View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_22 (Length: 560)
Name: NF0856_low_22
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 79 - 554
Target Start/End: Complemental strand, 7081203 - 7080728
Alignment:
| Q |
79 |
aacattgttcatatgttgaggaaggttgttcagattttccgaccagggacaatgtcggtgtcaataacgacatgtagtgagtataacaatgaggtttgga |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7081203 |
aacattgttcatatgttgaggaaggttgttcagattttccgaccagggacaatgtcggtgtcgataacgacatgtagtgagtataacaatgaggtttgga |
7081104 |
T |
|
| Q |
179 |
gaaaggttactggtgcattggagcctcttgggttgaaatgtaggagttgtgctatggatcagtttcctgcaataggtagtgttgtgtttcaaacgtttag |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7081103 |
gaaaggttactggtgcattggagcctcttgggttgaaatgtaggagttgtgctatggatcagtttcctgcaataggtagtgttgtgtttcaaacgtttac |
7081004 |
T |
|
| Q |
279 |
cccaagtcgtcggaaaaatgcttcaaagtagtcaatgcatgaaaatctcgatcatctgattttgatcgagatttacaacgtatctttttatttatcgagc |
378 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
7081003 |
cccacgtcgtcggaaaaatgcttcaaagtagtcaatgcatgaaaatctcgatcatctgattttgatcaagatttacaacgtatctttttatttatcaagc |
7080904 |
T |
|
| Q |
379 |
tttaaatttggaccgtcttgatttgtataactgcaagattctccgatgttagggaatcaaggtcaaaaatttgagagcataagctaacaagagtgacttg |
478 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7080903 |
tttaaatttggaccgtcttgatttgtataagtgcaagattctccgatgttagggaatcaatgtcaaaaatttgagagcataagctaacaagagtgactta |
7080804 |
T |
|
| Q |
479 |
gaatttagttgaaatgtttcaggggtggtgacatagcacaatgtggttggttcctatgtatgatgaatattgttgg |
554 |
Q |
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| T |
7080803 |
gaatttagttgaaatatttcaggggtggtgacatagcacaatgtggttggttcctatgtatgatgaatattgttgg |
7080728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 33991167 - 33991087
Alignment:
| Q |
7 |
acttggcctagatcagcagtgaagcaaacaacatcacagccatagttctctctgaaatataaataaacatcaaacattgtt |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33991167 |
acttggcctagatcagcagtgaagcaaacaacatcacagccatagttctctctgaaatataaataaacatcaaatattgtt |
33991087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 18854950 - 18855006
Alignment:
| Q |
7 |
acttggcctagatcagcagtgaagcaaacaacatcacagccatagttctctctgaaa |
63 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18854950 |
acttggccaacatcagcagtgaagcaaacaacatcacagccataattctctctgaaa |
18855006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 42868178 - 42868231
Alignment:
| Q |
7 |
acttggcctagatcagcagtgaagcaaacaacatcacagccatagttctctctg |
60 |
Q |
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|||||||| | ||||||||||||||| ||||||||||| || || ||||||||| |
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| T |
42868178 |
acttggccaacatcagcagtgaagcacacaacatcacaaccgtaattctctctg |
42868231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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