View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_21 (Length: 568)

Name: NF0856_low_21
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_21
NF0856_low_21
[»] chr1 (8 HSPs)
chr1 (1-414)||(51480221-51480632)
chr1 (69-414)||(30206714-30207053)
chr1 (201-414)||(51497281-51497488)
chr1 (200-366)||(51455723-51455889)
chr1 (430-540)||(30206544-30206654)
chr1 (454-540)||(51480710-51480796)
chr1 (433-540)||(51455991-51456098)
chr1 (430-505)||(51497542-51497617)
[»] chr6 (2 HSPs)
chr6 (1-185)||(18079865-18080049)
chr6 (209-328)||(18085532-18085651)
[»] chr5 (5 HSPs)
chr5 (230-363)||(43160686-43160819)
chr5 (199-379)||(27396430-27396609)
chr5 (440-540)||(43160930-43161030)
chr5 (232-377)||(20868606-20868751)
chr5 (430-498)||(27396695-27396763)
[»] scaffold0020 (1 HSPs)
scaffold0020 (233-375)||(137289-137431)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 51480221 - 51480632
Alignment:
Q  1 tcctcatttcttcacttttaatgtacttgcttttaagtttgtatctcttagtatcacatattttccaatttttaatttgcttttgggatgaacgttgcac 100  Q
    ||||||||||||||| ||||||||||||| ||||  |||||||| ||||||| ||| |||||||||||||| |||||||||||||||| |||| |||||     
T  51480221 tcctcatttcttcacatttaatgtacttgtttttccgtttgtatttcttagtttcatatattttccaatttataatttgcttttgggacgaacattgcag 51480320  T
Q  101 ggctctcacattctaagctaaaagtaaaagtcgcagattaccctaaaaataagcgcgtgtattggtaggggcttactgagtatatannnnnnnnn----c 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||             |    
T  51480321 ggctctcacattctaagctaaaagtaaaagtcgcagattaccctaaaaataagcgtgtgtactggtaggggcttactgagtatatatatatttttttctc 51480420  T
Q  197 cggttattctaattctatattgttaatgatttaacactttttgtagtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctc 296  Q
    | |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||    
T  51480421 cagttattctgattctatattgctaatgatttaacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgtacagaatgctc 51480520  T
Q  297 ttttaacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaattgagtttgagtttgagtttatcttccgagga 396  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||      |||||||||||||||||||||||||     
T  51480521 ttttaacatttgtcttctttgttgttgtgagcttcgttgtgggaagcttctaggtggtacagatccaa------ttgagtttgagtttatcttccgaggc 51480614  T
Q  397 cgtgattatctgcatggt 414  Q
    ||||||||||| ||||||    
T  51480615 cgtgattatcttcatggt 51480632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 69 - 414
Target Start/End: Complemental strand, 30207053 - 30206714
Alignment:
Q  69 tttttaatttgcttttgggatgaacgttgcacggctctcacattctaagctaaaagtaaaagtcgcagattaccctaaaaataagcgcgtgtattggtag 168  Q
    |||||||||||  |||||||||||| || || ||||||||  |||| |||||||| |||||| |||||||  |||||||||  |||| ||||| ||||||    
T  30207053 tttttaatttgtctttgggatgaacattacagggctctcatgttctgagctaaaaataaaagccgcagatatccctaaaaaagagcgtgtgtactggtag 30206954  T
Q  169 gggcttactgagtatatannnnnnnnnccggttattctaattctatattgttaatgatttaacactttttgtagtgacaactgtaaaacatcaatattcg 268  Q
    ||||||| |  ||||||           | ||||| |||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||| |    
T  30206953 gggcttatttcgtatatgcttgttttttcagttatactaattctatatagttaatgacttaacactttttgtagtgacaactgcaaaacgtcaatatttg 30206854  T
Q  269 actaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaattga 368  Q
    |||||||||| ||||||| | ||||||||||| |||||||||| |||||||  || ||||||||| |||||||||||||||||||||||||||||||  |    
T  30206853 actaccacagaagctgtacaaaatgctcttttgacatttgtctcctttgttgctgcgagcttcgtggtgggaagcttctaggtggtgcagatccaatcaa 30206754  T
Q  369 gtttgagtttgagtttatcttccgaggacgtgattatctgcatggt 414  Q
    ||||||      |||||||| |||||| | ||||||||||||||||    
T  30206753 gtttga------gtttatctaccgagggcttgattatctgcatggt 30206714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 201 - 414
Target Start/End: Original strand, 51497281 - 51497488
Alignment:
Q  201 tattctaattctatattgttaatgatttaacactttttgtagtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctctttt 300  Q
    ||||||||| | ||||  |||||||||| ||||||| |||||||||| ||| ||||| |||||||||||||||||||| ||||||| | |||| ||||||    
