View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_216 (Length: 248)

Name: NF0856_low_216
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_216
NF0856_low_216
[»] chr5 (6 HSPs)
chr5 (151-248)||(38816728-38816818)
chr5 (172-247)||(19820428-19820503)
chr5 (172-236)||(22013364-22013428)
chr5 (187-246)||(21137654-21137713)
chr5 (15-50)||(23539868-23539903)
chr5 (190-247)||(21191090-21191147)
[»] chr7 (5 HSPs)
chr7 (172-246)||(27944991-27945065)
chr7 (16-50)||(831549-831583)
chr7 (16-50)||(1196729-1196763)
chr7 (21-50)||(34958664-34958693)
chr7 (172-217)||(40132024-40132069)
[»] chr2 (4 HSPs)
chr2 (172-236)||(33519736-33519800)
chr2 (15-50)||(41300844-41300879)
chr2 (187-247)||(4332891-4332951)
chr2 (187-247)||(18276486-18276546)
[»] chr1 (6 HSPs)
chr1 (187-247)||(40917716-40917776)
chr1 (188-247)||(398799-398858)
chr1 (195-247)||(6427323-6427375)
chr1 (185-247)||(10572623-10572685)
chr1 (21-50)||(20805425-20805454)
chr1 (185-225)||(48040518-48040558)
[»] chr4 (6 HSPs)
chr4 (15-50)||(15747471-15747506)
chr4 (15-50)||(4830072-4830107)
chr4 (15-50)||(4833367-4833402)
chr4 (15-50)||(24046394-24046429)
chr4 (21-50)||(14912188-14912217)
chr4 (187-247)||(23293020-23293080)
[»] chr6 (9 HSPs)
chr6 (191-248)||(10294076-10294133)
chr6 (187-247)||(5000660-5000720)
chr6 (172-247)||(853893-853968)
chr6 (15-50)||(29415471-29415506)
chr6 (172-247)||(30866178-30866253)
chr6 (172-225)||(8365575-8365628)
chr6 (187-247)||(7938081-7938141)
chr6 (187-247)||(9107404-9107464)
chr6 (187-247)||(16766662-16766722)
[»] scaffold0306 (1 HSPs)
scaffold0306 (171-247)||(13349-13425)
[»] scaffold0152 (1 HSPs)
scaffold0152 (171-247)||(21902-21978)
[»] scaffold0053 (1 HSPs)
scaffold0053 (187-247)||(8763-8823)
[»] chr8 (4 HSPs)
chr8 (172-236)||(25192392-25192456)
chr8 (181-247)||(926822-926888)
chr8 (189-247)||(29510338-29510396)
chr8 (190-247)||(22651944-22652001)
[»] chr3 (10 HSPs)
chr3 (172-236)||(8842280-8842344)
chr3 (187-247)||(28917966-28918026)
chr3 (15-50)||(18893784-18893819)
chr3 (15-50)||(18898077-18898112)
chr3 (187-246)||(24205076-24205135)
chr3 (16-50)||(10833224-10833258)
chr3 (173-247)||(32429414-32429488)
chr3 (21-50)||(10952651-10952680)
chr3 (21-50)||(10953580-10953609)
chr3 (181-225)||(10335342-10335386)
[»] scaffold0475 (1 HSPs)
scaffold0475 (187-246)||(3281-3340)
[»] scaffold0223 (1 HSPs)
scaffold0223 (172-247)||(20122-20197)
[»] scaffold0021 (1 HSPs)
scaffold0021 (15-50)||(147724-147759)
[»] scaffold0007 (1 HSPs)
scaffold0007 (187-246)||(225303-225362)
[»] scaffold0003 (1 HSPs)
scaffold0003 (187-236)||(241559-241608)


Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 38816818 - 38816728
Alignment:
Q  151 taattgaacggtaaccatatactatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatcg 248  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||       |||||||||||||| ||||||| |||||||||| |||||||||||    
T  38816818 taattgaacggtaaccatatactatgaagcactaatacggactccg-------cacggatactgacacgccgacaccgctaataatttgagaaaatcg 38816728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 19820503 - 19820428
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||| ||| |||||||||||||||||| |||||| |||||||  |||||| |||||||||| ||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatc 19820428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 22013364 - 22013428
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 236  Q
    |||||||| ||| |||||||||||||||||| |||||| ||||||| |||||||  |||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataat 22013428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 21137654 - 21137713
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 246  Q
    |||||||||||||||  |||||| ||||||| ||||||| || ||||||| |||||||||    
T  21137654 acggacaccggacacaacacggacactgacacgccgacatcggtaataatctgagaaaat 21137713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 23539903 - 23539868
Alignment:
Q  15 cagagattttgggagaaaacaagagaaagctaggag 50  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23539903 cagaggttttgggagaaaacaagagaaagctaggag 23539868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 21191147 - 21191090
Alignment:
Q  190 gacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    ||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  21191147 gacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatc 21191090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 27944991 - 27945065
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 246  Q
    |||||||| ||| |||||||||||||||||| |||||| ||||||| ||||||| | |||||||| |||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 831549 - 831583
Alignment:
Q  16 agagattttgggagaaaacaagagaaagctaggag 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  831549 agaggttttgggagaaaacaagagaaagctaggag 831583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 1196729 - 1196763
Alignment:
Q  16 agagattttgggagaaaacaagagaaagctaggag 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  1196729 agaggttttgggagaaaacaagagaaagctaggag 1196763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 34958693 - 34958664
Alignment:
Q  21 ttttgggagaaaacaagagaaagctaggag 50  Q
    ||||||||||||||||||||||||||||||    
T  34958693 ttttgggagaaaacaagagaaagctaggag 34958664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 40132069 - 40132024
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgaca 217  Q
    |||||||| ||| ||| ||||||||||||||||||||| |||||||    
T  40132069 ctatgaagtacggatatggacaccggacacggcacggacactgaca 40132024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 236  Q
    |||||||| ||| |||||||||||||||||| | ||||||||||||  |||||| ||||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 41300844 - 41300879
Alignment:
