatggatgagtgatt |
109 |
Q |
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||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |
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| T |
7732924 |
aagaaaatgagagaagggctattgtgagaattagagtggagaaaagtgtagaaaaagaagccatggtgagttcaatgctattggtaatggatgagtgttt |
7732825 |
T |
|
| Q |
110 |
aatgtatgtgaagggcttcctttatatagaaatgaataaatgaagaaaatgtataatctgatacattatttaatcttttttaattgac |
197 |
Q |
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| T |
7732824 |
aatgtctgtgaaggg-ttcctttttaaagaaatgaatatgtgtagaaaatgtataatctgatacattatttaatcttttttaattgac |
7732738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 7725514 - 7725329
Alignment:
| Q |
10 |
aagaatatgagagaaaggctattgtgagagttagagaggagaaaagtgtagaaaaagaagccatggtgagttcaatgctatggctaatggatgagtgatt |
109 |
Q |
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||||| ||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
7725514 |
aagaaaatgagagaagggctactgtgagaattagagaggagaaaagtgtagcaaaagaagccattgtgagttcaatgctattgctaatggatgagtgatt |
7725415 |
T |
|
| Q |
110 |
aatgtatgtgaagggcttcctttatatagaaatgaataaatgaagaaaatgtataatctgatacattatttaatcttttttaattgac |
197 |
Q |
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||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||||||||| |
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| T |
7725414 |
aatgtatgtgaaggg-ttcctttttatagaaatgaatatgtgaagaaaatgtataatcttatac-tcatttaatcttttttaattgac |
7725329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 7746987 - 7747154
Alignment:
| Q |
16 |
atgagagaaaggctattgtgagagttagagaggagaaaagtgtagaaaaagaagccatggtgagttcaatgctatggctaatggatgagtgattaatgta |
115 |
Q |
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||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
7746987 |
atgagagaaggactattgtgagagttagggaggagaaaagtgtaacaaaagaagccattgtgagttcaatgctattgctaatggatgagtgattaatgta |
7747086 |
T |
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| Q |
116 |
tgtgaagggcttcctttatatagaaatgaataaatgaagaaaatgtataatctgatacattatttaatc |
184 |
Q |
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||||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
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| T |
7747087 |
tgtgaaggg-ttcctttttatagaaataaatatgtgaagaaaatgtataatctcatacattatttaatc |
7747154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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