T  51497281 tattctaataccatatatttaatgattttacactttctgtagtgacatctgcaaaacctcaatattcgactaccacagaagctgtacaaaatgttctttt 51497380  T
Q  301 aacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaattgagtttgagtttgagtttatcttccgaggacgtg 400  Q
     |||||||||| |||||||  |||||||||||| ||||||||||||||||||||||||||||||      ||||||||||||||||||||||||| ||||    
T  51497381 gacatttgtctcctttgttgctgtgagcttcgtggtgggaagcttctaggtggtgcagatccaa------ttgagtttgagtttatcttccgagggcgtg 51497474  T
Q  401 attatctgcatggt 414  Q
    ||||||| ||||||    
T  51497475 attatcttcatggt 51497488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 200 - 366
Target Start/End: Original strand, 51455723 - 51455889
Alignment:
Q  200 ttattctaattctatattgttaatgatttaacactttttgtagtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttt 299  Q
    |||||||||| |||||| |||  ||| || |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||  | ||||||||||    
T  51455723 ttattctaatgctatatagttgttgacttcacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt 51455822  T
Q  300 taacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaatt 366  Q
    | || ||||||| || ||||  || ||||| ||| ||||||||||||||||||||||||||||||||    
T  51455823 tgacctttgtctcctctgttgctgcgagctccgtggtgggaagcttctaggtggtgcagatccaatt 51455889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 430 - 540
Target Start/End: Complemental strand, 30206654 - 30206544
Alignment:
Q  430 gattcgtgaatggtcacgatctgtgtggcttgcagatagtgatggaagcattccctgtccaaaagctgatgatgattgtggtcatgggttccttgaattg 529  Q
    |||||||||||||||| ||||||  ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||    
T  30206654 gattcgtgaatggtcaagatctggatggcttgcagacagtgatggtagcattccctgtccaaaagccgatgatgattgtgatcatggtttccttgaactg 30206555  T
Q  530 agaagcatact 540  Q
    |||||||||||    
T  30206554 agaagcatact 30206544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 540
Target Start/End: Original strand, 51480710 - 51480796
Alignment:
Q  454 gtggcttgcagatagtgatggaagcattccctgtccaaaagctgatgatgattgtggtcatgggttccttgaattgagaagcatact 540  Q
    ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||    
T  51480710 gtggcatgcagatagtgatggtagcattccctgtccaaaagccgatgatgattgtggtcatggtttcctcgaactgagaagcatact 51480796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 433 - 540
Target Start/End: Original strand, 51455991 - 51456098
Alignment:
Q  433 tcgtgaatggtcacgatctgtgtggcttgcagatagtgatggaagcattccctgtccaaaagctgatgatgattgtggtcatgggttccttgaattgaga 532  Q
    |||||| |||||| |||||| ||||| |||| ||   ||||| |||||||| ||||||||||||||| |||| |||| |||||| ||||||||| |||||    
T  51455991 tcgtgagtggtcaagatctgggtggcatgcaaatgtcgatggtagcattccttgtccaaaagctgataatgaatgtgatcatggtttccttgaactgaga 51456090  T
Q  533 agcatact 540  Q
    || |||||    
T  51456091 aggatact 51456098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 505
Target Start/End: Original strand, 51497542 - 51497617
Alignment:
Q  430 gattcgtgaatggtcacgatctgtgtggcttgcagatagtgatggaagcattccctgtccaaaagctgatgatgat 505  Q
    ||||| |||||||||| |||||| ||||| |||| ||  |||||| |||||||||||||||||||| |||| ||||    
T  51497542 gattcctgaatggtcaagatctgggtggcatgcaaatgatgatggtagcattccctgtccaaaagccgatggtgat 51497617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 18079865 - 18080049
Alignment:
Q  1 tcctcatttcttcacttttaatgtacttgcttttaagtttgtatctcttagtatcacatattttccaatttttaatttgcttttgggatgaacgttgcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18079865 tcctcatttcttcacttttaatgtacttgcttttaagtttgtatctcttagtatcacatattttccaatttttaatttgcttttgggatgaacgttgcac 18079964  T
Q  101 ggctctcacattctaagctaaaagtaaaagtcgcagattaccctaaaaataagcgcgtgtattggtaggggcttactgagtatat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18079965 ggctctcacattctaagctaaaagtaaaagtcgcagattaccctaaaaataagcgcgtgtattggtaggggcttactgagtatat 18080049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 209 - 328
Target Start/End: Original strand, 18085532 - 18085651
Alignment:
Q  209 ttctatattgttaatgatttaacactttttgtagtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttg 308  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18085532 ttctgtattgttaatgatttaacactttttgtagtgacaactgcaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttg 18085631  T
Q  309 tcttctttgttattgtgagc 328  Q
    ||||||||||| ||||||||    
T  18085632 tcttctttgttgttgtgagc 18085651  T

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Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 43160686 - 43160819
Alignment:
Q  230 acactttttgtagtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagct 329  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||| ||| ||||| | | ||||| |||||||| ||||||| || |||| |||||||||    
T  43160686 acactttttatagtgacaactgcaaaacatcaatatttgactaccgcagaagctgcacaaaatgcccttttaacctttgtctcctctgttgttgtgagct 43160785  T
Q  330 tcgttgtgggaagcttctaggtggtgcagatcca 363  Q
     ||| |||||||||||||||||||| ||||||||    
T  43160786 ccgtggtgggaagcttctaggtggtccagatcca 43160819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 199 - 379
Target Start/End: Original strand, 27396430 - 27396609
Alignment:
Q  199 gttattctaattctatattgttaatgatttaacactttttgtagtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctctt 298  Q
    ||||||| ||| |||| |||||||||| |||  |||||| |||| |||||||| |||||||||||||| || |||||||| ||||| | |||||| || |    
T  27396430 gttattccaatgctatgttgttaatgacttattactttt-gtagcgacaactgcaaaacatcaatatttgattaccacagaagctgcacagaatgttcct 27396528  T
Q  299 ttaacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaattgagtttgagtttg 379  Q
    || || ||||||| || ||||  |||||||||||||||||| ||||||||||||| ||||| ||| |||| ||||||||||    
T  27396529 ttgacctttgtctcctctgttgctgtgagcttcgttgtgggcagcttctaggtggggcagaaccatttgattttgagtttg 27396609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 540
Target Start/End: Original strand, 43160930 - 43161030
Alignment:
Q  440 tggtcacgatctgtgtggcttgcagatagtgatggaagcattccctgtccaaaagctgatgatgattgtggtcatgggttccttgaattgagaagcatac 539  Q
    |||||| |||||| |||||| |||||| | ||||| |||||||||||||||||||  ||| |||| |||  |||||| ||||||||| ||||||| ||||    
T  43160930 tggtcaagatctgggtggctagcagatggcgatggtagcattccctgtccaaaagtcgataatgaatgtcatcatggtttccttgaactgagaaggatac 43161029  T
Q  540 t 540  Q
    |    
T  43161030 t 43161030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 377
Target Start/End: Complemental strand, 20868751 - 20868606
Alignment:
Q  232 actttttgtagtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagcttc 331  Q
    ||||||||||||||||||||  | |  || ||||| ||||||||| | || |||  | ||||||||||| || |||||||||  ||||  | ||||||||    
T  20868751 actttttgtagtgacaactgccagagctcgatatttgactaccaccgaagttgtgcaaaatgctcttttgacctttgtcttcgctgttgctatgagcttc 20868652  T
Q  332 gttgtgggaagcttctaggtggtgcagatccaattgagtttgagtt 377  Q
    || ||||| ||||||  |||| | | | ||||||||||||||||||    
T  20868651 gtcgtggggagcttcatggtgatactggtccaattgagtttgagtt 20868606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 498
Target Start/End: Original strand, 27396695 - 27396763
Alignment:
Q  430 gattcgtgaatggtcacgatctgtgtggcttgcagatagtgatggaagcattccctgtccaaaagctga 498  Q
    |||||||  |||||||  ||||| ||||| ||||||||||||||| |  ||||||||||||||| ||||    
T  27396695 gattcgtacatggtcaaaatctgggtggcatgcagatagtgatggcaatattccctgtccaaaacctga 27396763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 375
Target Start/End: Complemental strand, 137431 - 137289
Alignment:
Q  233 ctttttgtagtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagcttcg 332  Q
    |||||||||||||||||||  |||  | |||||| ||||||||||| ||||||| | ||||||||||| || ||||||||| |||||    ||| |||||    
T  137431 ctttttgtagtgacaactgccaaagcttaatatttgactaccacagaagctgtacaaaatgctcttttgacctttgtcttcgttgttgcgctgaacttcg 137332  T
Q  333 ttgtgggaagcttctaggtggtgcagatccaattgagtttgag 375  Q
    | ||||  |||||||||||||||| |||||| |||||||||||    
T  137331 tcgtggtgagcttctaggtggtgctgatccagttgagtttgag 137289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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