Q  15 cagagattttgggagaaaacaagagaaagctaggag 50  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41300844 cagaggttttgggagaaaacaagagaaagctaggag 41300879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 4332891 - 4332951
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||||||||| |||||| ||| |||||||  | ||||||| || |||||||    
T  4332891 acggacaccggacacggcacagatacttacatgccgacactgataataatttgggaaaatc 4332951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 18276486 - 18276546
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    ||||||||||||||||  || || ||||| | ||||||| |||||||||| ||||||||||    
T  18276486 acggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatc 18276546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 40917716 - 40917776
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||||| |||||||||||||| |||||||  ||||||||| ||| ||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatc 40917776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 398858 - 398799
Alignment:
Q  188 cggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||||||||| ||| ||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatc 398799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 6427323 - 6427375
Alignment:
Q  195 cggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    ||||||||||||||| ||||||| ||| ||| |||||||||| ||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatc 6427375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 10572685 - 10572623
Alignment:
Q  185 atacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||||||| || | | ||||||| ||||||| | |||||||| ||||||||||    
T  10572685 atacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatc 10572623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 20805454 - 20805425
Alignment:
Q  21 ttttgggagaaaacaagagaaagctaggag 50  Q
    ||||||||||||||||||||||||||||||    
T  20805454 ttttgggagaaaacaagagaaagctaggag 20805425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 48040558 - 48040518
Alignment:
Q  185 atacggacaccggacacggcacggatactgacaagccgaca 225  Q
    |||||||||||||||||| |||||| ||||||| |||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgaca 48040518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 15747471 - 15747506
Alignment:
Q  15 cagagattttgggagaaaacaagagaaagctaggag 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  15747471 cagagattttgggagaaaacaagagaaagctaggag 15747506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 4830072 - 4830107
Alignment:
Q  15 cagagattttgggagaaaacaagagaaagctaggag 50  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4830072 cagaggttttgggagaaaacaagagaaagctaggag 4830107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 4833367 - 4833402
Alignment:
Q  15 cagagattttgggagaaaacaagagaaagctaggag 50  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4833367 cagaggttttgggagaaaacaagagaaagctaggag 4833402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 24046394 - 24046429
Alignment:
Q  15 cagagattttgggagaaaacaagagaaagctaggag 50  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24046394 cagaggttttgggagaaaacaagagaaagctaggag 24046429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 14912217 - 14912188
Alignment:
Q  21 ttttgggagaaaacaagagaaagctaggag 50  Q
    ||||||||||||||||||||||||||||||    
T  14912217 ttttgggagaaaacaagagaaagctaggag 14912188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 23293080 - 23293020
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||||| |||||| | ||||| |||||||  ||||||||| ||| ||||||    
T  23293080 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 23293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 10294076 - 10294133
Alignment:
Q  191 acaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatcg 248  Q
    |||||||||||| |||||||||||||| ||||| | |||||||||| ||||| |||||    
T  10294076 acaccggacacgacacggatactgacatgccgataccgctaataatttgagataatcg 10294133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 5000720 - 5000660
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||| | |||||||||||||| | ||||| ||||||||||  |||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatc 5000660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 853968 - 853893
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||  ||| |||||||||||||||||| ||||||| |||||| |||||||   |||||||| ||| ||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatc 853893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 29415471 - 29415506
Alignment:
Q  15 cagagattttgggagaaaacaagagaaagctaggag 50  Q
    ||||| ||||||||||||||||||||||||||||||    
T  29415471 cagaggttttgggagaaaacaagagaaagctaggag 29415506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 30866253 - 30866178
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||| |||||||||||||||||||| | ||| || || ||||  || ||| |||||||||| ||||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatc 30866178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 8365628 - 8365575
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgaca 225  Q
    |||||||| ||| ||||||||||| |||||| |||||| ||||||| |||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgaca 8365575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 7938081 - 7938141
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||||| || ||| ||||||| |||||||  ||||||||| ||| ||||||    
T  7938081 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 7938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 9107464 - 9107404
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||||| |||||| ||| ||| |||||||  ||||||||| ||| ||||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatc 9107404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 16766662 - 16766722
