View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_215 (Length: 248)
Name: NF0856_low_215
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_215 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41609084 - 41609319
Alignment:
| Q |
1 |
ttttcgacgaagattgatcatcatcactaacaactgtataaactttatacctataatataatacggtgatnnnnnnnnnnnnnnnntacaaaacctttat |
100 |
Q |
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| T |
41609084 |
ttttcgacgaaaattgatcaccatcactaacaacggtagaaactttatacctataatataatacggtgataaaaaaaaaa------tacaaaacctttat |
41609177 |
T |
|
| Q |
101 |
ttattcccgtttgctaagtatatgtatacagcagcctatttatgctccttttgttctggtaacttggttaatgtttgaattcaatcaccttctagttcta |
200 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41609178 |
ttattcctgtttgctaagtatatgtatatagcagcctatttatgctccttttgttctggtaacttggttaatgtttgaattcaatcaccttctagttcta |
41609277 |
T |
|
| Q |
201 |
tagttaccatttttgatggctgttagtgccttctagaattat |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
41609278 |
tagttaccatttttgatggctgttagtgccttctagaattat |
41609319 |
T |
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