View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_221 (Length: 241)
Name: NF0856_low_221
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_221 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 35204173 - 35204328
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacagggtttatca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35204173 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
35204272 |
T |
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| Q |
129 |
acaaaaactcatatattttcttggttcccacttccaatattcatactcctattaca |
184 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35204273 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattaca |
35204328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 55859453 - 55859306
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacagggtttatca |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||| |
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| T |
55859453 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccatagtgctagg----tgacaggtttcatca |
55859358 |
T |
|
| Q |
129 |
acaaaaactcatatattttcttggttcccacttccaatattcatactcctattaca |
184 |
Q |
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|| | | |||||||||||||||||| | ||| ||||||||||||||| ||||| |
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| T |
55859357 |
ac----attgatatattttcttggttccaatttcaaatattcatactcctcttaca |
55859306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 46267428 - 46267346
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
46267428 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaatgcaggtgcctagaaaccatagtgctaggtg |
46267346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 29275145 - 29275227
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
111 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
29275145 |
aacttatatgttgtcatttagtggcaaggaacatttcatcatctatattcaattcaggtgactagaaaccatagtgctaggtg |
29275227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 3822574 - 3822721
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacagggtttatca |
128 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||| ||||||| || |||| |
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| T |
3822574 |
aacttatatgctgtcatttagtggcagggaacatattatcatctatattcaattcaggtgcctagaaactatagtgctagg----tgacaggtttcatca |
3822669 |
T |
|
| Q |
129 |
acaaaaactcatatattttcttggttcccacttccaatattcatactcctattaca |
184 |
Q |
| |
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|| | | |||||||||||||||||| | ||| ||||||||||||||| ||||| |
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|
| T |
3822670 |
ac----attgatatattttcttggttccaatttctaatattcatactcctcttaca |
3822721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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