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||||| || ||| ||||||| |||||||  ||||||||| ||| ||||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 16766722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 13349 - 13425
Alignment:
Q  171 actatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    ||||||||| ||| |||||||||||||| | | |||||| ||||||| |||||||   |||||||| ||||||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 13425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 21978 - 21902
Alignment:
Q  171 actatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    ||||||||| ||| |||||||||||||| | | |||||| ||||||| |||||||   |||||||| ||||||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 21902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 8763 - 8823
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 8823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 25192456 - 25192392
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 236  Q
    |||||||| ||||||||||||| ||||||||  ||||| ||||||| |||||||  |||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataat 25192392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 926888 - 926822
Alignment:
Q  181 acgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    ||||| |||||||||||||||| |||||| ||||||| ||| |||   |||||||| ||||||||||    
T  926888 acgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatc 926822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 29510396 - 29510338
Alignment:
Q  189 ggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 29510338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 22651944 - 22652001
Alignment:
Q  190 gacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    ||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  22651944 gacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 22652001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 8842280 - 8842344
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 236  Q
    |||||||| ||| |||||||||||||| ||| |||||| | ||||| ||||||| ||||||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataat 8842344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 28917966 - 28918026
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatc 28918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 18893819 - 18893784
Alignment:
Q  15 cagagattttgggagaaaacaagagaaagctaggag 50  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18893819 cagaggttttgggagaaaacaagagaaagctaggag 18893784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 18898112 - 18898077
Alignment:
Q  15 cagagattttgggagaaaacaagagaaagctaggag 50  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18898112 cagaggttttgggagaaaacaagagaaagctaggag 18898077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 24205135 - 24205076
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 246  Q
    |||||||||||||||| |||||| ||||||| |||||||  | ||||||| |||||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaat 24205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 10833224 - 10833258
Alignment:
Q  16 agagattttgggagaaaacaagagaaagctaggag 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  10833224 agaggttttgggagaaaacaagagaaagctaggag 10833258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 32429488 - 32429414
Alignment:
Q  173 tatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    ||||||| ||| |||||||||||||||||  |||| | | |||||  ||||||||||||||||| | ||||||||    
T  32429488 tatgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaaaatc 32429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 10952651 - 10952680
Alignment:
Q  21 ttttgggagaaaacaagagaaagctaggag 50  Q
    ||||||||||||||||||||||||||||||    
T  10952651 ttttgggagaaaacaagagaaagctaggag 10952680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 10953580 - 10953609
Alignment:
Q  21 ttttgggagaaaacaagagaaagctaggag 50  Q
    ||||||||||||||||||||||||||||||    
T  10953580 ttttgggagaaaacaagagaaagctaggag 10953609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 10335386 - 10335342
Alignment:
Q  181 acgaatacggacaccggacacggcacggatactgacaagccgaca 225  Q
    ||||| |||||||||||||||| |||||| ||||||| |||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgaca 10335342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 3281 - 3340
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 246  Q
    |||||||||||||||| |||||||||||||| | |||||| ||||| ||| | |||||||    
T  3281 acggacaccggacacgacacggatactgacacgtcgacaatgctaacaattttagaaaat 3340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 20122 - 20197
Alignment:
Q  172 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 247  Q
    |||||||| ||  |||||||||||||||||| |||||| | ||||| |||||||  ||||||||| ||| ||||||    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 20197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 147759 - 147724
Alignment:
Q  15 cagagattttgggagaaaacaagagaaagctaggag 50  Q
    ||||| ||||||||||||||||||||||||||||||    
T  147759 cagaggttttgggagaaaacaagagaaagctaggag 147724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 225362 - 225303
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 246  Q
    |||||||||||||||| |||||| ||||||| |||||||  | ||||||| |||||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaat 225303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 241559 - 241608
Alignment:
Q  187 acggacaccggacacggcacggatactgacaagccgacaacgctaataat 236  Q
    |||||||||||||||| |||||| ||||||| |||||||  |||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataat 241608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3291 times since January 2019
Visitors: 6172